Wall clock time and date at job start Fri Apr 10 2020 14:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30919 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48497 * 109.47097 * 240.00020 * 3 2 1 5 5 H 1.48501 * 109.46838 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47028 * 119.99589 * 3 2 1 7 7 C 1.39834 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00172 * 192.60697 * 7 2 1 9 9 C 1.41098 * 119.99757 * 12.60876 * 7 2 1 10 10 C 1.40911 * 120.14810 * 206.59026 * 9 7 2 11 11 C 1.36303 * 119.83724 * 180.02562 * 10 9 7 12 12 C 1.39621 * 120.15798 * 0.02805 * 11 10 9 13 13 N 1.38753 * 119.84545 * 179.97438 * 12 11 10 14 14 C 1.39650 * 120.00089 * 188.01987 * 13 12 11 15 15 C 1.38590 * 120.16068 * 254.39461 * 14 13 12 16 16 C 1.38649 * 120.36004 * 180.27519 * 15 14 13 17 17 C 1.37649 * 120.60156 * 359.50492 * 16 15 14 18 18 C 1.39889 * 119.92636 * 0.47492 * 17 16 15 19 19 N 1.35782 * 133.52157 * 179.75454 * 18 17 16 20 20 C 1.30133 * 109.64833 * 180.02562 * 19 18 17 21 21 N 1.35961 * 110.07718 * 0.02562 * 20 19 18 22 22 H 0.96991 * 126.35753 * 180.02562 * 21 20 19 23 23 C 1.38151 * 107.28201 * 0.02562 * 21 20 19 24 24 C 1.39621 * 120.30894 * 0.22640 * 12 11 10 25 25 C 1.36299 * 120.15425 * 359.48460 * 24 12 11 26 26 H 0.96996 * 120.00447 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.08136 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.91839 * 179.97438 * 11 10 9 29 29 H 0.96993 * 119.99981 * 8.02133 * 13 12 11 30 30 H 1.08002 * 119.82137 * 0.02562 * 15 14 13 31 31 H 1.07997 * 119.69726 * 179.72626 * 16 15 14 32 32 H 1.08005 * 120.03769 * 180.23268 * 17 16 15 33 33 H 1.08007 * 124.95610 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.92491 * 179.72236 * 24 12 11 35 35 H 1.08003 * 120.08158 * 180.25074 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0970 1.6964 -1.2125 5 1 1.2782 2.7464 -0.0006 6 1 3.0969 1.6964 1.2126 7 6 2.0084 -1.2110 0.0005 8 1 3.0688 -1.2222 0.2047 9 6 1.3284 -2.4183 -0.2657 10 6 1.8164 -3.6345 0.2523 11 6 1.1548 -4.7971 -0.0093 12 6 -0.0035 -4.7849 -0.7888 13 7 -0.6716 -5.9724 -1.0514 14 6 -1.7291 -5.9916 -1.9633 15 6 -3.0359 -6.0892 -1.5121 16 6 -4.0886 -6.1144 -2.4140 17 6 -3.8536 -6.0328 -3.7678 18 6 -2.5419 -5.9334 -4.2437 19 7 -2.0023 -5.8441 -5.4865 20 6 -0.7061 -5.7723 -5.3966 21 7 -0.3258 -5.8111 -4.0919 22 1 0.5835 -5.7731 -3.7566 23 6 -1.4751 -5.9147 -3.3323 24 6 -0.4897 -3.5842 -1.3096 25 6 0.1585 -2.4135 -1.0511 26 1 -0.4850 0.8400 -0.0004 27 1 2.7126 -3.6454 0.8550 28 1 1.5280 -5.7300 0.3867 29 1 -0.4041 -6.7890 -0.6017 30 1 -3.2350 -6.1501 -0.4523 31 1 -5.1025 -6.1952 -2.0508 32 1 -4.6807 -6.0495 -4.4621 33 1 -0.0310 -5.6941 -6.2361 34 1 -1.3838 -3.5826 -1.9154 35 1 -0.2209 -1.4848 -1.4512 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213030518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:40 Heat of formation + Delta-G solvation = 97.139636 kcal Electronic energy + Delta-G solvation = -20409.452844 eV Core-core repulsion = 17372.503891 eV Total energy + Delta-G solvation = -3036.948953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.88069 -38.40250 -36.99882 -34.99427 -33.23396 -32.06557 -29.59979 -29.49838 -29.14774 -27.75665 -24.60886 -22.83048 -22.12761 -21.44588 -20.96233 -20.03739 -17.85515 -17.31155 -16.98744 -16.39446 -15.78074 -15.07118 -14.87283 -14.76129 -14.24051 -13.92156 -13.52168 -12.91657 -12.77673 -12.24152 -12.15762 -11.81998 -11.67345 -11.45678 -11.35127 -11.09732 -11.03039 -10.63433 -10.41295 -9.99696 -9.80937 -9.45152 -9.38800 -8.83496 -8.21613 -7.79154 -7.61650 -6.71633 -6.55212 -4.18897 1.12961 1.73162 2.81249 2.96403 3.00227 3.09256 3.11665 3.17562 3.25396 3.97870 4.01306 4.14840 4.41387 4.67726 4.95672 5.25680 5.41866 5.54657 5.65150 5.73222 5.91660 6.07405 6.14284 6.22951 6.51614 6.66822 6.71222 6.84416 6.85708 7.02711 7.08937 7.24633 7.46581 7.51521 7.57816 7.73618 7.99259 8.04970 8.19944 8.38991 8.53054 8.66544 8.95185 9.01832 10.29605 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.004543 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.787203 B = 6161.952903 C = 6355.165678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.464 4.464 8 H 0.073 0.927 9 C 0.081 3.919 10 C -0.192 4.192 11 C -0.148 4.148 12 C 0.071 3.929 13 N -0.715 5.715 14 C 0.190 3.810 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.084 4.084 18 C 0.049 3.951 19 N -0.504 5.504 20 C 0.256 3.744 21 N -0.587 5.587 22 H 0.426 0.574 23 C 0.046 3.954 24 C -0.147 4.147 25 C -0.125 4.125 26 H 0.278 0.722 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.394 0.606 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.212 0.788 34 H 0.087 0.913 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.958 -9.843 -5.665 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.495 4.495 8 H 0.091 0.909 9 C 0.079 3.921 10 C -0.212 4.212 11 C -0.170 4.170 12 C -0.024 4.024 13 N -0.348 5.348 14 C 0.093 3.907 15 C -0.146 4.146 16 C -0.137 4.137 17 C -0.104 4.104 18 C -0.070 4.070 19 N -0.225 5.225 20 C -0.032 4.032 21 N -0.197 5.197 22 H 0.265 0.735 23 C -0.067 4.067 24 C -0.169 4.169 25 C -0.145 4.145 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.229 0.771 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.229 0.771 34 H 0.105 0.895 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.743 -9.556 -6.491 12.143 hybrid contribution 1.424 0.617 1.128 1.919 sum -2.319 -8.938 -5.363 10.679 Atomic orbital electron populations 1.69815 1.07317 1.28878 1.37432 1.25829 0.94775 1.01029 0.92690 0.86381 0.80006 0.80594 0.79746 1.19073 1.20449 1.19172 1.19375 0.96177 0.90777 1.43179 0.90882 1.17553 0.92312 0.92109 0.90173 1.20552 1.02265 0.92849 1.05566 1.19817 0.96116 0.97244 1.03797 1.17326 0.95192 0.84815 1.05028 1.41269 1.36211 1.09039 1.48238 1.16421 0.88434 1.01295 0.84569 1.21225 0.90779 1.02585 0.99988 1.20732 0.98817 1.02007 0.92188 1.20177 0.93379 1.01656 0.95172 1.18996 0.93664 1.05827 0.88494 1.70432 1.06315 1.22450 1.23282 1.25279 0.92898 0.98725 0.86257 1.43147 1.09115 1.60778 1.06658 0.73471 1.19438 0.86992 1.06677 0.93610 1.20147 1.00378 0.91996 1.04343 1.21028 0.97756 0.96288 0.99440 0.91087 0.88874 0.89423 0.77118 0.85335 0.85471 0.85701 0.77117 0.89519 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.27 10.78 55.54 0.60 -20.67 16 2 C 0.07 1.83 5.23 -17.34 -0.09 1.74 16 3 Si 0.91 18.96 29.58 -169.99 -5.03 13.94 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -12.30 9.04 -37.90 -0.34 -12.65 16 8 H 0.07 1.86 7.87 -52.49 -0.41 1.44 16 9 C 0.08 2.14 5.57 -106.79 -0.59 1.54 16 10 C -0.19 -4.55 9.74 -39.27 -0.38 -4.94 16 11 C -0.15 -3.13 9.83 -39.76 -0.39 -3.52 16 12 C 0.07 1.47 6.60 -83.70 -0.55 0.92 16 13 N -0.72 -12.09 5.37 -8.27 -0.04 -12.13 16 14 C 0.19 3.13 4.52 -83.71 -0.38 2.75 16 15 C -0.12 -1.84 9.96 -39.30 -0.39 -2.23 16 16 C -0.12 -1.54 10.00 -39.64 -0.40 -1.94 16 17 C -0.08 -1.21 10.10 -39.18 -0.40 -1.60 16 18 C 0.05 0.81 7.23 -84.72 -0.61 0.19 16 19 N -0.50 -7.98 11.27 -12.07 -0.14 -8.11 16 20 C 0.26 3.28 12.97 -89.84 -1.17 2.11 16 21 N -0.59 -8.29 6.23 -11.65 -0.07 -8.36 16 22 H 0.43 5.50 8.96 -40.82 -0.37 5.13 16 23 C 0.05 0.75 6.73 -83.78 -0.56 0.18 16 24 C -0.15 -3.42 9.10 -39.76 -0.36 -3.78 16 25 C -0.13 -3.24 8.62 -39.27 -0.34 -3.58 16 26 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 27 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 28 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.39 5.79 8.83 -40.82 -0.36 5.43 16 30 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.21 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.09 2.02 6.78 -52.49 -0.36 1.66 16 35 H 0.12 3.34 6.11 -52.48 -0.32 3.02 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -30.02 304.97 -10.53 -40.55 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -3.49 Total: 14.98 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -6.96 Total: -24.79 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.35 Total: -49.27 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.02 -10.53 -40.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213030518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.688 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds