Wall clock time and date at job start Fri Apr 10 2020 14:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30926 * 1 3 3 Si 1.86795 * 120.00200 * 2 1 4 4 H 1.48504 * 109.47165 * 274.99423 * 3 2 1 5 5 H 1.48500 * 109.47102 * 34.98658 * 3 2 1 6 6 H 1.48493 * 109.47411 * 154.99298 * 3 2 1 7 7 C 1.39827 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99778 * 148.42365 * 7 2 1 9 9 C 1.41103 * 119.99833 * 328.42805 * 7 2 1 10 10 C 1.40903 * 120.14919 * 161.49233 * 9 7 2 11 11 C 1.36298 * 119.83827 * 180.02562 * 10 9 7 12 12 C 1.39629 * 120.15657 * 0.02562 * 11 10 9 13 13 N 1.38760 * 119.84431 * 179.97438 * 12 11 10 14 14 C 1.39238 * 120.00387 * 39.49261 * 13 12 11 15 15 C 1.38305 * 120.21481 * 6.67393 * 14 13 12 16 16 C 1.38735 * 120.44246 * 179.97438 * 15 14 13 17 17 C 1.37711 * 120.69599 * 359.97438 * 16 15 14 18 18 C 1.39290 * 120.03758 * 359.97438 * 17 16 15 19 19 N 1.37151 * 133.67413 * 179.97438 * 18 17 16 20 20 H 0.97003 * 125.95489 * 359.97438 * 19 18 17 21 21 N 1.40014 * 108.08452 * 180.02562 * 19 18 17 22 22 C 1.30174 * 109.73941 * 0.02562 * 21 19 18 23 23 C 1.40673 * 119.74745 * 0.02562 * 18 17 16 24 24 C 1.39616 * 120.30737 * 0.23306 * 12 11 10 25 25 C 1.36304 * 120.15714 * 359.48503 * 24 12 11 26 26 H 0.97006 * 119.99931 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.08207 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.92538 * 179.97438 * 11 10 9 29 29 H 0.97002 * 119.99968 * 219.49160 * 13 12 11 30 30 H 1.07997 * 119.77522 * 0.02562 * 15 14 13 31 31 H 1.08001 * 119.65641 * 180.26194 * 16 15 14 32 32 H 1.08000 * 119.98012 * 179.97438 * 17 16 15 33 33 H 1.08001 * 125.66999 * 180.02562 * 22 21 19 34 34 H 1.08002 * 119.92454 * 179.72260 * 24 12 11 35 35 H 1.08004 * 120.07965 * 180.27856 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.3853 2.1073 -1.3948 5 1 1.4974 2.6199 0.8028 6 1 3.5896 1.4120 0.5918 7 6 2.0084 -1.2109 -0.0005 8 1 2.9684 -1.2799 -0.4903 9 6 1.4595 -2.3428 0.6388 10 6 1.9353 -3.6319 0.3271 11 6 1.4002 -4.7208 0.9481 12 6 0.3825 -4.5611 1.8906 13 7 -0.1580 -5.6742 2.5185 14 6 0.6692 -6.7246 2.9073 15 6 2.0427 -6.6065 2.7963 16 6 2.8714 -7.6499 3.1828 17 6 2.3430 -8.8190 3.6832 18 6 0.9631 -8.9639 3.8065 19 7 0.1534 -9.9757 4.2555 20 1 0.4500 -10.8362 4.5909 21 7 -1.1759 -9.5504 4.1441 22 6 -1.2123 -8.3446 3.6548 23 6 0.1134 -7.9123 3.4177 24 6 -0.0975 -3.2872 2.2003 25 6 0.4324 -2.1890 1.5911 26 1 -0.4850 0.8401 0.0004 27 1 2.7216 -3.7569 -0.4026 28 1 1.7636 -5.7095 0.7100 29 1 -1.1122 -5.7207 2.6866 30 1 2.4730 -5.6957 2.4070 31 1 3.9425 -7.5425 3.0946 32 1 2.9988 -9.6241 3.9801 33 1 -2.1061 -7.7696 3.4627 34 1 -0.8880 -3.1712 2.9270 35 1 0.0633 -1.2037 1.8349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174345042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:48 Heat of formation + Delta-G solvation = 111.359820 kcal Electronic energy + Delta-G solvation = -20003.262136 eV Core-core repulsion = 16966.929817 eV Total energy + Delta-G solvation = -3036.332320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18891 -38.66928 -36.76235 -34.97702 -33.41046 -31.57029 -29.92435 -29.79807 -28.74350 -27.84698 -24.87816 -22.75697 -21.97903 -21.61248 -20.71318 -20.35939 -17.89821 -17.47453 -16.73651 -16.12051 -15.38845 -15.03902 -14.71815 -14.63400 -14.17707 -13.99677 -13.59572 -13.25099 -12.73345 -12.29284 -12.25676 -11.98339 -11.52710 -11.33266 -11.25305 -11.15879 -10.85476 -10.70248 -10.62201 -10.53459 -9.98040 -9.69122 -9.36196 -8.91736 -8.32301 -7.69542 -7.62100 -7.05558 -6.57081 -4.33372 1.29073 1.91193 2.63548 2.77454 2.88856 2.94933 2.99716 3.01835 3.15226 3.81239 3.97032 4.16562 4.41742 4.82367 5.01233 5.19500 5.36063 5.55352 5.71485 5.88345 5.91668 6.11400 6.17194 6.29141 6.54385 6.63807 6.72580 6.85035 6.92380 6.99931 7.03519 7.14514 7.40100 7.44517 7.50941 7.63055 7.75911 7.90192 8.07914 8.20911 8.31743 8.48810 8.73599 8.86723 9.91875 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040837 B = 0.003613 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.484810 B = 7747.417529 C = 8235.594133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.085 3.915 3 Si 0.899 3.101 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.458 4.458 8 H 0.083 0.917 9 C 0.108 3.892 10 C -0.220 4.220 11 C -0.093 4.093 12 C -0.014 4.014 13 N -0.646 5.646 14 C 0.298 3.702 15 C -0.254 4.254 16 C -0.012 4.012 17 C -0.234 4.234 18 C 0.172 3.828 19 N -0.517 5.517 20 H 0.436 0.564 21 N -0.280 5.280 22 C 0.088 3.912 23 C -0.249 4.249 24 C -0.103 4.103 25 C -0.168 4.168 26 H 0.284 0.716 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.396 0.604 30 H 0.144 0.856 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.183 0.817 34 H 0.090 0.910 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 -9.454 5.323 10.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.105 3.895 10 C -0.240 4.240 11 C -0.113 4.113 12 C -0.108 4.108 13 N -0.260 5.260 14 C 0.186 3.814 15 C -0.278 4.278 16 C -0.033 4.033 17 C -0.259 4.259 18 C 0.055 3.945 19 N -0.232 5.232 20 H 0.280 0.720 21 N -0.095 5.095 22 C -0.107 4.107 23 C -0.260 4.260 24 C -0.123 4.123 25 C -0.188 4.188 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.230 0.770 30 H 0.162 0.838 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.200 0.800 34 H 0.108 0.892 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.196 -10.135 5.647 11.604 hybrid contribution 0.472 0.969 -0.079 1.080 sum 0.668 -9.166 5.569 10.746 Atomic orbital electron populations 1.69959 1.08080 1.30009 1.30875 1.25978 0.94424 1.01731 0.91552 0.86452 0.81440 0.80616 0.79281 1.19398 1.19826 1.18025 1.19542 1.04838 0.93613 1.30592 0.89932 1.17596 0.90176 0.91796 0.89928 1.20526 1.06119 0.92265 1.05102 1.20321 0.97763 0.97758 0.95462 1.17006 1.05419 0.85111 1.03235 1.41661 1.08170 1.16335 1.59802 1.17370 0.90592 0.85151 0.88262 1.20932 0.91123 1.02134 1.13627 1.20677 0.99093 0.91307 0.92270 1.19609 0.90203 1.00865 1.15203 1.18598 0.92722 0.88105 0.95075 1.45936 1.02451 1.15762 1.59012 0.72012 1.76593 0.97861 1.13974 1.21041 1.23628 0.96898 0.92810 0.97373 1.18363 0.93137 0.96578 1.17935 1.20237 1.00458 0.91597 1.00010 1.20734 1.01322 0.96990 0.99721 0.90462 0.88589 0.88150 0.77000 0.83845 0.85874 0.86821 0.79992 0.89224 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.56 11.47 55.54 0.64 -17.92 16 2 C 0.09 2.01 4.84 -17.34 -0.08 1.92 16 3 Si 0.90 17.40 29.66 -169.99 -5.04 12.36 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.46 -11.45 8.95 -37.90 -0.34 -11.79 16 8 H 0.08 1.98 8.01 -52.49 -0.42 1.56 16 9 C 0.11 2.70 5.61 -106.79 -0.60 2.10 16 10 C -0.22 -5.07 9.74 -39.27 -0.38 -5.45 16 11 C -0.09 -1.97 7.24 -39.76 -0.29 -2.26 16 12 C -0.01 -0.30 5.97 -83.69 -0.50 -0.80 16 13 N -0.65 -11.18 5.43 -8.13 -0.04 -11.23 16 14 C 0.30 5.04 6.47 -83.54 -0.54 4.50 16 15 C -0.25 -4.25 7.93 -39.37 -0.31 -4.56 16 16 C -0.01 -0.17 10.01 -39.59 -0.40 -0.56 16 17 C -0.23 -3.17 10.07 -39.38 -0.40 -3.57 16 18 C 0.17 2.55 7.32 -84.18 -0.62 1.93 16 19 N -0.52 -6.81 7.44 32.35 0.24 -6.57 16 20 H 0.44 4.25 8.96 -182.66 -1.64 2.62 16 21 N -0.28 -4.05 12.57 30.85 0.39 -3.66 16 22 C 0.09 1.24 11.76 -17.03 -0.20 1.04 16 23 C -0.25 -3.91 6.10 -106.82 -0.65 -4.56 16 24 C -0.10 -2.24 9.90 -39.76 -0.39 -2.63 16 25 C -0.17 -4.07 8.74 -39.27 -0.34 -4.42 16 26 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 27 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 28 H 0.10 1.98 6.36 -52.49 -0.33 1.64 16 29 H 0.40 5.92 8.61 -40.82 -0.35 5.57 16 30 H 0.14 2.61 5.10 -52.49 -0.27 2.34 16 31 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 32 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.11 2.80 6.24 -52.48 -0.33 2.47 16 LS Contribution 300.40 15.07 4.53 4.53 Total: -1.00 -27.36 300.40 -9.92 -37.28 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -4.59 Total: 14.31 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -6.04 Total: -29.10 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 1.22 Total: -39.38 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.04 Total: 12.36 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.36 -9.92 -37.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174345042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.645 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds