Wall clock time and date at job start Fri Apr 10 2020 14:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99969 * 2 1 4 4 H 1.48500 * 109.47394 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47296 * 300.00280 * 3 2 1 6 6 H 1.48505 * 109.46790 * 59.99786 * 3 2 1 7 7 C 1.37875 * 120.00691 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00642 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99596 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53208 * 299.90112 * 9 7 2 11 11 C 1.53117 * 109.50579 * 179.80770 * 9 7 2 12 12 C 1.53110 * 109.16370 * 182.40337 * 11 9 7 13 13 C 1.53039 * 109.27968 * 57.64917 * 12 11 9 14 14 N 1.46842 * 109.52168 * 300.82120 * 13 12 11 15 15 C 1.38322 * 110.99901 * 185.83597 * 14 13 12 16 16 N 1.31636 * 127.50054 * 55.81396 * 15 14 13 17 17 C 1.31288 * 116.79289 * 179.97438 * 16 15 14 18 18 C 1.50703 * 121.06452 * 180.02562 * 17 16 15 19 19 C 1.52995 * 117.49860 * 188.74842 * 18 17 16 20 20 C 1.53000 * 117.49550 * 120.09135 * 18 17 16 21 21 N 1.30133 * 117.87281 * 0.02562 * 17 16 15 22 22 S 1.69948 * 105.76450 * 359.97438 * 21 17 16 23 23 C 1.46848 * 111.19703 * 61.74295 * 14 13 12 24 24 H 0.96999 * 120.00160 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.51835 * 302.30936 * 11 9 7 26 26 H 1.08997 * 109.52637 * 62.49065 * 11 9 7 27 27 H 1.09002 * 109.50890 * 177.59502 * 12 11 9 28 28 H 1.09001 * 109.50538 * 297.67187 * 12 11 9 29 29 H 1.09004 * 109.46230 * 180.80567 * 13 12 11 30 30 H 1.09000 * 109.46162 * 60.83794 * 13 12 11 31 31 H 1.09001 * 115.54541 * 334.42317 * 18 17 16 32 32 H 1.09003 * 117.50401 * 0.02562 * 19 18 17 33 33 H 1.08999 * 117.49650 * 145.02541 * 19 18 17 34 34 H 1.09005 * 117.49561 * 214.98459 * 20 18 17 35 35 H 1.08998 * 117.50018 * 359.97438 * 20 18 17 36 36 H 1.09003 * 109.46004 * 58.27239 * 23 14 13 37 37 H 1.09004 * 109.45940 * 178.23564 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6251 -2.5593 0.8885 11 6 2.2455 -3.6635 -0.0069 12 6 1.4730 -4.9839 -0.0687 13 6 0.5869 -4.9930 -1.3165 14 7 -0.3469 -3.8609 -1.2634 15 6 -1.2492 -3.9131 -2.3105 16 7 -2.0580 -4.9036 -2.6228 17 6 -2.8330 -4.7278 -3.6678 18 6 -3.7962 -5.7990 -4.1106 19 6 -4.5099 -5.5979 -5.4489 20 6 -5.2841 -5.4437 -4.1375 21 7 -2.7430 -3.5990 -4.3090 22 16 -1.5594 -2.6957 -3.4897 23 6 0.3716 -2.5802 -1.2513 24 1 -0.4850 0.8400 0.0004 25 1 2.8975 -3.5818 -0.8768 26 1 2.8452 -3.6345 0.9028 27 1 2.1763 -5.8153 -0.1158 28 1 0.8509 -5.0836 0.8207 29 1 0.0246 -5.9260 -1.3558 30 1 1.2111 -4.9075 -2.2059 31 1 -3.5269 -6.8177 -3.8318 32 1 -4.2825 -4.6910 -6.0093 33 1 -4.7105 -6.4844 -6.0504 34 1 -5.9938 -6.2290 -3.8767 35 1 -5.5664 -4.4355 -3.8345 36 1 0.9968 -2.5061 -2.1410 37 1 -0.3472 -1.7607 -1.2434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:42 Heat of formation + Delta-G solvation = 75.667512 kcal Electronic energy + Delta-G solvation = -19517.888195 eV Core-core repulsion = 16615.452092 eV Total energy + Delta-G solvation = -2902.436103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18136 -38.68763 -36.56430 -33.97189 -32.61261 -30.66917 -29.87552 -26.19176 -25.26937 -23.80937 -22.43783 -22.26783 -21.00130 -19.27321 -19.06919 -18.25535 -16.83427 -15.94600 -15.74432 -15.18875 -14.64361 -14.35542 -14.27305 -13.85582 -13.32329 -12.94345 -12.65064 -12.48998 -12.18461 -11.60959 -11.46454 -11.27117 -11.09007 -10.98918 -10.79087 -10.63414 -10.54248 -10.42127 -10.36467 -10.26768 -9.80467 -9.42462 -9.19828 -9.15272 -8.87147 -8.52331 -7.90223 -6.17710 -4.25824 0.89254 1.51722 2.12021 2.78416 3.21452 3.31134 3.33756 3.49087 3.90789 4.30555 4.44634 4.79982 4.93054 5.13947 5.15872 5.30883 5.35590 5.49667 5.56505 5.65218 5.81296 5.87671 5.96949 6.08071 6.13602 6.16226 6.23391 6.32484 6.37376 6.65295 6.69956 6.79097 7.02670 7.31538 7.42668 7.66789 7.85287 8.04538 8.21979 8.79753 9.41703 10.88664 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023742 B = 0.005040 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.061773 B = 5553.797579 C = 6448.492597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.056 3.944 10 H 0.041 0.959 11 C -0.116 4.116 12 C -0.118 4.118 13 C 0.069 3.931 14 N -0.426 5.426 15 C 0.291 3.709 16 N -0.555 5.555 17 C 0.313 3.687 18 C -0.076 4.076 19 C -0.158 4.158 20 C -0.157 4.157 21 N -0.510 5.510 22 S 0.195 5.805 23 C 0.045 3.955 24 H 0.265 0.735 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 -10.184 -6.496 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.037 3.963 10 H 0.059 0.941 11 C -0.154 4.154 12 C -0.156 4.156 13 C -0.058 4.058 14 N -0.145 5.145 15 C -0.086 4.086 16 N -0.285 5.285 17 C 0.023 3.977 18 C -0.100 4.100 19 C -0.196 4.196 20 C -0.196 4.196 21 N -0.343 5.343 22 S 0.334 5.666 23 C -0.080 4.080 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.056 0.944 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.495 -9.162 -6.836 12.283 hybrid contribution 0.652 0.257 0.049 0.703 sum -3.843 -8.904 -6.787 11.837 Atomic orbital electron populations 1.69812 1.05942 1.27023 1.49779 1.25032 0.94906 0.99443 0.94513 0.86497 0.80132 0.83431 0.77796 1.19654 1.20831 1.20844 1.21155 0.93183 0.89882 1.51444 0.91929 1.18702 0.92047 0.92633 0.92888 0.94086 1.21755 0.98568 0.94087 1.01007 1.21695 0.97862 0.98991 0.97074 1.22239 0.92810 0.91837 0.98943 1.58188 1.17133 1.08562 1.30575 1.27279 0.96307 0.93148 0.91879 1.67266 1.11179 1.30529 1.19519 1.22194 0.94715 0.92437 0.88325 1.20310 0.91080 0.95930 1.02640 1.23036 1.02342 1.04087 0.90165 1.23020 0.92083 1.03376 1.01133 1.77257 1.21453 1.08493 1.27107 1.85377 1.35618 1.27949 1.17669 1.23205 0.98499 0.85281 1.01044 0.92517 0.93107 0.92310 0.91761 0.91154 0.89906 0.93624 0.85344 0.87570 0.88132 0.87914 0.88476 0.94370 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.91 11.33 55.43 0.63 -23.29 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.16 29.54 -169.99 -5.02 15.13 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.14 8.56 -34.44 -0.29 -13.43 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.06 1.30 2.26 -91.70 -0.21 1.09 16 10 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 11 C -0.12 -2.18 5.22 -26.61 -0.14 -2.32 16 12 C -0.12 -1.89 6.09 -26.65 -0.16 -2.05 16 13 C 0.07 1.17 5.39 -3.84 -0.02 1.15 16 14 N -0.43 -8.54 4.71 -174.57 -0.82 -9.36 16 15 C 0.29 5.78 7.02 -86.35 -0.61 5.17 16 16 N -0.55 -10.55 10.37 -14.57 -0.15 -10.71 16 17 C 0.31 5.47 7.22 -159.03 -1.15 4.32 16 18 C -0.08 -1.01 6.28 -91.77 -0.58 -1.59 16 19 C -0.16 -1.73 10.05 -26.70 -0.27 -2.00 16 20 C -0.16 -1.75 10.24 -26.70 -0.27 -2.02 16 21 N -0.51 -9.37 11.31 29.54 0.33 -9.04 16 22 S 0.20 3.76 22.16 -107.50 -2.38 1.38 16 23 C 0.04 0.99 3.63 -3.84 -0.01 0.98 16 24 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.32 7.92 -51.93 -0.41 0.91 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.13 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.11 1.31 7.65 -51.93 -0.40 0.91 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.12 3.04 5.54 -51.93 -0.29 2.75 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -27.45 314.72 -11.76 -39.22 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.29 Total: 1.07 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -3.81 Total: -9.15 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.01 Total: -52.39 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.38 Total: 1.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.45 -11.76 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.886 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds