Wall clock time and date at job start Fri Apr 10 2020 14:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99921 * 2 1 4 4 H 1.48501 * 109.47234 * 270.00567 * 3 2 1 5 5 H 1.48505 * 109.47421 * 30.00435 * 3 2 1 6 6 H 1.48494 * 109.47411 * 150.00643 * 3 2 1 7 7 C 1.37880 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99774 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.50007 * 59.99960 * 9 7 2 11 11 C 1.53039 * 109.49530 * 299.93494 * 9 7 2 12 12 C 1.53049 * 109.53353 * 178.65349 * 11 9 7 13 13 C 1.53187 * 109.31497 * 61.36666 * 12 11 9 14 14 N 1.46931 * 108.77274 * 305.36469 * 13 12 11 15 15 C 1.34781 * 120.62766 * 233.60345 * 14 13 12 16 16 O 1.21281 * 119.99997 * 179.97438 * 15 14 13 17 17 C 1.50699 * 119.99906 * 0.02562 * 15 14 13 18 18 C 1.53002 * 109.46948 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.46910 * 179.97438 * 18 17 15 20 20 F 1.39904 * 109.47245 * 60.00374 * 19 18 17 21 21 F 1.39904 * 109.46997 * 179.97438 * 19 18 17 22 22 F 1.39892 * 109.47212 * 299.99876 * 19 18 17 23 23 C 1.46925 * 118.74018 * 53.60848 * 14 13 12 24 24 H 0.96999 * 119.99883 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46238 * 298.67203 * 11 9 7 26 26 H 1.08995 * 109.46216 * 58.65053 * 11 9 7 27 27 H 1.09006 * 109.49335 * 181.31393 * 12 11 9 28 28 H 1.08993 * 109.49810 * 301.41219 * 12 11 9 29 29 H 1.09002 * 109.58909 * 65.14881 * 13 12 11 30 30 H 1.08996 * 109.59133 * 185.57767 * 13 12 11 31 31 H 1.08997 * 109.47359 * 299.99315 * 17 15 14 32 32 H 1.09000 * 109.47383 * 59.99653 * 17 15 14 33 33 H 1.09005 * 109.47047 * 299.99779 * 18 17 15 34 34 H 1.09000 * 109.46969 * 59.99881 * 18 17 15 35 35 H 1.09005 * 109.58300 * 186.60199 * 23 14 13 36 36 H 1.08998 * 109.58651 * 66.18140 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6238 -2.5572 -0.8901 11 6 0.3727 -2.5818 1.2500 12 6 -0.4183 -3.8919 1.2341 13 6 0.5571 -5.0730 1.2495 14 7 1.4989 -4.9231 0.1317 15 6 1.6746 -5.9213 -0.7567 16 8 2.4546 -5.7851 -1.6754 17 6 0.9010 -7.2061 -0.6092 18 6 1.2834 -8.1643 -1.7391 19 6 0.4984 -9.4690 -1.5889 20 9 -0.8727 -9.1981 -1.6512 21 9 0.8477 -10.3449 -2.6224 22 9 0.8022 -10.0567 -0.3563 23 6 2.2455 -3.6644 0.0009 24 1 -0.4850 0.8400 0.0004 25 1 1.0025 -2.5487 2.1390 26 1 -0.3196 -1.7401 1.2638 27 1 -1.0611 -3.9395 2.1132 28 1 -1.0297 -3.9368 0.3329 29 1 1.1061 -5.0813 2.1912 30 1 0.0038 -6.0055 1.1385 31 1 1.1369 -7.6641 0.3514 32 1 -0.1672 -6.9948 -0.6583 33 1 1.0471 -7.7061 -2.6995 34 1 2.3516 -8.3756 -1.6903 35 1 2.8061 -3.6676 -0.9340 36 1 2.9321 -3.5579 0.8407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397746022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:52 Heat of formation + Delta-G solvation = -228.156639 kcal Electronic energy + Delta-G solvation = -22306.203378 eV Core-core repulsion = 18373.690109 eV Total energy + Delta-G solvation = -3932.513269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.06702 -48.57173 -48.53570 -41.15213 -38.48039 -35.41068 -34.74090 -33.02829 -31.96454 -28.50464 -26.91378 -25.80585 -23.63020 -23.21900 -21.45316 -19.95781 -19.51975 -19.24312 -18.75617 -18.29780 -17.35398 -16.86751 -16.68711 -16.43433 -15.53794 -15.44563 -15.09858 -14.99075 -14.90522 -14.81105 -14.68928 -14.68307 -14.40488 -14.21779 -13.63374 -13.57256 -13.28630 -12.88131 -12.77405 -12.64293 -12.53964 -12.37657 -11.90731 -11.83208 -11.59713 -11.27075 -10.89742 -10.70577 -10.42702 -9.49308 -8.10778 -6.25802 1.41061 1.42473 1.51972 1.61679 1.71759 2.13574 2.43797 2.85550 3.03083 3.12447 3.16133 3.59595 3.86287 3.98816 4.12904 4.27422 4.38204 4.42495 4.56314 4.65077 4.67168 4.81908 4.84243 4.89691 5.00114 5.13460 5.29498 5.48697 5.57205 5.61906 5.94168 6.14597 6.35029 6.55157 6.84126 7.18042 7.42579 8.92780 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.037789 B = 0.003674 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.778849 B = 7619.722768 C = 7894.540996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.954 3.046 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.040 3.960 10 H -0.013 1.013 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.107 3.893 14 N -0.607 5.607 15 C 0.508 3.492 16 O -0.592 6.592 17 C -0.136 4.136 18 C -0.147 4.147 19 C 0.462 3.538 20 F -0.186 7.186 21 F -0.189 7.189 22 F -0.183 7.183 23 C 0.129 3.871 24 H 0.261 0.739 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.054 0.946 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 -18.038 2.720 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.779 3.221 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.577 4.577 8 H 0.071 0.929 9 C 0.021 3.979 10 H 0.005 0.995 11 C -0.146 4.146 12 C -0.167 4.167 13 C -0.014 4.014 14 N -0.338 5.338 15 C 0.298 3.702 16 O -0.474 6.474 17 C -0.175 4.175 18 C -0.185 4.185 19 C 0.408 3.592 20 F -0.168 7.168 21 F -0.170 7.170 22 F -0.165 7.165 23 C 0.007 3.993 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.073 0.927 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.486 -17.879 2.274 18.085 hybrid contribution 0.243 1.212 -0.289 1.270 sum -1.243 -16.667 1.986 16.831 Atomic orbital electron populations 1.70005 1.07080 1.27183 1.50949 1.25670 0.95666 1.02222 0.94595 0.85624 0.78891 0.79475 0.78077 1.20612 1.20628 1.19142 1.21462 0.93102 0.91981 1.51172 0.92950 1.18883 0.93207 0.91667 0.94157 0.99518 1.21435 0.98787 0.97196 0.97139 1.21922 0.97879 0.94948 1.01960 1.22045 0.90682 0.99805 0.88895 1.48363 1.42329 1.14902 1.28193 1.20986 0.82489 0.85839 0.80910 1.90669 1.39969 1.82615 1.34130 1.21668 1.02668 0.91691 1.01500 1.22560 1.02685 0.90247 1.03018 1.20472 0.78242 0.87106 0.73377 1.93191 1.33718 1.93798 1.96054 1.93184 1.91906 1.72382 1.59550 1.93184 1.92889 1.86258 1.44138 1.21551 0.94456 0.82778 1.00523 0.92965 0.94415 0.92119 0.89252 0.93569 0.89764 0.86483 0.84860 0.85880 0.86947 0.86242 0.92712 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.74 11.32 21.45 0.24 -51.50 16 2 C 0.02 0.96 5.30 84.66 0.45 1.41 16 3 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -29.45 8.56 25.60 0.22 -29.23 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.04 1.97 2.25 -11.46 -0.03 1.95 16 10 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 11 C -0.11 -4.67 4.96 30.62 0.15 -4.52 16 12 C -0.13 -4.08 6.08 30.67 0.19 -3.89 16 13 C 0.11 2.68 6.34 86.36 0.55 3.23 16 14 N -0.61 -20.06 2.97 -818.90 -2.43 -22.50 16 15 C 0.51 15.73 7.70 87.66 0.67 16.41 16 16 O -0.59 -23.26 15.39 -3.03 -0.05 -23.30 16 17 C -0.14 -2.58 3.80 29.85 0.11 -2.47 16 18 C -0.15 -2.68 4.55 30.60 0.14 -2.54 16 19 C 0.46 8.09 3.16 71.98 0.23 8.32 16 20 F -0.19 -3.49 16.80 44.97 0.76 -2.73 16 21 F -0.19 -3.69 17.32 44.97 0.78 -2.91 16 22 F -0.18 -3.19 16.80 44.97 0.76 -2.44 16 23 C 0.13 5.46 5.66 86.36 0.49 5.94 16 24 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 3.08 6.04 -2.39 -0.01 3.06 16 27 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.12 1.92 5.93 -2.39 -0.01 1.91 16 31 H 0.13 1.80 7.60 -2.39 -0.02 1.78 16 32 H 0.12 1.98 7.35 -2.39 -0.02 1.96 16 33 H 0.11 2.22 8.10 -2.38 -0.02 2.20 16 34 H 0.12 2.16 8.10 -2.39 -0.02 2.14 16 35 H 0.05 2.55 7.01 -2.38 -0.02 2.53 16 36 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -65.79 304.86 6.34 -59.45 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.09 Total: 6.11 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 3.17 Total: -5.40 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -2.19 Total: -74.00 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 9 Polarization: -10.36 SS G_CDS: 2.29 Total: -8.07 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -65.79 6.34 -59.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397746022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.704 kcal (2) G-P(sol) polarization free energy of solvation -65.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds