Wall clock time and date at job start Fri Apr 10 2020 13:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48493 * 109.46942 * 269.99803 * 3 2 1 5 5 H 1.48498 * 109.46726 * 29.99964 * 3 2 1 6 6 H 1.48502 * 109.47210 * 149.99371 * 3 2 1 7 7 C 1.37875 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99991 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00560 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47363 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47380 * 179.97438 * 10 9 7 12 12 C 1.46893 * 111.00548 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.67678 * 34.48440 * 12 11 10 14 14 C 1.53317 * 109.68375 * 155.00226 * 12 11 10 15 15 C 1.52731 * 108.40090 * 189.54634 * 14 12 11 16 16 C 1.50632 * 110.58857 * 308.86638 * 15 14 12 17 17 C 1.38894 * 117.74097 * 197.65421 * 16 15 14 18 18 C 1.38052 * 120.53564 * 180.62906 * 17 16 15 19 19 Cl 1.73602 * 120.12952 * 179.97438 * 18 17 16 20 20 C 1.38374 * 119.74215 * 359.97003 * 18 17 16 21 21 C 1.37909 * 119.76005 * 359.86936 * 20 18 17 22 22 C 1.37672 * 122.56245 * 17.99942 * 16 15 14 23 23 C 1.50626 * 122.54841 * 358.92363 * 22 16 15 24 24 H 0.96998 * 120.00189 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.46826 * 59.99593 * 9 7 2 26 26 H 1.09001 * 109.46840 * 300.00273 * 9 7 2 27 27 H 1.09003 * 109.47299 * 59.99923 * 10 9 7 28 28 H 1.09001 * 109.47157 * 299.99824 * 10 9 7 29 29 H 1.00905 * 110.99493 * 56.04240 * 11 10 9 30 30 H 1.09000 * 109.68120 * 69.81207 * 14 12 11 31 31 H 1.09001 * 109.67421 * 309.27228 * 14 12 11 32 32 H 1.09001 * 109.25202 * 188.58130 * 15 14 12 33 33 H 1.08997 * 109.22367 * 69.13228 * 15 14 12 34 34 H 1.08004 * 119.73193 * 0.60155 * 17 16 15 35 35 H 1.08003 * 120.12142 * 179.90027 * 20 18 17 36 36 H 1.08001 * 119.71983 * 180.02562 * 21 20 18 37 37 H 1.08998 * 109.25863 * 138.31992 * 23 22 16 38 38 H 1.09003 * 109.25487 * 257.74633 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4905 -2.6366 0.0009 12 6 6.0170 -4.0079 0.0002 13 1 5.3588 -4.6535 -0.5812 14 6 7.4235 -4.0207 -0.6099 15 6 7.8460 -5.4738 -0.8169 16 6 7.6552 -6.2665 0.4497 17 6 8.3222 -7.4798 0.5597 18 6 8.1783 -8.2594 1.6899 19 17 9.0164 -9.7745 1.8160 20 6 7.3636 -7.8283 2.7220 21 6 6.7036 -6.6221 2.6150 22 6 6.8491 -5.8356 1.4792 23 6 6.1092 -4.5243 1.4347 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8910 26 1 3.8752 -0.6804 -0.8888 27 1 3.6586 -3.1502 -0.8893 28 1 3.6579 -3.1505 0.8907 29 1 5.8521 -2.1104 0.7824 30 1 8.1218 -3.5283 0.0669 31 1 7.4126 -3.5016 -1.5682 32 1 8.8966 -5.5050 -1.1056 33 1 7.2420 -5.9136 -1.6105 34 1 8.9581 -7.8164 -0.2458 35 1 7.2454 -8.4341 3.6083 36 1 6.0682 -6.2862 3.4211 37 1 5.1038 -4.6652 1.8313 38 1 6.6370 -3.7928 2.0467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171105786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:53 Heat of formation + Delta-G solvation = -7.059083 kcal Electronic energy + Delta-G solvation = -18678.004996 eV Core-core repulsion = 15737.645142 eV Total energy + Delta-G solvation = -2940.359855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35726 -37.58848 -36.51948 -34.48822 -32.96752 -32.21847 -30.42775 -29.43041 -27.59061 -24.35551 -23.43935 -22.53103 -21.93559 -20.59018 -19.43318 -16.94264 -16.80824 -16.13618 -15.68941 -14.88150 -14.62379 -14.41369 -14.19142 -14.02490 -13.70022 -13.40776 -13.06978 -12.90855 -12.57813 -12.30570 -12.27362 -12.01151 -11.42380 -11.32173 -11.14805 -11.09063 -11.04096 -10.82781 -10.62281 -10.19200 -9.81044 -9.68485 -9.24161 -9.06190 -8.66424 -8.54855 -7.97629 -6.05474 -4.04051 0.92518 1.03092 1.88173 3.32041 3.34843 3.38940 3.43198 4.33835 4.42110 4.45136 4.61198 4.72126 4.84223 4.93178 5.00238 5.03562 5.29089 5.34430 5.38055 5.45042 5.57414 5.62512 5.75164 5.79308 5.84337 5.97057 6.01960 6.14472 6.19030 6.25500 6.31709 6.40426 6.61465 6.75221 7.11616 7.36656 7.57414 7.72888 7.88032 8.51791 8.98533 9.56850 11.07864 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040818 B = 0.002903 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.815261 B = 9644.365968 C =10002.727839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.687 5.687 12 C 0.088 3.912 13 H 0.080 0.920 14 C -0.108 4.108 15 C -0.081 4.081 16 C -0.062 4.062 17 C -0.112 4.112 18 C -0.039 4.039 19 Cl -0.078 7.078 20 C -0.115 4.115 21 C -0.108 4.108 22 C -0.060 4.060 23 C -0.114 4.114 24 H 0.263 0.737 25 H 0.013 0.987 26 H 0.021 0.979 27 H 0.064 0.936 28 H 0.022 0.978 29 H 0.336 0.664 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.472 -15.649 3.267 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.055 4.055 11 N -0.316 5.316 12 C -0.023 4.023 13 H 0.098 0.902 14 C -0.146 4.146 15 C -0.118 4.118 16 C -0.062 4.062 17 C -0.131 4.131 18 C -0.065 4.065 19 Cl -0.049 7.049 20 C -0.133 4.133 21 C -0.126 4.126 22 C -0.061 4.061 23 C -0.152 4.152 24 H 0.073 0.927 25 H 0.031 0.969 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.154 0.846 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.097 0.903 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.416 -15.578 2.584 25.026 hybrid contribution 0.161 0.329 1.087 1.148 sum 19.577 -15.248 3.671 25.085 Atomic orbital electron populations 1.69913 1.06337 1.26937 1.51099 1.25014 0.94732 0.99237 0.94476 0.86727 0.80253 0.83405 0.78574 1.20238 1.21529 1.18984 1.21070 0.89402 0.94499 1.51052 0.91141 1.19547 0.96670 0.91871 0.96712 1.21998 0.84007 1.00036 0.99491 1.60719 1.09984 1.11405 1.49541 1.21558 0.96230 0.90865 0.93628 0.90206 1.21562 0.96088 0.94733 1.02232 1.20524 1.02065 0.95168 0.94047 1.19650 0.96049 0.94325 0.96211 1.21049 1.00873 0.94166 0.96990 1.20797 0.99379 0.89162 0.97196 1.98362 1.77202 1.31198 1.98168 1.20947 0.97075 0.97034 0.98281 1.21198 0.99563 0.93844 0.97997 1.19748 0.96502 0.96482 0.93351 1.21349 1.00106 0.93769 0.99992 0.92716 0.96885 0.96096 0.91737 0.95929 0.84641 0.91860 0.90174 0.90456 0.90135 0.85140 0.85113 0.85139 0.90284 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.41 5.43 -3.83 -0.02 1.39 16 11 N -0.69 -10.78 6.27 -106.70 -0.67 -11.44 16 12 C 0.09 1.12 2.49 -67.69 -0.17 0.95 16 13 H 0.08 1.10 7.76 -51.93 -0.40 0.69 16 14 C -0.11 -1.16 5.60 -26.71 -0.15 -1.31 16 15 C -0.08 -0.75 5.67 -28.05 -0.16 -0.90 16 16 C -0.06 -0.65 5.74 -104.62 -0.60 -1.25 16 17 C -0.11 -1.11 9.39 -39.41 -0.37 -1.48 16 18 C -0.04 -0.39 6.31 -39.60 -0.25 -0.64 16 19 Cl -0.08 -0.73 28.96 -51.86 -1.50 -2.23 16 20 C -0.11 -1.12 9.84 -39.65 -0.39 -1.51 16 21 C -0.11 -1.09 9.61 -39.45 -0.38 -1.47 16 22 C -0.06 -0.66 5.74 -104.61 -0.60 -1.26 16 23 C -0.11 -1.31 4.99 -28.05 -0.14 -1.45 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 26 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 27 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 28 H 0.02 0.44 7.71 -51.93 -0.40 0.03 16 29 H 0.34 4.97 8.34 -39.29 -0.33 4.65 16 30 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.13 1.08 8.05 -52.48 -0.42 0.65 16 35 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.13 1.13 8.05 -52.49 -0.42 0.71 16 37 H 0.08 0.97 7.74 -51.93 -0.40 0.56 16 38 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -30.17 322.92 -10.65 -40.82 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.67 Total: 0.59 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -3.78 Total: -22.58 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.10 Total: -38.55 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.17 -10.65 -40.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171105786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.762 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds