Wall clock time and date at job start Fri Apr 10 2020 14:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30926 * 1 3 3 Si 1.86795 * 120.00200 * 2 1 4 4 H 1.48504 * 109.47165 * 274.99423 * 3 2 1 5 5 H 1.48500 * 109.47102 * 34.98658 * 3 2 1 6 6 H 1.48493 * 109.47411 * 154.99298 * 3 2 1 7 7 C 1.39827 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99778 * 148.42365 * 7 2 1 9 9 C 1.41103 * 119.99833 * 328.42805 * 7 2 1 10 10 C 1.40903 * 120.14919 * 161.49233 * 9 7 2 11 11 C 1.36298 * 119.83827 * 180.02562 * 10 9 7 12 12 C 1.39629 * 120.15657 * 0.02562 * 11 10 9 13 13 N 1.38760 * 119.84431 * 179.97438 * 12 11 10 14 14 C 1.39238 * 120.00387 * 39.49261 * 13 12 11 15 15 C 1.38305 * 120.21481 * 6.67393 * 14 13 12 16 16 C 1.38735 * 120.44246 * 179.97438 * 15 14 13 17 17 C 1.37711 * 120.69599 * 359.97438 * 16 15 14 18 18 C 1.39290 * 120.03758 * 359.97438 * 17 16 15 19 19 N 1.37151 * 133.67413 * 179.97438 * 18 17 16 20 20 H 0.97003 * 125.95489 * 359.97438 * 19 18 17 21 21 N 1.40014 * 108.08452 * 180.02562 * 19 18 17 22 22 C 1.30174 * 109.73941 * 0.02562 * 21 19 18 23 23 C 1.40673 * 119.74745 * 0.02562 * 18 17 16 24 24 C 1.39616 * 120.30737 * 0.23306 * 12 11 10 25 25 C 1.36304 * 120.15714 * 359.48503 * 24 12 11 26 26 H 0.97006 * 119.99931 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.08207 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.92538 * 179.97438 * 11 10 9 29 29 H 0.97002 * 119.99968 * 219.49160 * 13 12 11 30 30 H 1.07997 * 119.77522 * 0.02562 * 15 14 13 31 31 H 1.08001 * 119.65641 * 180.26194 * 16 15 14 32 32 H 1.08000 * 119.98012 * 179.97438 * 17 16 15 33 33 H 1.08001 * 125.66999 * 180.02562 * 22 21 19 34 34 H 1.08002 * 119.92454 * 179.72260 * 24 12 11 35 35 H 1.08004 * 120.07965 * 180.27856 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.3853 2.1073 -1.3948 5 1 1.4974 2.6199 0.8028 6 1 3.5896 1.4120 0.5918 7 6 2.0084 -1.2109 -0.0005 8 1 2.9684 -1.2799 -0.4903 9 6 1.4595 -2.3428 0.6388 10 6 1.9353 -3.6319 0.3271 11 6 1.4002 -4.7208 0.9481 12 6 0.3825 -4.5611 1.8906 13 7 -0.1580 -5.6742 2.5185 14 6 0.6692 -6.7246 2.9073 15 6 2.0427 -6.6065 2.7963 16 6 2.8714 -7.6499 3.1828 17 6 2.3430 -8.8190 3.6832 18 6 0.9631 -8.9639 3.8065 19 7 0.1534 -9.9757 4.2555 20 1 0.4500 -10.8362 4.5909 21 7 -1.1759 -9.5504 4.1441 22 6 -1.2123 -8.3446 3.6548 23 6 0.1134 -7.9123 3.4177 24 6 -0.0975 -3.2872 2.2003 25 6 0.4324 -2.1890 1.5911 26 1 -0.4850 0.8401 0.0004 27 1 2.7216 -3.7569 -0.4026 28 1 1.7636 -5.7095 0.7100 29 1 -1.1122 -5.7207 2.6866 30 1 2.4730 -5.6957 2.4070 31 1 3.9425 -7.5425 3.0946 32 1 2.9988 -9.6241 3.9801 33 1 -2.1061 -7.7696 3.4627 34 1 -0.8880 -3.1712 2.9270 35 1 0.0633 -1.2037 1.8349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174345042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:48 Heat of formation + Delta-G solvation = 96.810382 kcal Electronic energy + Delta-G solvation = -20003.893047 eV Core-core repulsion = 16966.929817 eV Total energy + Delta-G solvation = -3036.963231 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.33315 -40.20572 -38.19087 -36.38731 -35.02773 -32.81061 -31.59018 -31.19082 -30.17425 -29.18164 -26.54800 -23.95949 -23.35757 -23.05430 -22.09858 -21.88078 -19.34408 -19.02979 -18.12402 -17.41785 -17.05582 -16.32383 -15.95594 -15.86322 -15.51802 -15.33906 -15.19997 -14.55404 -14.26574 -13.92144 -13.87041 -13.55178 -12.91604 -12.87343 -12.75918 -12.44301 -12.30159 -12.16218 -11.89321 -11.85901 -11.62049 -11.30159 -10.94878 -10.41911 -9.54840 -9.43058 -9.17989 -8.76944 -7.97396 -6.14579 0.12348 0.66542 1.03231 1.15278 1.40300 1.49119 1.58738 1.67119 1.88059 2.20704 2.59982 2.65076 3.00809 3.71749 3.79431 3.90656 4.10212 4.22762 4.42174 4.45797 4.64749 4.66604 4.80627 5.00665 5.12583 5.12871 5.23127 5.33112 5.38262 5.49571 5.65496 5.68635 5.76305 5.89611 6.02093 6.09622 6.31209 6.47058 6.55804 6.67739 6.76100 6.93056 6.93345 7.12929 8.22063 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040837 B = 0.003613 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.484810 B = 7747.417529 C = 8235.594133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.049 3.951 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.078 0.922 9 C 0.078 3.922 10 C -0.232 4.232 11 C -0.093 4.093 12 C 0.010 3.990 13 N -0.650 5.650 14 C 0.281 3.719 15 C -0.271 4.271 16 C -0.014 4.014 17 C -0.218 4.218 18 C 0.160 3.840 19 N -0.507 5.507 20 H 0.451 0.549 21 N -0.289 5.289 22 C 0.085 3.915 23 C -0.259 4.259 24 C -0.110 4.110 25 C -0.188 4.188 26 H 0.292 0.708 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.408 0.592 30 H 0.125 0.875 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.209 0.791 34 H 0.110 0.890 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 -11.211 6.403 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.170 4.170 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.527 4.527 8 H 0.096 0.904 9 C 0.075 3.925 10 C -0.252 4.252 11 C -0.113 4.113 12 C -0.084 4.084 13 N -0.267 5.267 14 C 0.172 3.828 15 C -0.296 4.296 16 C -0.036 4.036 17 C -0.242 4.242 18 C 0.042 3.958 19 N -0.223 5.223 20 H 0.298 0.702 21 N -0.104 5.104 22 C -0.110 4.110 23 C -0.271 4.271 24 C -0.130 4.130 25 C -0.208 4.208 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.134 0.866 29 H 0.244 0.756 30 H 0.142 0.858 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.226 0.774 34 H 0.128 0.872 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.533 -11.964 6.752 13.748 hybrid contribution 0.358 1.164 -0.289 1.252 sum 0.892 -10.800 6.463 12.618 Atomic orbital electron populations 1.69974 1.09370 1.31264 1.31844 1.26729 0.95064 1.04554 0.90651 0.85377 0.79709 0.76281 0.79546 1.18550 1.18933 1.18271 1.19740 1.05302 0.95092 1.32610 0.90383 1.17896 0.91109 0.92702 0.90767 1.20689 1.06563 0.92351 1.05636 1.20465 0.97830 0.97849 0.95190 1.17036 1.03896 0.85789 1.01715 1.41468 1.08857 1.15719 1.60647 1.17462 0.90659 0.85345 0.89331 1.20968 0.91592 1.02413 1.14606 1.20973 1.00299 0.90710 0.91605 1.20002 0.90162 1.01178 1.12871 1.18870 0.93354 0.88335 0.95251 1.45978 1.01860 1.16134 1.58310 0.70236 1.76577 0.98560 1.14220 1.21086 1.24076 0.97359 0.92751 0.96810 1.18553 0.94264 0.96371 1.17867 1.20449 1.00930 0.91499 1.00139 1.20701 1.02195 0.97177 1.00750 0.89676 0.88206 0.86637 0.75644 0.85775 0.83196 0.83564 0.77410 0.87160 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.06 11.47 21.81 0.25 -39.81 16 2 C 0.05 2.38 4.84 85.21 0.41 2.79 16 3 Si 0.97 36.44 29.66 68.60 2.03 38.48 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 5 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 6 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.50 -26.09 8.95 23.36 0.21 -25.88 16 8 H 0.08 3.95 8.01 -2.91 -0.02 3.93 16 9 C 0.08 4.06 5.61 -21.27 -0.12 3.95 16 10 C -0.23 -11.04 9.74 22.47 0.22 -10.82 16 11 C -0.09 -3.97 7.24 22.15 0.16 -3.81 16 12 C 0.01 0.41 5.97 38.71 0.23 0.64 16 13 N -0.65 -21.74 5.43 -179.63 -0.97 -22.72 16 14 C 0.28 9.08 6.47 38.59 0.25 9.33 16 15 C -0.27 -8.71 7.93 22.40 0.18 -8.53 16 16 C -0.01 -0.37 10.01 22.26 0.22 -0.15 16 17 C -0.22 -5.10 10.07 22.40 0.23 -4.88 16 18 C 0.16 4.24 7.32 39.16 0.29 4.52 16 19 N -0.51 -11.75 7.44 -51.56 -0.38 -12.13 16 20 H 0.45 7.29 8.96 -213.37 -1.91 5.37 16 21 N -0.29 -7.59 12.57 -56.31 -0.71 -8.29 16 22 C 0.09 2.18 11.76 85.73 1.01 3.18 16 23 C -0.26 -7.56 6.10 -21.29 -0.13 -7.69 16 24 C -0.11 -4.82 9.90 22.15 0.22 -4.60 16 25 C -0.19 -9.47 8.74 22.47 0.20 -9.28 16 26 H 0.29 13.07 8.30 -92.70 -0.77 12.30 16 27 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 28 H 0.12 4.50 6.36 -2.91 -0.02 4.49 16 29 H 0.41 11.56 8.61 -92.71 -0.80 10.76 16 30 H 0.12 4.47 5.10 -2.91 -0.01 4.46 16 31 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.21 3.92 8.06 -2.91 -0.02 3.89 16 34 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.10 5.09 6.24 -2.91 -0.02 5.07 16 Total: -1.00 -59.97 300.40 2.24 -57.73 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -1.55 Total: 37.96 kcal Atomic # 6 Polarization: -54.79 SS G_CDS: 3.57 Total: -51.22 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.82 Total: -82.95 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.48 kcal Total: -59.97 2.24 -57.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174345042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.545 kcal (2) G-P(sol) polarization free energy of solvation -59.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds