Wall clock time and date at job start Fri Apr 10 2020 14:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99969 * 2 1 4 4 H 1.48500 * 109.47394 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47296 * 300.00280 * 3 2 1 6 6 H 1.48505 * 109.46790 * 59.99786 * 3 2 1 7 7 C 1.37875 * 120.00691 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00642 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99596 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53208 * 299.90112 * 9 7 2 11 11 C 1.53117 * 109.50579 * 179.80770 * 9 7 2 12 12 C 1.53110 * 109.16370 * 182.40337 * 11 9 7 13 13 C 1.53039 * 109.27968 * 57.64917 * 12 11 9 14 14 N 1.46842 * 109.52168 * 300.82120 * 13 12 11 15 15 C 1.38322 * 110.99901 * 185.83597 * 14 13 12 16 16 N 1.31636 * 127.50054 * 55.81396 * 15 14 13 17 17 C 1.31288 * 116.79289 * 179.97438 * 16 15 14 18 18 C 1.50703 * 121.06452 * 180.02562 * 17 16 15 19 19 C 1.52995 * 117.49860 * 188.74842 * 18 17 16 20 20 C 1.53000 * 117.49550 * 120.09135 * 18 17 16 21 21 N 1.30133 * 117.87281 * 0.02562 * 17 16 15 22 22 S 1.69948 * 105.76450 * 359.97438 * 21 17 16 23 23 C 1.46848 * 111.19703 * 61.74295 * 14 13 12 24 24 H 0.96999 * 120.00160 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.51835 * 302.30936 * 11 9 7 26 26 H 1.08997 * 109.52637 * 62.49065 * 11 9 7 27 27 H 1.09002 * 109.50890 * 177.59502 * 12 11 9 28 28 H 1.09001 * 109.50538 * 297.67187 * 12 11 9 29 29 H 1.09004 * 109.46230 * 180.80567 * 13 12 11 30 30 H 1.09000 * 109.46162 * 60.83794 * 13 12 11 31 31 H 1.09001 * 115.54541 * 334.42317 * 18 17 16 32 32 H 1.09003 * 117.50401 * 0.02562 * 19 18 17 33 33 H 1.08999 * 117.49650 * 145.02541 * 19 18 17 34 34 H 1.09005 * 117.49561 * 214.98459 * 20 18 17 35 35 H 1.08998 * 117.50018 * 359.97438 * 20 18 17 36 36 H 1.09003 * 109.46004 * 58.27239 * 23 14 13 37 37 H 1.09004 * 109.45940 * 178.23564 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6251 -2.5593 0.8885 11 6 2.2455 -3.6635 -0.0069 12 6 1.4730 -4.9839 -0.0687 13 6 0.5869 -4.9930 -1.3165 14 7 -0.3469 -3.8609 -1.2634 15 6 -1.2492 -3.9131 -2.3105 16 7 -2.0580 -4.9036 -2.6228 17 6 -2.8330 -4.7278 -3.6678 18 6 -3.7962 -5.7990 -4.1106 19 6 -4.5099 -5.5979 -5.4489 20 6 -5.2841 -5.4437 -4.1375 21 7 -2.7430 -3.5990 -4.3090 22 16 -1.5594 -2.6957 -3.4897 23 6 0.3716 -2.5802 -1.2513 24 1 -0.4850 0.8400 0.0004 25 1 2.8975 -3.5818 -0.8768 26 1 2.8452 -3.6345 0.9028 27 1 2.1763 -5.8153 -0.1158 28 1 0.8509 -5.0836 0.8207 29 1 0.0246 -5.9260 -1.3558 30 1 1.2111 -4.9075 -2.2059 31 1 -3.5269 -6.8177 -3.8318 32 1 -4.2825 -4.6910 -6.0093 33 1 -4.7105 -6.4844 -6.0504 34 1 -5.9938 -6.2290 -3.8767 35 1 -5.5664 -4.4355 -3.8345 36 1 0.9968 -2.5061 -2.1410 37 1 -0.3472 -1.7607 -1.2434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:42 Heat of formation + Delta-G solvation = 61.149358 kcal Electronic energy + Delta-G solvation = -19518.517750 eV Core-core repulsion = 16615.452092 eV Total energy + Delta-G solvation = -2903.065657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.60354 -40.17991 -37.64669 -35.67911 -34.26487 -32.13651 -31.58282 -27.58174 -27.09223 -25.24533 -23.84489 -23.29875 -22.39806 -20.79347 -20.40274 -19.79266 -18.58108 -17.65156 -16.87201 -16.61892 -16.46476 -15.76129 -15.46408 -15.37345 -14.82124 -14.52871 -14.31422 -13.82185 -13.65565 -12.92530 -12.90148 -12.76651 -12.57421 -12.43160 -12.30782 -12.23622 -12.01799 -11.86394 -11.59042 -11.45206 -11.39863 -11.06511 -10.94423 -10.77033 -10.53101 -10.29211 -9.43546 -8.14870 -6.29450 -0.58866 0.00589 0.68419 1.41265 1.42722 1.45547 1.55286 2.01816 2.42663 2.91433 3.12143 3.22597 3.83595 3.90081 4.00034 4.02390 4.06789 4.20758 4.34606 4.40088 4.56971 4.67035 4.69757 4.75439 4.83482 4.90869 4.97197 5.09202 5.13589 5.16129 5.22567 5.25806 5.49869 5.56994 5.76453 5.82932 5.95366 6.29049 6.58682 6.82943 7.41351 8.90131 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023742 B = 0.005040 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.061773 B = 5553.797579 C = 6448.492597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.052 3.948 10 H 0.006 0.994 11 C -0.111 4.111 12 C -0.109 4.109 13 C 0.067 3.933 14 N -0.436 5.436 15 C 0.285 3.715 16 N -0.558 5.558 17 C 0.310 3.690 18 C -0.100 4.100 19 C -0.142 4.142 20 C -0.147 4.147 21 N -0.515 5.515 22 S 0.166 5.834 23 C 0.063 3.937 24 H 0.263 0.737 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 -12.109 -7.185 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.570 4.570 8 H 0.082 0.918 9 C 0.033 3.967 10 H 0.025 0.975 11 C -0.148 4.148 12 C -0.146 4.146 13 C -0.060 4.060 14 N -0.155 5.155 15 C -0.093 4.093 16 N -0.289 5.289 17 C 0.021 3.979 18 C -0.124 4.124 19 C -0.180 4.180 20 C -0.185 4.185 21 N -0.347 5.347 22 S 0.304 5.696 23 C -0.063 4.063 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.165 0.835 32 H 0.107 0.893 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.384 -11.104 -7.530 14.115 hybrid contribution 0.553 0.804 0.255 1.009 sum -3.830 -10.301 -7.275 13.180 Atomic orbital electron populations 1.69955 1.07220 1.27461 1.50805 1.25743 0.95548 1.02470 0.94402 0.85592 0.79362 0.79805 0.77477 1.18733 1.20836 1.20890 1.21518 0.93448 0.91154 1.50874 0.91816 1.18660 0.92562 0.93809 0.91702 0.97548 1.21656 0.97812 0.93857 1.01520 1.21664 0.98001 0.98638 0.96324 1.22419 0.92673 0.91051 0.99811 1.58178 1.17731 1.08578 1.30997 1.27359 0.96527 0.93455 0.91981 1.67351 1.11291 1.30180 1.20029 1.23008 0.94520 0.92968 0.87399 1.20624 0.91383 0.95365 1.04995 1.23124 1.00553 1.04718 0.89590 1.23129 0.91046 1.03434 1.00939 1.77352 1.21276 1.08876 1.27192 1.85423 1.36759 1.28905 1.18501 1.22756 0.97524 0.85718 1.00346 0.92778 0.92541 0.91780 0.87717 0.91661 0.88561 0.92810 0.83488 0.89340 0.84719 0.84702 0.90315 0.94709 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.89 11.33 21.45 0.24 -50.65 16 2 C 0.02 0.94 5.30 84.65 0.45 1.39 16 3 Si 0.95 41.76 29.54 68.60 2.03 43.79 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.53 -27.29 8.56 25.60 0.22 -27.07 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.05 2.43 2.26 -11.49 -0.03 2.40 16 10 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 11 C -0.11 -4.03 5.22 30.67 0.16 -3.87 16 12 C -0.11 -3.23 6.09 30.64 0.19 -3.04 16 13 C 0.07 2.15 5.39 86.33 0.46 2.62 16 14 N -0.44 -17.55 4.71 -706.22 -3.33 -20.88 16 15 C 0.28 11.36 7.02 178.86 1.26 12.62 16 16 N -0.56 -20.90 10.37 -200.02 -2.08 -22.97 16 17 C 0.31 10.60 7.22 139.39 1.01 11.60 16 18 C -0.10 -2.44 6.28 -11.54 -0.07 -2.51 16 19 C -0.14 -2.71 10.05 30.62 0.31 -2.41 16 20 C -0.15 -2.89 10.24 30.62 0.31 -2.58 16 21 N -0.51 -18.94 11.31 -60.44 -0.68 -19.62 16 22 S 0.17 6.57 22.16 -56.49 -1.25 5.32 16 23 C 0.06 2.85 3.63 86.32 0.31 3.16 16 24 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 25 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 29 H 0.10 2.87 7.92 -2.38 -0.02 2.85 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.15 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.09 2.05 7.65 -2.39 -0.02 2.03 16 33 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.03 1.57 8.10 -2.39 -0.02 1.55 16 37 H 0.09 4.78 5.54 -2.38 -0.01 4.77 16 Total: -1.00 -60.53 314.72 0.57 -59.96 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.06 Total: 12.74 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 4.58 Total: -7.69 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -5.84 Total: -114.12 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 6.57 SS G_CDS: -1.25 Total: 5.32 kcal Total: -60.53 0.57 -59.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.113 kcal (2) G-P(sol) polarization free energy of solvation -60.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds