Wall clock time and date at job start Fri Apr 10 2020 13:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99700 * 2 1 4 4 H 1.48499 * 109.47209 * 270.00421 * 3 2 1 5 5 H 1.48500 * 109.47295 * 30.00332 * 3 2 1 6 6 H 1.48503 * 109.47210 * 150.00377 * 3 2 1 7 7 C 1.37872 * 120.00590 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99498 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00736 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 H 1.09008 * 109.68142 * 325.51971 * 12 11 10 14 14 C 1.53329 * 109.67992 * 205.00017 * 12 11 10 15 15 C 1.52729 * 108.39283 * 170.40755 * 14 12 11 16 16 C 1.50637 * 110.60258 * 51.05140 * 15 14 12 17 17 C 1.38899 * 117.74404 * 162.32451 * 16 15 14 18 18 C 1.38044 * 120.53310 * 179.70662 * 17 16 15 19 19 Cl 1.73598 * 120.12247 * 179.97438 * 18 17 16 20 20 C 1.38379 * 119.74710 * 359.97438 * 18 17 16 21 21 C 1.37910 * 119.75594 * 0.12266 * 20 18 17 22 22 C 1.37668 * 122.56330 * 342.26631 * 16 15 14 23 23 C 1.50640 * 122.55869 * 0.74756 * 22 16 15 24 24 H 0.97002 * 120.00416 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 26 26 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 27 27 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 28 28 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 29 29 H 1.00901 * 110.99869 * 56.04956 * 11 10 9 30 30 H 1.08999 * 109.67849 * 290.13119 * 14 12 11 31 31 H 1.08999 * 109.67837 * 50.64581 * 14 12 11 32 32 H 1.09003 * 109.24828 * 171.33975 * 15 14 12 33 33 H 1.08997 * 109.25507 * 290.76201 * 15 14 12 34 34 H 1.08000 * 119.72956 * 359.71676 * 17 16 15 35 35 H 1.08004 * 120.12180 * 180.15096 * 20 18 17 36 36 H 1.08002 * 119.71495 * 180.02562 * 21 20 18 37 37 H 1.08997 * 109.25684 * 221.86043 * 23 22 16 38 38 H 1.08998 * 109.25524 * 102.42673 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4906 -2.6363 -0.0009 12 6 6.0171 -4.0078 -0.0014 13 1 5.3588 -4.6540 0.5794 14 6 7.4237 -4.0211 0.6088 15 6 7.8455 -5.4744 0.8155 16 6 7.6526 -6.2675 -0.4506 17 6 8.3191 -7.4812 -0.5611 18 6 8.1788 -8.2577 -1.6938 19 17 9.0173 -9.7724 -1.8210 20 6 7.3672 -7.8241 -2.7273 21 6 6.7067 -6.6183 -2.6192 22 6 6.8497 -5.8341 -1.4814 23 6 6.1097 -4.5228 -1.4363 24 1 -0.4851 0.8400 0.0004 25 1 3.8751 -0.6803 0.8889 26 1 3.8745 -0.6799 -0.8911 27 1 3.6580 -3.1505 -0.8908 28 1 3.6586 -3.1501 0.8892 29 1 5.8521 -2.1102 0.7804 30 1 8.1221 -3.5289 -0.0680 31 1 7.4131 -3.5016 1.5669 32 1 8.8965 -5.5061 1.1029 33 1 7.2429 -5.9140 1.6102 34 1 8.9521 -7.8200 0.2457 35 1 7.2511 -8.4280 -3.6152 36 1 6.0731 -6.2807 -3.4260 37 1 5.1044 -4.6634 -1.8334 38 1 6.6377 -3.7909 -2.0475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171105788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 13:59:56 Heat of formation + Delta-G solvation = -23.568334 kcal Electronic energy + Delta-G solvation = -18671.340245 eV Core-core repulsion = 15730.264495 eV Total energy + Delta-G solvation = -2941.075750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.14273 -38.54950 -37.38742 -35.86016 -34.54474 -33.38368 -31.87430 -30.37630 -28.87739 -26.05180 -24.40632 -23.28866 -22.94173 -22.15881 -20.30761 -18.94607 -17.75380 -17.05968 -16.80008 -16.29420 -16.03272 -15.55795 -15.29128 -15.07896 -14.69615 -14.54374 -14.30428 -14.25513 -13.82801 -13.49275 -13.23661 -13.08831 -12.91488 -12.75090 -12.25147 -12.16606 -11.92741 -11.89471 -11.83410 -11.62552 -11.42628 -11.34923 -11.27066 -10.76573 -9.79652 -9.43102 -9.32834 -8.29417 -6.34257 0.16092 0.29181 1.14411 1.38836 1.39822 1.52545 2.37528 2.59644 3.06369 3.17933 3.59313 3.80671 3.91894 4.07443 4.10223 4.16424 4.21725 4.46076 4.51831 4.52803 4.60099 4.65421 4.70878 4.88618 4.92568 4.96348 5.00815 5.04130 5.18738 5.24544 5.29641 5.32429 5.39739 5.51210 5.63179 5.64553 5.86436 6.17053 6.26495 6.57252 6.75125 7.30837 8.87351 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040681 B = 0.002903 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.116199 B = 9642.852516 C =10007.886565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.004 4.004 10 C 0.088 3.912 11 N -0.688 5.688 12 C 0.086 3.914 13 H 0.036 0.964 14 C -0.113 4.113 15 C -0.075 4.075 16 C -0.072 4.072 17 C -0.114 4.114 18 C -0.048 4.048 19 Cl -0.073 7.073 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.075 4.075 23 C -0.068 4.068 24 H 0.267 0.733 25 H 0.021 0.979 26 H 0.022 0.978 27 H 0.053 0.947 28 H 0.014 0.986 29 H 0.346 0.654 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.063 0.937 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.242 -15.375 -1.340 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.042 4.042 10 C -0.041 4.041 11 N -0.319 5.319 12 C -0.024 4.024 13 H 0.054 0.946 14 C -0.151 4.151 15 C -0.112 4.112 16 C -0.072 4.072 17 C -0.132 4.132 18 C -0.075 4.075 19 Cl -0.044 7.044 20 C -0.136 4.136 21 C -0.132 4.132 22 C -0.076 4.076 23 C -0.106 4.106 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.165 0.835 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.081 0.919 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 22.221 -15.340 -2.025 27.077 hybrid contribution -0.717 0.160 0.647 0.979 sum 21.503 -15.180 -1.378 26.358 Atomic orbital electron populations 1.70069 1.08385 1.28243 1.52592 1.26032 0.95629 1.03671 0.93977 0.85573 0.79471 0.77870 0.79170 1.19331 1.21083 1.16723 1.21429 0.92104 0.93116 1.50651 0.95197 1.19432 0.93368 0.94502 0.96861 1.21647 0.86558 0.97224 0.98667 1.60475 1.07245 1.13866 1.50350 1.21509 0.96156 0.88959 0.95768 0.94609 1.21705 0.94896 0.96813 1.01689 1.20501 1.03517 0.93466 0.93707 1.19789 0.96182 0.94817 0.96437 1.21218 1.00789 0.93875 0.97358 1.20954 0.99587 0.89508 0.97439 1.98362 1.77034 1.30864 1.98163 1.21151 0.96703 0.96943 0.98822 1.21340 0.99793 0.93963 0.98148 1.19867 0.97100 0.96409 0.94195 1.20419 0.99423 0.93166 0.97549 0.92456 0.96055 0.95944 0.92838 0.96750 0.83458 0.90614 0.89961 0.88151 0.89773 0.83510 0.83633 0.84148 0.91872 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.15 13.96 21.44 0.30 -59.85 16 2 C 0.00 0.21 5.47 84.65 0.46 0.68 16 3 Si 0.96 44.40 27.47 68.60 1.88 46.29 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 7 C -0.53 -31.07 9.66 25.60 0.25 -30.82 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 9 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 10 C 0.09 3.44 5.43 86.30 0.47 3.91 16 11 N -0.69 -20.84 6.32 -491.45 -3.10 -23.95 16 12 C 0.09 2.13 2.51 44.94 0.11 2.24 16 13 H 0.04 0.97 7.76 -2.38 -0.02 0.96 16 14 C -0.11 -2.06 5.36 30.61 0.16 -1.90 16 15 C -0.07 -1.16 5.67 29.74 0.17 -0.99 16 16 C -0.07 -1.38 5.74 -19.86 -0.11 -1.50 16 17 C -0.11 -2.03 9.39 22.38 0.21 -1.82 16 18 C -0.05 -0.91 6.31 22.26 0.14 -0.77 16 19 Cl -0.07 -1.25 28.96 -2.72 -0.08 -1.33 16 20 C -0.12 -2.17 9.84 22.23 0.22 -1.95 16 21 C -0.11 -2.28 9.61 22.36 0.21 -2.06 16 22 C -0.08 -1.62 5.74 -19.85 -0.11 -1.74 16 23 C -0.07 -1.65 5.15 29.74 0.15 -1.50 16 24 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 26 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 27 H 0.05 2.18 7.71 -2.39 -0.02 2.17 16 28 H 0.01 0.58 8.06 -2.39 -0.02 0.56 16 29 H 0.35 9.53 8.24 -89.69 -0.74 8.79 16 30 H 0.08 1.39 8.10 -2.39 -0.02 1.37 16 31 H 0.08 1.32 7.94 -2.39 -0.02 1.30 16 32 H 0.10 1.15 8.12 -2.39 -0.02 1.13 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.15 2.03 8.05 -2.91 -0.02 2.01 16 35 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.14 2.44 8.05 -2.91 -0.02 2.42 16 37 H 0.06 1.69 7.74 -2.39 -0.02 1.67 16 38 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -65.62 322.84 1.72 -63.90 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.26 Total: 13.21 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 2.46 Total: -38.27 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -2.81 Total: -83.80 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.29 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -65.62 1.72 -63.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171105788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.335 kcal (2) G-P(sol) polarization free energy of solvation -65.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds