Wall clock time and date at job start Fri Apr 10 2020 13:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.67574 * 34.48076 * 12 11 10 14 14 C 1.53332 * 109.67972 * 155.00177 * 12 11 10 15 15 C 1.52731 * 108.38057 * 189.62511 * 14 12 11 16 16 C 1.50627 * 110.60004 * 308.98109 * 15 14 12 17 17 C 1.39031 * 117.75703 * 197.49171 * 16 15 14 18 18 Cl 1.73606 * 119.73699 * 0.19566 * 17 16 15 19 19 C 1.38045 * 120.52063 * 180.23603 * 17 16 15 20 20 C 1.38243 * 119.75878 * 0.02562 * 19 17 16 21 21 C 1.37937 * 119.78467 * 359.90012 * 20 19 17 22 22 C 1.37648 * 122.57584 * 17.55658 * 16 15 14 23 23 C 1.50635 * 122.56546 * 359.51743 * 22 16 15 24 24 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.00902 * 111.00582 * 303.95797 * 11 10 9 30 30 H 1.09001 * 109.68551 * 309.34548 * 14 12 11 31 31 H 1.08996 * 109.68484 * 69.86781 * 14 12 11 32 32 H 1.09004 * 109.25595 * 69.26923 * 15 14 12 33 33 H 1.08995 * 109.25261 * 188.73251 * 15 14 12 34 34 H 1.08006 * 120.11983 * 180.02562 * 19 17 16 35 35 H 1.08001 * 120.10734 * 179.87527 * 20 19 17 36 36 H 1.08002 * 119.71305 * 180.02562 * 21 20 19 37 37 H 1.08993 * 109.26632 * 257.38839 * 23 22 16 38 38 H 1.08999 * 109.24605 * 137.95007 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 7 5.4906 -2.6364 0.0022 12 6 6.0171 -4.0079 0.0040 13 1 5.3588 -4.6544 -0.5762 14 6 7.4238 -4.0218 -0.6062 15 6 7.8450 -5.4753 -0.8123 16 6 7.6510 -6.2679 0.4538 17 6 8.3143 -7.4848 0.5640 18 17 9.3270 -8.0342 -0.7347 19 6 8.1733 -8.2600 1.6974 20 6 7.3659 -7.8235 2.7312 21 6 6.7085 -6.6156 2.6240 22 6 6.8507 -5.8324 1.4855 23 6 6.1099 -4.5215 1.4393 24 1 -0.4849 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 3.6587 -3.1509 -0.8875 28 1 3.6580 -3.1497 0.8925 29 1 5.8523 -2.1109 -0.7795 30 1 7.4133 -3.5032 -1.5649 31 1 8.1222 -3.5290 0.0701 32 1 7.2426 -5.9149 -1.6073 33 1 8.8963 -5.5077 -1.0983 34 1 8.6919 -9.2042 1.7763 35 1 7.2500 -8.4264 3.6197 36 1 6.0783 -6.2755 3.4325 37 1 6.6373 -3.7887 2.0500 38 1 5.1047 -4.6627 1.8363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171024125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:50 Heat of formation + Delta-G solvation = -22.138953 kcal Electronic energy + Delta-G solvation = -18836.672568 eV Core-core repulsion = 15895.658801 eV Total energy + Delta-G solvation = -2941.013767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.15935 -38.48838 -37.39803 -35.99128 -34.57980 -33.16643 -32.00307 -30.26154 -29.00691 -26.07947 -24.41392 -23.15271 -23.01891 -22.16657 -20.32467 -18.94830 -17.78750 -16.98498 -16.73560 -16.31104 -16.13121 -15.72542 -15.37560 -15.04527 -14.71617 -14.60166 -14.29466 -14.08906 -13.84679 -13.44239 -13.18654 -13.12308 -12.85752 -12.66071 -12.23589 -12.18625 -12.12909 -11.91745 -11.79729 -11.68792 -11.42647 -11.32166 -11.26287 -10.76442 -9.60631 -9.57468 -9.34222 -8.29527 -6.34319 0.17670 0.30258 1.16194 1.37662 1.40327 1.53411 2.37617 2.62727 3.06226 3.14859 3.59073 3.73392 3.92818 4.05304 4.08064 4.17026 4.35753 4.43447 4.47572 4.50948 4.56044 4.62288 4.73109 4.81317 4.92811 4.93050 4.98611 5.01639 5.15879 5.26607 5.31236 5.35674 5.44541 5.50394 5.60545 5.64659 5.87412 6.15828 6.26155 6.55825 6.74868 7.30749 8.87268 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033971 B = 0.003215 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.037454 B = 8707.308755 C = 9143.690188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.004 4.004 10 C 0.088 3.912 11 N -0.686 5.686 12 C 0.087 3.913 13 H 0.035 0.965 14 C -0.111 4.111 15 C -0.077 4.077 16 C -0.082 4.082 17 C -0.049 4.049 18 Cl -0.071 7.071 19 C -0.119 4.119 20 C -0.108 4.108 21 C -0.123 4.123 22 C -0.070 4.070 23 C -0.066 4.066 24 H 0.267 0.733 25 H 0.024 0.976 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.054 0.946 29 H 0.346 0.654 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.139 0.861 37 H 0.086 0.914 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.043 -15.794 2.200 27.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.042 4.042 10 C -0.041 4.041 11 N -0.318 5.318 12 C -0.023 4.023 13 H 0.053 0.947 14 C -0.149 4.149 15 C -0.114 4.114 16 C -0.082 4.082 17 C -0.075 4.075 18 Cl -0.042 7.042 19 C -0.137 4.137 20 C -0.126 4.126 21 C -0.141 4.141 22 C -0.071 4.071 23 C -0.104 4.104 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.165 0.835 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.168 0.832 35 H 0.176 0.824 36 H 0.157 0.843 37 H 0.105 0.895 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 22.037 -15.667 2.757 27.179 hybrid contribution -0.632 0.313 -1.026 1.245 sum 21.406 -15.354 1.731 26.400 Atomic orbital electron populations 1.70071 1.08374 1.28245 1.52585 1.26029 0.95628 1.03653 0.93962 0.85581 0.79482 0.77886 0.79214 1.19081 1.21071 1.16915 1.21425 0.92080 0.93133 1.50672 0.95181 1.19432 0.93392 0.94456 0.96876 1.21653 0.86470 0.97266 0.98696 1.60481 1.07308 1.13725 1.50296 1.21491 0.95847 0.89066 0.95895 0.94717 1.21689 0.95177 0.96297 1.01726 1.20503 1.02990 0.94030 0.93917 1.19618 0.97239 0.94241 0.97134 1.21106 0.98576 0.96168 0.91658 1.98350 1.67339 1.89160 1.49320 1.21255 0.99893 1.00467 0.92116 1.21338 0.95859 0.96127 0.99289 1.21543 1.00003 0.94919 0.97667 1.19698 0.96916 0.96641 0.93852 1.20408 0.99507 0.93075 0.97380 0.92448 0.95754 0.96233 0.96817 0.92717 0.83479 0.90024 0.90531 0.90273 0.89098 0.83227 0.82432 0.84340 0.89545 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 2 C 0.00 0.24 5.47 84.65 0.46 0.70 16 3 Si 0.96 44.55 27.47 68.60 1.88 46.43 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 7 C -0.53 -31.20 9.66 25.60 0.25 -30.95 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 9 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 10 C 0.09 3.49 5.43 86.30 0.47 3.96 16 11 N -0.69 -21.31 6.32 -491.45 -3.10 -24.42 16 12 C 0.09 2.26 2.51 44.94 0.11 2.37 16 13 H 0.03 0.99 7.76 -2.39 -0.02 0.98 16 14 C -0.11 -2.28 5.36 30.62 0.16 -2.11 16 15 C -0.08 -1.50 5.00 29.74 0.15 -1.35 16 16 C -0.08 -1.76 5.74 -19.84 -0.11 -1.87 16 17 C -0.05 -0.96 6.31 22.41 0.14 -0.82 16 18 Cl -0.07 -1.27 27.27 -2.72 -0.07 -1.35 16 19 C -0.12 -1.99 9.82 22.23 0.22 -1.77 16 20 C -0.11 -1.70 10.05 22.20 0.22 -1.48 16 21 C -0.12 -2.36 9.61 22.36 0.21 -2.14 16 22 C -0.07 -1.57 5.74 -19.86 -0.11 -1.69 16 23 C -0.07 -1.65 5.15 29.74 0.15 -1.50 16 24 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 26 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 27 H 0.01 0.56 8.06 -2.39 -0.02 0.54 16 28 H 0.05 2.25 7.71 -2.39 -0.02 2.23 16 29 H 0.35 9.80 8.24 -89.69 -0.74 9.06 16 30 H 0.08 1.50 7.94 -2.39 -0.02 1.48 16 31 H 0.08 1.55 8.10 -2.39 -0.02 1.54 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.59 7.24 -2.39 -0.02 1.57 16 34 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.14 2.28 8.05 -2.91 -0.02 2.26 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.07 1.79 7.75 -2.39 -0.02 1.77 16 Total: -1.00 -65.96 320.22 1.72 -64.24 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.26 Total: 13.75 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 2.46 Total: -38.70 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.80 Total: -84.37 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.07 Total: -1.35 kcal Total: -65.96 1.72 -64.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171024125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.101 kcal (2) G-P(sol) polarization free energy of solvation -65.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds