Wall clock time and date at job start Fri Apr 10 2020 14:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99582 * 2 1 4 4 H 1.48496 * 109.47240 * 270.00078 * 3 2 1 5 5 H 1.48500 * 109.47039 * 30.00596 * 3 2 1 6 6 H 1.48501 * 109.46661 * 149.99927 * 3 2 1 7 7 C 1.38808 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99815 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00045 * 180.02562 * 7 2 1 10 10 C 1.46508 * 120.00057 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.77590 * 328.23979 * 10 9 7 12 12 C 1.55151 * 110.71893 * 204.99943 * 10 9 7 13 13 C 1.54917 * 101.58025 * 206.13557 * 12 10 9 14 14 N 1.47421 * 104.83002 * 37.01304 * 13 12 10 15 15 C 1.34778 * 125.64805 * 155.84496 * 14 13 12 16 16 O 1.21535 * 119.99910 * 180.02562 * 15 14 13 17 17 C 1.48046 * 120.00096 * 0.02562 * 15 14 13 18 18 C 1.39382 * 119.69644 * 180.02562 * 17 15 14 19 19 C 1.38457 * 119.09769 * 180.02562 * 18 17 15 20 20 C 1.38906 * 118.46675 * 359.97438 * 19 18 17 21 21 F 1.35105 * 120.34854 * 179.97438 * 20 19 18 22 22 C 1.38876 * 119.30098 * 0.02562 * 20 19 18 23 23 N 1.31456 * 120.85230 * 359.72328 * 22 20 19 24 24 C 1.47021 * 108.70450 * 335.86832 * 14 13 12 25 25 H 0.96995 * 120.00289 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00077 * 359.97438 * 9 7 2 27 27 H 1.08998 * 111.00631 * 88.06394 * 12 10 9 28 28 H 1.09004 * 111.00792 * 324.20792 * 12 10 9 29 29 H 1.09002 * 110.36419 * 155.85111 * 13 12 10 30 30 H 1.08994 * 110.36559 * 278.05860 * 13 12 10 31 31 H 1.08004 * 120.45012 * 359.97258 * 18 17 15 32 32 H 1.08000 * 120.76622 * 180.02562 * 19 18 17 33 33 H 1.07996 * 119.56818 * 180.02562 * 22 20 19 34 34 H 1.08996 * 109.88310 * 120.48076 * 24 14 13 35 35 H 1.09002 * 109.88672 * 241.49116 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5549 -3.2390 0.5360 12 6 5.5254 -2.2886 0.6139 13 6 6.3126 -3.4327 -0.0728 14 7 5.7751 -3.4903 -1.4443 15 6 6.4209 -3.9800 -2.5211 16 8 5.8782 -3.9768 -3.6086 17 6 7.7913 -4.5220 -2.3793 18 6 8.4535 -5.0263 -3.4972 19 6 9.7346 -5.5306 -3.3503 20 6 10.3122 -5.5130 -2.0872 21 9 11.5602 -5.9959 -1.9005 22 6 9.5931 -4.9949 -1.0181 23 7 8.3799 -4.5185 -1.1894 24 6 4.4180 -2.9246 -1.4430 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3620 0.0004 27 1 5.5023 -2.4245 1.6951 28 1 5.9425 -1.3159 0.3527 29 1 7.3777 -3.2018 -0.0921 30 1 6.1390 -4.3762 0.4446 31 1 7.9735 -5.0246 -4.4647 32 1 10.2726 -5.9277 -4.1984 33 1 10.0382 -4.9787 -0.0343 34 1 4.3720 -2.0701 -2.1180 35 1 3.7000 -3.6828 -1.7556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968472850.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:35 Heat of formation + Delta-G solvation = -32.024449 kcal Electronic energy + Delta-G solvation = -20962.558147 eV Core-core repulsion = 17489.238994 eV Total energy + Delta-G solvation = -3473.319153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.10300 -41.82432 -40.28093 -38.73859 -36.08409 -33.94005 -33.42138 -32.32590 -31.24856 -29.34466 -26.41461 -25.22026 -24.68380 -23.61959 -21.96777 -21.02454 -19.80495 -18.83468 -18.70008 -18.13353 -17.51162 -16.98461 -16.85353 -16.44852 -15.87453 -15.69657 -15.39629 -14.97283 -14.79399 -14.64702 -14.38991 -14.17240 -14.11490 -13.81769 -13.44134 -13.23125 -12.99962 -12.52240 -12.36144 -12.15452 -11.84913 -11.64635 -11.41897 -11.11449 -11.06389 -10.56634 -10.19133 -9.66661 -9.40818 -8.03991 -5.39889 -0.66517 -0.02775 1.38020 1.42075 1.48757 1.50824 1.79763 2.47651 2.59055 2.77576 2.97756 3.25890 3.48937 3.52794 3.66920 3.73231 3.80490 3.96552 4.07280 4.30316 4.39915 4.50280 4.60914 4.71193 4.76051 4.80232 4.99562 5.03131 5.17248 5.22523 5.34886 5.47084 5.75401 6.19776 6.35793 6.49260 6.94988 7.04638 7.78251 7.97426 9.17081 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037631 B = 0.003545 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.884003 B = 7896.817054 C = 8169.160047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.954 3.046 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.245 1.245 7 C -0.238 4.238 8 H 0.060 0.940 9 N -0.739 5.739 10 C 0.169 3.831 11 H 0.074 0.926 12 C -0.135 4.135 13 C 0.112 3.888 14 N -0.594 5.594 15 C 0.569 3.431 16 O -0.579 6.579 17 C 0.056 3.944 18 C -0.084 4.084 19 C -0.103 4.103 20 C 0.074 3.926 21 F -0.122 7.122 22 C 0.079 3.921 23 N -0.435 5.435 24 C 0.090 3.910 25 H 0.259 0.741 26 H 0.369 0.631 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.185 0.815 33 H 0.207 0.793 34 H 0.048 0.952 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.035 -11.771 -1.205 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.781 3.219 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.169 1.169 7 C -0.368 4.368 8 H 0.078 0.922 9 N -0.381 5.381 10 C 0.059 3.941 11 H 0.092 0.908 12 C -0.174 4.174 13 C -0.010 4.010 14 N -0.325 5.325 15 C 0.358 3.642 16 O -0.459 6.459 17 C -0.080 4.080 18 C -0.105 4.105 19 C -0.129 4.129 20 C 0.052 3.948 21 F -0.100 7.100 22 C -0.083 4.083 23 N -0.146 5.146 24 C -0.036 4.036 25 H 0.067 0.933 26 H 0.203 0.797 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.102 0.898 31 H 0.176 0.824 32 H 0.202 0.798 33 H 0.223 0.777 34 H 0.066 0.934 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 26.091 -11.526 -1.096 28.544 hybrid contribution 0.128 0.684 -1.042 1.253 sum 26.219 -10.843 -2.139 28.453 Atomic orbital electron populations 1.69881 1.07213 1.26800 1.59280 1.25516 0.96090 1.01344 1.02305 0.85434 0.79012 0.79611 0.77886 1.21079 1.22106 1.16867 1.19061 0.82439 0.93617 1.41726 0.92225 1.42674 1.02557 1.03482 1.89377 1.21372 0.93004 0.88211 0.91490 0.90801 1.23168 0.93217 0.99160 1.01840 1.22791 1.00452 0.98814 0.78926 1.48448 1.16137 1.58023 1.09844 1.17997 0.85192 0.78168 0.82885 1.90774 1.68617 1.59319 1.27195 1.20862 0.94287 1.01669 0.91206 1.22091 0.94088 0.94216 1.00123 1.21947 0.94643 0.98470 0.97833 1.19144 0.81541 0.98341 0.95766 1.91575 1.37462 1.85156 1.95842 1.23541 0.89574 0.94675 1.00506 1.67834 1.10344 1.13289 1.23145 1.22839 0.82257 0.97101 1.01388 0.93259 0.79727 0.87363 0.90751 0.86284 0.89826 0.82399 0.79754 0.77660 0.93399 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.93 13.97 21.65 0.30 -62.63 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 3 Si 0.95 45.03 27.74 68.60 1.90 46.94 16 4 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.24 -10.15 6.52 99.48 0.65 -9.50 16 7 C -0.24 -13.36 10.44 84.03 0.88 -12.48 16 8 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 9 N -0.74 -33.49 4.95 -317.32 -1.57 -35.06 16 10 C 0.17 6.14 3.61 46.18 0.17 6.30 16 11 H 0.07 2.73 8.09 -2.39 -0.02 2.71 16 12 C -0.14 -3.51 6.71 31.99 0.21 -3.30 16 13 C 0.11 2.61 5.94 86.86 0.52 3.13 16 14 N -0.59 -18.51 3.33 -814.96 -2.71 -21.22 16 15 C 0.57 18.13 7.84 86.85 0.68 18.81 16 16 O -0.58 -22.52 16.65 -3.83 -0.06 -22.58 16 17 C 0.06 1.30 6.72 41.88 0.28 1.59 16 18 C -0.08 -1.50 9.63 22.60 0.22 -1.28 16 19 C -0.10 -1.20 10.15 22.48 0.23 -0.97 16 20 C 0.07 0.88 7.36 22.58 0.17 1.05 16 21 F -0.12 -1.43 17.28 44.97 0.78 -0.66 16 22 C 0.08 0.97 11.17 84.90 0.95 1.92 16 23 N -0.44 -8.10 6.58 -184.74 -1.22 -9.32 16 24 C 0.09 3.38 6.62 86.73 0.57 3.95 16 25 H 0.26 15.79 8.31 -92.71 -0.77 15.01 16 26 H 0.37 15.97 5.62 -92.71 -0.52 15.45 16 27 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.07 1.94 8.01 -2.38 -0.02 1.92 16 29 H 0.12 2.41 5.87 -2.39 -0.01 2.39 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 31 H 0.16 2.80 7.64 -2.91 -0.02 2.78 16 32 H 0.19 1.00 8.06 -2.91 -0.02 0.97 16 33 H 0.21 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.05 2.03 8.03 -2.39 -0.02 2.01 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -73.81 303.10 3.31 -70.50 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.55 Total: 18.42 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 5.34 Total: 15.62 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.20 Total: -128.24 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.06 Total: -22.58 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.78 Total: -0.66 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.94 kcal Total: -73.81 3.31 -70.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968472850.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.479 kcal (2) G-P(sol) polarization free energy of solvation -73.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds