Wall clock time and date at job start Fri Apr 10 2020 14:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30919 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48497 * 109.47097 * 240.00020 * 3 2 1 5 5 H 1.48501 * 109.46838 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47028 * 119.99589 * 3 2 1 7 7 C 1.39834 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00172 * 192.60697 * 7 2 1 9 9 C 1.41098 * 119.99757 * 12.60876 * 7 2 1 10 10 C 1.40911 * 120.14810 * 206.59026 * 9 7 2 11 11 C 1.36303 * 119.83724 * 180.02562 * 10 9 7 12 12 C 1.39621 * 120.15798 * 0.02805 * 11 10 9 13 13 N 1.38753 * 119.84545 * 179.97438 * 12 11 10 14 14 C 1.39650 * 120.00089 * 188.01987 * 13 12 11 15 15 C 1.38590 * 120.16068 * 254.39461 * 14 13 12 16 16 C 1.38649 * 120.36004 * 180.27519 * 15 14 13 17 17 C 1.37649 * 120.60156 * 359.50492 * 16 15 14 18 18 C 1.39889 * 119.92636 * 0.47492 * 17 16 15 19 19 N 1.35782 * 133.52157 * 179.75454 * 18 17 16 20 20 C 1.30133 * 109.64833 * 180.02562 * 19 18 17 21 21 N 1.35961 * 110.07718 * 0.02562 * 20 19 18 22 22 H 0.96991 * 126.35753 * 180.02562 * 21 20 19 23 23 C 1.38151 * 107.28201 * 0.02562 * 21 20 19 24 24 C 1.39621 * 120.30894 * 0.22640 * 12 11 10 25 25 C 1.36299 * 120.15425 * 359.48460 * 24 12 11 26 26 H 0.96996 * 120.00447 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.08136 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.91839 * 179.97438 * 11 10 9 29 29 H 0.96993 * 119.99981 * 8.02133 * 13 12 11 30 30 H 1.08002 * 119.82137 * 0.02562 * 15 14 13 31 31 H 1.07997 * 119.69726 * 179.72626 * 16 15 14 32 32 H 1.08005 * 120.03769 * 180.23268 * 17 16 15 33 33 H 1.08007 * 124.95610 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.92491 * 179.72236 * 24 12 11 35 35 H 1.08003 * 120.08158 * 180.25074 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0970 1.6964 -1.2125 5 1 1.2782 2.7464 -0.0006 6 1 3.0969 1.6964 1.2126 7 6 2.0084 -1.2110 0.0005 8 1 3.0688 -1.2222 0.2047 9 6 1.3284 -2.4183 -0.2657 10 6 1.8164 -3.6345 0.2523 11 6 1.1548 -4.7971 -0.0093 12 6 -0.0035 -4.7849 -0.7888 13 7 -0.6716 -5.9724 -1.0514 14 6 -1.7291 -5.9916 -1.9633 15 6 -3.0359 -6.0892 -1.5121 16 6 -4.0886 -6.1144 -2.4140 17 6 -3.8536 -6.0328 -3.7678 18 6 -2.5419 -5.9334 -4.2437 19 7 -2.0023 -5.8441 -5.4865 20 6 -0.7061 -5.7723 -5.3966 21 7 -0.3258 -5.8111 -4.0919 22 1 0.5835 -5.7731 -3.7566 23 6 -1.4751 -5.9147 -3.3323 24 6 -0.4897 -3.5842 -1.3096 25 6 0.1585 -2.4135 -1.0511 26 1 -0.4850 0.8400 -0.0004 27 1 2.7126 -3.6454 0.8550 28 1 1.5280 -5.7300 0.3867 29 1 -0.4041 -6.7890 -0.6017 30 1 -3.2350 -6.1501 -0.4523 31 1 -5.1025 -6.1952 -2.0508 32 1 -4.6807 -6.0495 -4.4621 33 1 -0.0310 -5.6941 -6.2361 34 1 -1.3838 -3.5826 -1.9154 35 1 -0.2209 -1.4848 -1.4512 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213030518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:40 Heat of formation + Delta-G solvation = 80.892498 kcal Electronic energy + Delta-G solvation = -20410.157373 eV Core-core repulsion = 17372.503891 eV Total energy + Delta-G solvation = -3037.653482 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.99950 -40.01307 -38.36270 -36.48800 -34.91321 -33.33191 -31.41539 -31.09246 -30.26731 -29.23955 -26.36594 -24.04101 -23.29103 -23.06803 -22.50958 -21.52176 -19.21772 -19.01440 -18.20332 -17.97999 -16.93288 -16.85609 -16.08061 -16.03000 -15.65001 -15.36312 -14.66449 -14.56733 -14.54036 -13.97053 -13.74621 -13.42419 -13.00981 -12.79679 -12.76585 -12.68365 -12.56006 -12.34664 -11.65440 -11.58948 -11.30708 -11.20773 -11.07952 -10.55576 -9.47579 -9.34077 -9.00988 -8.55569 -8.27418 -6.11255 -0.00886 0.59169 1.04572 1.13752 1.38637 1.49712 1.54800 1.87717 2.12503 2.24482 2.70512 2.80897 2.93633 3.42523 3.78306 3.92541 4.17877 4.36672 4.39009 4.45975 4.46953 4.59999 4.83332 4.89531 5.02309 5.13669 5.23670 5.38467 5.44239 5.52541 5.57626 5.65916 5.74782 5.89793 5.93611 6.14335 6.34284 6.47368 6.62595 6.81459 6.91564 7.03446 7.08704 7.18635 8.45215 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.004543 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.787203 B = 6161.952903 C = 6355.165678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.029 3.971 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.501 4.501 8 H 0.072 0.928 9 C 0.044 3.956 10 C -0.194 4.194 11 C -0.149 4.149 12 C 0.103 3.897 13 N -0.701 5.701 14 C 0.162 3.838 15 C -0.126 4.126 16 C -0.110 4.110 17 C -0.091 4.091 18 C 0.025 3.975 19 N -0.535 5.535 20 C 0.269 3.731 21 N -0.590 5.590 22 H 0.430 0.570 23 C 0.026 3.974 24 C -0.154 4.154 25 C -0.144 4.144 26 H 0.281 0.719 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.407 0.593 30 H 0.140 0.860 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.258 0.742 34 H 0.082 0.918 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 -11.084 -5.878 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.183 4.183 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.532 4.532 8 H 0.090 0.910 9 C 0.041 3.959 10 C -0.214 4.214 11 C -0.171 4.171 12 C 0.006 3.994 13 N -0.333 5.333 14 C 0.065 3.935 15 C -0.147 4.147 16 C -0.131 4.131 17 C -0.110 4.110 18 C -0.093 4.093 19 N -0.257 5.257 20 C -0.018 4.018 21 N -0.200 5.200 22 H 0.270 0.730 23 C -0.087 4.087 24 C -0.176 4.176 25 C -0.165 4.165 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.143 0.857 29 H 0.245 0.755 30 H 0.158 0.842 31 H 0.179 0.821 32 H 0.161 0.839 33 H 0.274 0.726 34 H 0.100 0.900 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.784 -10.851 -6.705 13.305 hybrid contribution 1.332 0.769 1.110 1.897 sum -2.452 -10.082 -5.595 11.788 Atomic orbital electron populations 1.69906 1.08773 1.29786 1.38851 1.26649 0.95505 1.04256 0.91881 0.85306 0.78646 0.76150 0.79894 1.18648 1.19729 1.18431 1.19626 0.96360 0.92007 1.45223 0.90977 1.17836 0.93175 0.93309 0.91560 1.20781 1.02611 0.92932 1.05116 1.20112 0.95715 0.97928 1.03338 1.17326 0.94365 0.85346 1.02371 1.41115 1.35902 1.08175 1.48126 1.16630 0.88786 1.03510 0.84553 1.21480 0.90594 1.01700 1.00975 1.21083 1.00047 1.00444 0.91482 1.20553 0.93367 1.00959 0.96145 1.19435 0.94589 1.06379 0.88916 1.70440 1.07753 1.24215 1.23252 1.26223 0.92807 0.95961 0.86833 1.43236 1.08908 1.60830 1.07009 0.72986 1.19577 0.87910 1.07423 0.93812 1.20058 1.00251 0.92295 1.04975 1.20873 0.98652 0.96278 1.00656 0.90824 0.87969 0.85715 0.75507 0.84203 0.82067 0.83949 0.72612 0.90004 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.20 10.78 21.81 0.24 -45.96 16 2 C 0.03 1.49 5.23 85.22 0.45 1.94 16 3 Si 0.98 39.62 29.58 68.60 2.03 41.65 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.50 -27.41 9.04 23.36 0.21 -27.19 16 8 H 0.07 3.78 7.87 -2.91 -0.02 3.75 16 9 C 0.04 2.37 5.57 -21.27 -0.12 2.25 16 10 C -0.19 -9.15 9.74 22.47 0.22 -8.93 16 11 C -0.15 -6.02 9.83 22.15 0.22 -5.80 16 12 C 0.10 4.12 6.60 38.71 0.26 4.37 16 13 N -0.70 -22.28 5.37 -180.09 -0.97 -23.24 16 14 C 0.16 5.08 4.52 38.27 0.17 5.26 16 15 C -0.13 -3.49 9.96 22.45 0.22 -3.27 16 16 C -0.11 -2.65 10.00 22.23 0.22 -2.43 16 17 C -0.09 -2.46 10.10 22.53 0.23 -2.23 16 18 C 0.03 0.80 7.23 39.44 0.29 1.09 16 19 N -0.54 -16.30 11.27 -192.11 -2.17 -18.47 16 20 C 0.27 6.40 12.97 180.07 2.34 8.74 16 21 N -0.59 -15.89 6.23 -190.77 -1.19 -17.08 16 22 H 0.43 10.55 8.96 -92.71 -0.83 9.71 16 23 C 0.03 0.81 6.73 38.95 0.26 1.07 16 24 C -0.15 -7.22 9.10 22.15 0.20 -7.02 16 25 C -0.14 -7.74 8.62 22.47 0.19 -7.55 16 26 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 27 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 28 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 29 H 0.41 10.84 8.83 -92.71 -0.82 10.02 16 30 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 31 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.26 3.21 8.06 -2.91 -0.02 3.18 16 34 H 0.08 3.87 6.78 -2.91 -0.02 3.85 16 35 H 0.10 5.58 6.11 -2.91 -0.02 5.56 16 Total: -1.00 -67.09 304.97 2.80 -64.29 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -0.50 Total: 38.51 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 5.35 Total: -39.70 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -4.09 Total: -104.75 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -67.09 2.80 -64.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213030518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.184 kcal (2) G-P(sol) polarization free energy of solvation -67.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds