Wall clock time and date at job start Fri Apr 10 2020 14:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99921 * 2 1 4 4 H 1.48501 * 109.47234 * 270.00567 * 3 2 1 5 5 H 1.48505 * 109.47421 * 30.00435 * 3 2 1 6 6 H 1.48494 * 109.47411 * 150.00643 * 3 2 1 7 7 C 1.37880 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99774 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.50007 * 59.99960 * 9 7 2 11 11 C 1.53039 * 109.49530 * 299.93494 * 9 7 2 12 12 C 1.53049 * 109.53353 * 178.65349 * 11 9 7 13 13 C 1.53187 * 109.31497 * 61.36666 * 12 11 9 14 14 N 1.46931 * 108.77274 * 305.36469 * 13 12 11 15 15 C 1.34781 * 120.62766 * 233.60345 * 14 13 12 16 16 O 1.21281 * 119.99997 * 179.97438 * 15 14 13 17 17 C 1.50699 * 119.99906 * 0.02562 * 15 14 13 18 18 C 1.53002 * 109.46948 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.46910 * 179.97438 * 18 17 15 20 20 F 1.39904 * 109.47245 * 60.00374 * 19 18 17 21 21 F 1.39904 * 109.46997 * 179.97438 * 19 18 17 22 22 F 1.39892 * 109.47212 * 299.99876 * 19 18 17 23 23 C 1.46925 * 118.74018 * 53.60848 * 14 13 12 24 24 H 0.96999 * 119.99883 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46238 * 298.67203 * 11 9 7 26 26 H 1.08995 * 109.46216 * 58.65053 * 11 9 7 27 27 H 1.09006 * 109.49335 * 181.31393 * 12 11 9 28 28 H 1.08993 * 109.49810 * 301.41219 * 12 11 9 29 29 H 1.09002 * 109.58909 * 65.14881 * 13 12 11 30 30 H 1.08996 * 109.59133 * 185.57767 * 13 12 11 31 31 H 1.08997 * 109.47359 * 299.99315 * 17 15 14 32 32 H 1.09000 * 109.47383 * 59.99653 * 17 15 14 33 33 H 1.09005 * 109.47047 * 299.99779 * 18 17 15 34 34 H 1.09000 * 109.46969 * 59.99881 * 18 17 15 35 35 H 1.09005 * 109.58300 * 186.60199 * 23 14 13 36 36 H 1.08998 * 109.58651 * 66.18140 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6238 -2.5572 -0.8901 11 6 0.3727 -2.5818 1.2500 12 6 -0.4183 -3.8919 1.2341 13 6 0.5571 -5.0730 1.2495 14 7 1.4989 -4.9231 0.1317 15 6 1.6746 -5.9213 -0.7567 16 8 2.4546 -5.7851 -1.6754 17 6 0.9010 -7.2061 -0.6092 18 6 1.2834 -8.1643 -1.7391 19 6 0.4984 -9.4690 -1.5889 20 9 -0.8727 -9.1981 -1.6512 21 9 0.8477 -10.3449 -2.6224 22 9 0.8022 -10.0567 -0.3563 23 6 2.2455 -3.6644 0.0009 24 1 -0.4850 0.8400 0.0004 25 1 1.0025 -2.5487 2.1390 26 1 -0.3196 -1.7401 1.2638 27 1 -1.0611 -3.9395 2.1132 28 1 -1.0297 -3.9368 0.3329 29 1 1.1061 -5.0813 2.1912 30 1 0.0038 -6.0055 1.1385 31 1 1.1369 -7.6641 0.3514 32 1 -0.1672 -6.9948 -0.6583 33 1 1.0471 -7.7061 -2.6995 34 1 2.3516 -8.3756 -1.6903 35 1 2.8061 -3.6676 -0.9340 36 1 2.9321 -3.5579 0.8407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397746022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:53 Heat of formation + Delta-G solvation = -211.652645 kcal Electronic energy + Delta-G solvation = -22305.487711 eV Core-core repulsion = 18373.690109 eV Total energy + Delta-G solvation = -3931.797602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.25999 -47.75795 -47.73386 -39.80458 -36.97866 -33.93241 -33.43594 -31.41588 -30.32441 -27.38507 -25.12230 -24.43479 -22.58403 -21.73136 -19.94739 -18.79274 -18.71785 -18.09791 -17.74573 -16.55828 -16.03445 -15.72154 -15.30980 -14.70170 -14.60713 -14.50796 -14.17243 -13.90617 -13.89391 -13.67480 -13.57734 -13.30517 -12.83430 -12.79081 -12.35175 -12.13841 -12.02304 -11.84431 -11.51090 -11.01851 -10.89619 -10.76134 -10.37421 -10.00666 -9.88515 -9.58264 -9.40236 -8.88223 -8.43425 -7.99988 -6.06148 -4.13457 2.57528 2.87826 3.27543 3.29981 3.34563 3.38457 3.71889 3.90045 3.91691 4.39324 4.60681 4.80127 4.82406 5.16259 5.24154 5.34360 5.48095 5.56984 5.63209 5.71900 6.03929 6.26992 6.32222 6.41391 6.59361 6.72929 6.87277 7.10045 7.26917 7.64350 7.83219 7.91510 8.02416 8.31400 8.48795 8.90075 9.51825 10.99420 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.037789 B = 0.003674 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.778849 B = 7619.722768 C = 7894.540996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.136 4.136 13 C 0.107 3.893 14 N -0.600 5.600 15 C 0.513 3.487 16 O -0.551 6.551 17 C -0.146 4.146 18 C -0.149 4.149 19 C 0.452 3.548 20 F -0.184 7.184 21 F -0.185 7.185 22 F -0.185 7.185 23 C 0.116 3.884 24 H 0.261 0.739 25 H 0.036 0.964 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 -16.431 1.423 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.174 4.174 13 C -0.016 4.016 14 N -0.332 5.332 15 C 0.300 3.700 16 O -0.431 6.431 17 C -0.186 4.186 18 C -0.188 4.188 19 C 0.398 3.602 20 F -0.165 7.165 21 F -0.166 7.166 22 F -0.167 7.167 23 C -0.004 4.004 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.098 0.902 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.180 -16.248 0.961 16.319 hybrid contribution 0.154 0.709 0.152 0.741 sum -1.026 -15.539 1.113 15.612 Atomic orbital electron populations 1.69868 1.05914 1.26542 1.50423 1.24934 0.94857 0.99113 0.94866 0.86571 0.79845 0.83276 0.78183 1.20641 1.21234 1.19866 1.21070 0.93004 0.90255 1.51075 0.92457 1.18976 0.92952 0.91166 0.94834 0.95253 1.21640 0.99480 0.95407 0.98588 1.22011 0.97642 0.96610 1.01115 1.21804 0.91409 0.99187 0.89241 1.48303 1.41970 1.16022 1.26857 1.20109 0.82927 0.84726 0.82205 1.90686 1.38092 1.81668 1.32606 1.21655 1.02709 0.94545 0.99707 1.22617 1.02399 0.90315 1.03466 1.20662 0.78553 0.87480 0.73493 1.93190 1.33503 1.93803 1.96044 1.93188 1.91871 1.72282 1.59275 1.93176 1.92918 1.86279 1.44297 1.22040 0.95100 0.81704 1.01603 0.92935 0.94521 0.88580 0.92322 0.92301 0.91658 0.91047 0.87918 0.87717 0.86394 0.86516 0.90191 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 11.32 55.43 0.63 -23.89 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.67 8.56 -34.44 -0.29 -13.96 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.44 4.96 -26.69 -0.13 -2.58 16 12 C -0.14 -2.28 6.08 -26.61 -0.16 -2.44 16 13 C 0.11 1.52 6.34 -3.71 -0.02 1.50 16 14 N -0.60 -10.35 2.97 -172.77 -0.51 -10.87 16 15 C 0.51 8.35 7.70 -10.98 -0.08 8.27 16 16 O -0.55 -10.83 15.39 5.56 0.09 -10.74 16 17 C -0.15 -1.64 3.80 -27.88 -0.11 -1.75 16 18 C -0.15 -1.54 4.55 -26.73 -0.12 -1.66 16 19 C 0.45 4.57 3.16 37.16 0.12 4.69 16 20 F -0.18 -1.98 16.80 2.25 0.04 -1.95 16 21 F -0.18 -1.99 17.32 2.25 0.04 -1.95 16 22 F -0.19 -1.92 16.80 2.25 0.04 -1.88 16 23 C 0.12 2.41 5.66 -3.71 -0.02 2.39 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.10 2.38 6.04 -51.93 -0.31 2.06 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 31 H 0.10 0.96 7.60 -51.93 -0.39 0.56 16 32 H 0.10 1.07 7.35 -51.93 -0.38 0.69 16 33 H 0.12 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.12 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.08 1.78 7.01 -51.93 -0.36 1.42 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 304.86 15.07 4.59 4.59 Total: -1.00 -29.06 304.86 -5.92 -34.98 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.68 Total: -0.86 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.13 Total: -3.19 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.11 Total: -34.76 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.11 Total: -5.78 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.06 -5.92 -34.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397746022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.670 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds