Wall clock time and date at job start Fri Apr 10 2020 13:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48493 * 109.46942 * 269.99803 * 3 2 1 5 5 H 1.48498 * 109.46726 * 29.99964 * 3 2 1 6 6 H 1.48502 * 109.47210 * 149.99371 * 3 2 1 7 7 C 1.37875 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99991 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00560 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47363 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47380 * 179.97438 * 10 9 7 12 12 C 1.46893 * 111.00548 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.67678 * 34.48440 * 12 11 10 14 14 C 1.53317 * 109.68375 * 155.00226 * 12 11 10 15 15 C 1.52731 * 108.40090 * 189.54634 * 14 12 11 16 16 C 1.50632 * 110.58857 * 308.86638 * 15 14 12 17 17 C 1.38894 * 117.74097 * 197.65421 * 16 15 14 18 18 C 1.38052 * 120.53564 * 180.62906 * 17 16 15 19 19 Cl 1.73602 * 120.12952 * 179.97438 * 18 17 16 20 20 C 1.38374 * 119.74215 * 359.97003 * 18 17 16 21 21 C 1.37909 * 119.76005 * 359.86936 * 20 18 17 22 22 C 1.37672 * 122.56245 * 17.99942 * 16 15 14 23 23 C 1.50626 * 122.54841 * 358.92363 * 22 16 15 24 24 H 0.96998 * 120.00189 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.46826 * 59.99593 * 9 7 2 26 26 H 1.09001 * 109.46840 * 300.00273 * 9 7 2 27 27 H 1.09003 * 109.47299 * 59.99923 * 10 9 7 28 28 H 1.09001 * 109.47157 * 299.99824 * 10 9 7 29 29 H 1.00905 * 110.99493 * 56.04240 * 11 10 9 30 30 H 1.09000 * 109.68120 * 69.81207 * 14 12 11 31 31 H 1.09001 * 109.67421 * 309.27228 * 14 12 11 32 32 H 1.09001 * 109.25202 * 188.58130 * 15 14 12 33 33 H 1.08997 * 109.22367 * 69.13228 * 15 14 12 34 34 H 1.08004 * 119.73193 * 0.60155 * 17 16 15 35 35 H 1.08003 * 120.12142 * 179.90027 * 20 18 17 36 36 H 1.08001 * 119.71983 * 180.02562 * 21 20 18 37 37 H 1.08998 * 109.25863 * 138.31992 * 23 22 16 38 38 H 1.09003 * 109.25487 * 257.74633 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4905 -2.6366 0.0009 12 6 6.0170 -4.0079 0.0002 13 1 5.3588 -4.6535 -0.5812 14 6 7.4235 -4.0207 -0.6099 15 6 7.8460 -5.4738 -0.8169 16 6 7.6552 -6.2665 0.4497 17 6 8.3222 -7.4798 0.5597 18 6 8.1783 -8.2594 1.6899 19 17 9.0164 -9.7745 1.8160 20 6 7.3636 -7.8283 2.7220 21 6 6.7036 -6.6221 2.6150 22 6 6.8491 -5.8356 1.4792 23 6 6.1092 -4.5243 1.4347 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8910 26 1 3.8752 -0.6804 -0.8888 27 1 3.6586 -3.1502 -0.8893 28 1 3.6579 -3.1505 0.8907 29 1 5.8521 -2.1104 0.7824 30 1 8.1218 -3.5283 0.0669 31 1 7.4126 -3.5016 -1.5682 32 1 8.8966 -5.5050 -1.1056 33 1 7.2420 -5.9136 -1.6105 34 1 8.9581 -7.8164 -0.2458 35 1 7.2454 -8.4341 3.6083 36 1 6.0682 -6.2862 3.4211 37 1 5.1038 -4.6652 1.8313 38 1 6.6370 -3.7928 2.0467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171105786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:53 Heat of formation + Delta-G solvation = -23.902991 kcal Electronic energy + Delta-G solvation = -18678.735403 eV Core-core repulsion = 15737.645142 eV Total energy + Delta-G solvation = -2941.090261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17118 -38.57560 -37.39251 -35.85348 -34.57349 -33.36945 -31.81607 -30.43198 -28.79151 -25.91709 -24.45401 -23.31068 -22.92498 -22.32185 -20.41621 -18.95832 -17.69256 -17.05981 -16.65389 -16.30345 -15.95102 -15.60557 -15.34824 -15.09977 -14.68455 -14.57857 -14.35441 -14.23070 -13.84980 -13.40970 -13.16936 -13.03693 -12.92809 -12.79292 -12.23211 -12.18131 -11.95666 -11.88553 -11.84830 -11.70938 -11.42300 -11.40114 -11.25950 -10.76406 -9.80780 -9.45848 -9.26446 -8.29205 -6.33905 0.14197 0.28129 1.13478 1.38951 1.39875 1.52534 2.37675 2.57856 3.06644 3.23333 3.62830 3.79939 3.89108 3.94654 4.11906 4.16459 4.24135 4.43910 4.49271 4.54002 4.61924 4.65113 4.72297 4.84125 4.89685 4.97511 4.99289 5.08023 5.18348 5.24326 5.29405 5.39568 5.39953 5.52214 5.60873 5.64773 5.84619 6.17793 6.26895 6.57129 6.75509 7.31185 8.87547 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040818 B = 0.002903 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.815261 B = 9644.365968 C =10002.727839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.534 4.534 8 H 0.030 0.970 9 C -0.005 4.005 10 C 0.087 3.913 11 N -0.685 5.685 12 C 0.087 3.913 13 H 0.067 0.933 14 C -0.101 4.101 15 C -0.076 4.076 16 C -0.069 4.069 17 C -0.115 4.115 18 C -0.047 4.047 19 Cl -0.073 7.073 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.075 4.075 23 C -0.106 4.106 24 H 0.267 0.733 25 H 0.021 0.979 26 H 0.022 0.978 27 H 0.052 0.948 28 H 0.018 0.982 29 H 0.344 0.656 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.067 0.933 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.053 -15.436 3.392 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.572 4.572 8 H 0.049 0.951 9 C -0.042 4.042 10 C -0.042 4.042 11 N -0.315 5.315 12 C -0.023 4.023 13 H 0.085 0.915 14 C -0.139 4.139 15 C -0.114 4.114 16 C -0.069 4.069 17 C -0.133 4.133 18 C -0.074 4.074 19 Cl -0.044 7.044 20 C -0.137 4.137 21 C -0.132 4.132 22 C -0.075 4.075 23 C -0.145 4.145 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.162 0.838 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.085 0.915 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 22.024 -15.388 2.712 27.004 hybrid contribution -0.679 0.135 1.056 1.262 sum 21.345 -15.253 3.768 26.504 Atomic orbital electron populations 1.70068 1.08375 1.28228 1.52620 1.26028 0.95623 1.03656 0.94006 0.85578 0.79462 0.77916 0.79163 1.19338 1.21107 1.16756 1.21430 0.92093 0.93123 1.50592 0.95130 1.19439 0.93384 0.94586 0.96830 1.21637 0.86547 0.97195 0.98779 1.60638 1.07280 1.13510 1.50066 1.21603 0.97149 0.88929 0.94585 0.91478 1.21489 0.94481 0.95960 1.01937 1.20526 1.03390 0.93796 0.93640 1.19801 0.95961 0.94734 0.96403 1.21232 1.00852 0.93878 0.97378 1.20965 0.99494 0.89471 0.97455 1.98364 1.77062 1.30835 1.98162 1.21149 0.96752 0.97024 0.98818 1.21357 0.99761 0.93983 0.98147 1.19776 0.97168 0.96416 0.94187 1.21210 0.99741 0.94519 0.98982 0.92468 0.96078 0.96012 0.92921 0.96406 0.83790 0.91250 0.90423 0.88358 0.89802 0.83562 0.83676 0.84148 0.91480 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 2 C 0.00 0.21 5.47 84.66 0.46 0.67 16 3 Si 0.96 44.38 27.47 68.60 1.88 46.26 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 7 C -0.53 -30.93 9.66 25.60 0.25 -30.68 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 9 C 0.00 -0.21 4.30 29.85 0.13 -0.08 16 10 C 0.09 3.38 5.43 86.30 0.47 3.85 16 11 N -0.69 -20.59 6.27 -491.50 -3.08 -23.67 16 12 C 0.09 2.13 2.49 44.94 0.11 2.24 16 13 H 0.07 1.81 7.76 -2.39 -0.02 1.80 16 14 C -0.10 -1.95 5.60 30.61 0.17 -1.78 16 15 C -0.08 -1.23 5.67 29.74 0.17 -1.06 16 16 C -0.07 -1.30 5.74 -19.86 -0.11 -1.41 16 17 C -0.11 -2.03 9.39 22.38 0.21 -1.82 16 18 C -0.05 -0.87 6.31 22.26 0.14 -0.73 16 19 Cl -0.07 -1.24 28.96 -2.72 -0.08 -1.32 16 20 C -0.12 -2.13 9.84 22.22 0.22 -1.92 16 21 C -0.11 -2.17 9.61 22.36 0.21 -1.96 16 22 C -0.07 -1.54 5.74 -19.86 -0.11 -1.65 16 23 C -0.11 -2.33 4.99 29.74 0.15 -2.18 16 24 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 25 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 26 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 27 H 0.05 2.14 8.06 -2.39 -0.02 2.12 16 28 H 0.02 0.70 7.71 -2.39 -0.02 0.68 16 29 H 0.34 9.51 8.34 -89.69 -0.75 8.76 16 30 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.10 1.21 8.12 -2.39 -0.02 1.19 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.15 2.04 8.05 -2.91 -0.02 2.02 16 35 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.14 2.28 8.05 -2.91 -0.02 2.26 16 37 H 0.07 1.62 7.74 -2.39 -0.02 1.60 16 38 H 0.09 1.78 7.94 -2.39 -0.02 1.76 16 Total: -1.00 -65.10 322.92 1.73 -63.37 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.25 Total: 13.65 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 2.46 Total: -38.52 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -2.78 Total: -83.44 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -65.10 1.73 -63.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171105786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.463 kcal (2) G-P(sol) polarization free energy of solvation -65.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds