Wall clock time and date at job start Fri Apr 10 2020 14:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99582 * 2 1 4 4 H 1.48496 * 109.47240 * 270.00078 * 3 2 1 5 5 H 1.48500 * 109.47039 * 30.00596 * 3 2 1 6 6 H 1.48501 * 109.46661 * 149.99927 * 3 2 1 7 7 C 1.38808 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99815 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00045 * 180.02562 * 7 2 1 10 10 C 1.46508 * 120.00057 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.77590 * 328.23979 * 10 9 7 12 12 C 1.55151 * 110.71893 * 204.99943 * 10 9 7 13 13 C 1.54917 * 101.58025 * 206.13557 * 12 10 9 14 14 N 1.47421 * 104.83002 * 37.01304 * 13 12 10 15 15 C 1.34778 * 125.64805 * 155.84496 * 14 13 12 16 16 O 1.21535 * 119.99910 * 180.02562 * 15 14 13 17 17 C 1.48046 * 120.00096 * 0.02562 * 15 14 13 18 18 C 1.39382 * 119.69644 * 180.02562 * 17 15 14 19 19 C 1.38457 * 119.09769 * 180.02562 * 18 17 15 20 20 C 1.38906 * 118.46675 * 359.97438 * 19 18 17 21 21 F 1.35105 * 120.34854 * 179.97438 * 20 19 18 22 22 C 1.38876 * 119.30098 * 0.02562 * 20 19 18 23 23 N 1.31456 * 120.85230 * 359.72328 * 22 20 19 24 24 C 1.47021 * 108.70450 * 335.86832 * 14 13 12 25 25 H 0.96995 * 120.00289 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00077 * 359.97438 * 9 7 2 27 27 H 1.08998 * 111.00631 * 88.06394 * 12 10 9 28 28 H 1.09004 * 111.00792 * 324.20792 * 12 10 9 29 29 H 1.09002 * 110.36419 * 155.85111 * 13 12 10 30 30 H 1.08994 * 110.36559 * 278.05860 * 13 12 10 31 31 H 1.08004 * 120.45012 * 359.97258 * 18 17 15 32 32 H 1.08000 * 120.76622 * 180.02562 * 19 18 17 33 33 H 1.07996 * 119.56818 * 180.02562 * 22 20 19 34 34 H 1.08996 * 109.88310 * 120.48076 * 24 14 13 35 35 H 1.09002 * 109.88672 * 241.49116 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5549 -3.2390 0.5360 12 6 5.5254 -2.2886 0.6139 13 6 6.3126 -3.4327 -0.0728 14 7 5.7751 -3.4903 -1.4443 15 6 6.4209 -3.9800 -2.5211 16 8 5.8782 -3.9768 -3.6086 17 6 7.7913 -4.5220 -2.3793 18 6 8.4535 -5.0263 -3.4972 19 6 9.7346 -5.5306 -3.3503 20 6 10.3122 -5.5130 -2.0872 21 9 11.5602 -5.9959 -1.9005 22 6 9.5931 -4.9949 -1.0181 23 7 8.3799 -4.5185 -1.1894 24 6 4.4180 -2.9246 -1.4430 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3620 0.0004 27 1 5.5023 -2.4245 1.6951 28 1 5.9425 -1.3159 0.3527 29 1 7.3777 -3.2018 -0.0921 30 1 6.1390 -4.3762 0.4446 31 1 7.9735 -5.0246 -4.4647 32 1 10.2726 -5.9277 -4.1984 33 1 10.0382 -4.9787 -0.0343 34 1 4.3720 -2.0701 -2.1180 35 1 3.7000 -3.6828 -1.7556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968472850.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:35 Heat of formation + Delta-G solvation = -9.673826 kcal Electronic energy + Delta-G solvation = -20961.588951 eV Core-core repulsion = 17489.238994 eV Total energy + Delta-G solvation = -3472.349957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.47592 -40.89600 -39.18395 -37.37414 -34.34311 -33.03467 -31.86062 -31.23899 -29.84934 -27.89686 -25.21205 -24.31653 -23.35621 -22.31056 -20.60827 -19.76979 -18.13457 -17.97343 -17.73187 -17.07201 -16.37920 -16.07955 -15.76888 -15.01744 -14.74122 -14.28317 -14.23612 -13.98289 -13.74409 -13.47347 -13.20898 -12.98228 -12.67028 -12.38699 -12.13142 -11.82672 -11.29709 -10.90128 -10.80113 -10.62426 -10.44895 -10.26183 -10.04962 -9.69202 -9.62320 -9.43460 -9.02607 -8.39412 -7.39245 -5.82822 -3.20789 0.11965 0.61085 2.50731 2.95667 3.34534 3.37788 3.42986 3.47264 3.48773 3.79518 4.22614 4.27027 4.40478 4.54069 4.82599 4.94647 5.14880 5.21591 5.25051 5.38285 5.42406 5.55590 5.59701 5.80871 5.91121 5.96842 6.12986 6.22452 6.30006 6.45542 6.57371 6.75633 7.17773 7.63907 7.91442 8.16143 8.35887 9.12351 9.84478 10.02494 11.34907 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037631 B = 0.003545 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.884003 B = 7896.817054 C = 8169.160047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.253 4.253 8 H 0.093 0.907 9 N -0.736 5.736 10 C 0.177 3.823 11 H 0.078 0.922 12 C -0.149 4.149 13 C 0.104 3.896 14 N -0.590 5.590 15 C 0.574 3.426 16 O -0.537 6.537 17 C 0.080 3.920 18 C -0.084 4.084 19 C -0.115 4.115 20 C 0.064 3.936 21 F -0.126 7.126 22 C 0.073 3.927 23 N -0.425 5.425 24 C 0.081 3.919 25 H 0.261 0.739 26 H 0.364 0.636 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.175 0.825 34 H 0.074 0.926 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.919 -11.379 -2.126 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.383 4.383 8 H 0.111 0.889 9 N -0.378 5.378 10 C 0.065 3.935 11 H 0.095 0.905 12 C -0.188 4.188 13 C -0.019 4.019 14 N -0.321 5.321 15 C 0.361 3.639 16 O -0.414 6.414 17 C -0.058 4.058 18 C -0.104 4.104 19 C -0.141 4.141 20 C 0.042 3.958 21 F -0.105 7.105 22 C -0.088 4.088 23 N -0.135 5.135 24 C -0.044 4.044 25 H 0.071 0.929 26 H 0.198 0.802 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.192 0.808 34 H 0.092 0.908 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.903 -11.095 -2.035 24.637 hybrid contribution 1.302 0.748 -0.728 1.668 sum 23.204 -10.348 -2.763 25.557 Atomic orbital electron populations 1.69698 1.05143 1.26014 1.56772 1.24683 0.95234 0.97291 1.01514 0.86565 0.79230 0.84924 0.77896 1.20959 1.21610 1.20224 1.19099 0.80324 0.94930 1.43951 0.88934 1.42726 1.04180 1.01588 1.89259 1.21187 0.90903 0.90090 0.91305 0.90454 1.23206 0.96661 0.98398 1.00540 1.22637 0.99818 0.98609 0.80801 1.48392 1.17233 1.58078 1.08399 1.17373 0.83870 0.79015 0.83688 1.90812 1.67195 1.57720 1.25698 1.21381 0.95735 0.99187 0.89526 1.22070 0.93264 0.94257 1.00837 1.21691 0.95769 0.99861 0.96795 1.19088 0.81634 0.99333 0.95710 1.91550 1.37718 1.85366 1.95868 1.23069 0.90674 0.96027 0.99050 1.67977 1.09178 1.12469 1.23921 1.23261 0.80563 0.98441 1.02153 0.92904 0.80240 0.89799 0.90997 0.88232 0.91387 0.82276 0.82761 0.80799 0.90792 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 21.72 27.74 -169.99 -4.71 17.00 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 7 C -0.25 -6.95 10.44 -15.06 -0.16 -7.11 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.74 -16.78 4.95 -51.65 -0.26 -17.04 16 10 C 0.18 3.24 3.61 -66.09 -0.24 3.00 16 11 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 12 C -0.15 -2.13 6.71 -24.58 -0.17 -2.29 16 13 C 0.10 1.35 5.94 -2.53 -0.02 1.33 16 14 N -0.59 -9.30 3.33 -171.55 -0.57 -9.87 16 15 C 0.57 9.13 7.84 -12.24 -0.10 9.03 16 16 O -0.54 -10.09 16.65 5.33 0.09 -10.00 16 17 C 0.08 0.98 6.72 -83.02 -0.56 0.43 16 18 C -0.08 -0.82 9.63 -39.07 -0.38 -1.19 16 19 C -0.11 -0.86 10.15 -39.25 -0.40 -1.26 16 20 C 0.06 0.51 7.36 -39.10 -0.29 0.22 16 21 F -0.13 -1.00 17.28 2.25 0.04 -0.97 16 22 C 0.07 0.59 11.17 -17.48 -0.20 0.40 16 23 N -0.42 -4.57 6.58 -9.74 -0.06 -4.63 16 24 C 0.08 1.47 6.62 -3.06 -0.02 1.45 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.36 8.18 5.62 -40.82 -0.23 7.95 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 29 H 0.10 1.18 5.87 -51.93 -0.31 0.87 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.16 1.46 7.64 -52.48 -0.40 1.06 16 32 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.07 1.50 8.03 -51.93 -0.42 1.09 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 303.10 15.07 4.57 4.57 Total: -1.00 -32.59 303.10 -6.63 -39.23 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -3.89 Total: 5.58 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -2.60 Total: 4.17 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.12 Total: -59.57 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.59 -6.63 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968472850.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.552 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds