Wall clock time and date at job start Fri Apr 10 2020 14:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99723 * 2 1 4 4 H 1.48504 * 109.46927 * 270.00168 * 3 2 1 5 5 H 1.48495 * 109.47152 * 30.00055 * 3 2 1 6 6 H 1.48501 * 109.47187 * 150.00476 * 3 2 1 7 7 C 1.38805 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00573 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00573 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.77591 * 36.78426 * 10 9 7 12 12 C 1.55159 * 110.72235 * 160.01938 * 10 9 7 13 13 C 1.54913 * 101.57952 * 153.86591 * 12 10 9 14 14 N 1.47426 * 104.83132 * 322.99216 * 13 12 10 15 15 C 1.34778 * 125.64548 * 204.08784 * 14 13 12 16 16 O 1.21566 * 119.99820 * 174.15464 * 15 14 13 17 17 C 1.47722 * 119.99818 * 354.15963 * 15 14 13 18 18 C 1.40147 * 120.53401 * 342.24151 * 17 15 14 19 19 C 1.38156 * 118.32324 * 179.78204 * 18 17 15 20 20 C 1.38749 * 119.28503 * 0.47658 * 19 18 17 21 21 F 1.35103 * 119.49283 * 179.78968 * 20 19 18 22 22 N 1.32146 * 121.01666 * 359.76256 * 20 19 18 23 23 C 1.31691 * 121.83893 * 0.02562 * 22 20 19 24 24 C 1.47018 * 108.70552 * 24.13174 * 14 13 12 25 25 H 0.96999 * 120.00539 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99915 * 359.97438 * 9 7 2 27 27 H 1.09004 * 111.00053 * 35.79152 * 12 10 9 28 28 H 1.08999 * 111.00843 * 271.94606 * 12 10 9 29 29 H 1.08999 * 110.36120 * 204.15504 * 13 12 10 30 30 H 1.09002 * 110.36196 * 81.83414 * 13 12 10 31 31 H 1.08001 * 120.84175 * 0.02597 * 18 17 15 32 32 H 1.07999 * 120.36012 * 180.26499 * 19 18 17 33 33 H 1.08005 * 119.70145 * 179.97438 * 23 22 20 34 34 H 1.08995 * 109.88624 * 118.35539 * 24 14 13 35 35 H 1.08996 * 109.88139 * 239.52347 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9584 -3.5835 0.6097 12 6 1.1516 -4.8142 0.4953 13 6 1.8016 -6.0374 -0.1982 14 7 2.2232 -5.5412 -1.5210 15 6 2.4088 -6.2976 -2.6209 16 8 2.6549 -5.7690 -3.6876 17 6 2.3131 -7.7690 -2.5303 18 6 2.4013 -8.4131 -1.2887 19 6 2.3013 -9.7906 -1.2564 20 6 2.1284 -10.4866 -2.4442 21 9 2.0344 -11.8341 -2.4179 22 7 2.0537 -9.8518 -3.6008 23 6 2.1396 -8.5401 -3.6800 24 6 2.4086 -4.0850 -1.4412 25 1 -0.4851 0.8400 0.0004 26 1 0.3557 -2.3881 0.0002 27 1 0.1235 -4.6759 0.1607 28 1 1.1981 -4.9097 1.5801 29 1 1.0742 -6.8415 -0.3089 30 1 2.6652 -6.3815 0.3709 31 1 2.5399 -7.8466 -0.3797 32 1 2.3605 -10.3204 -0.3171 33 1 2.0746 -8.0568 -4.6437 34 1 3.4452 -3.8306 -1.6618 35 1 1.7442 -3.5875 -2.1476 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018617017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:57 Heat of formation + Delta-G solvation = -6.991483 kcal Electronic energy + Delta-G solvation = -20906.492689 eV Core-core repulsion = 17434.259047 eV Total energy + Delta-G solvation = -3472.233642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.40956 -40.92627 -39.28032 -37.39865 -34.45473 -33.23431 -31.76034 -31.15663 -29.79177 -27.76651 -25.20760 -24.28751 -23.66257 -22.56513 -20.57234 -19.74251 -18.41513 -17.84109 -17.43235 -16.91040 -16.51010 -16.21699 -15.67070 -14.96563 -14.72896 -14.51353 -14.07957 -13.78610 -13.54671 -13.47065 -13.27131 -13.20418 -12.80191 -12.59176 -12.02077 -11.59448 -11.24615 -10.90217 -10.80209 -10.59724 -10.35653 -10.34355 -10.10664 -9.85754 -9.80669 -9.41077 -9.06623 -8.51641 -7.15953 -5.89465 -3.21008 0.18402 0.65976 2.60555 2.91007 3.15414 3.38030 3.39927 3.43677 3.44725 4.02048 4.26097 4.35438 4.43291 4.49340 4.73442 4.87155 5.04236 5.15338 5.25166 5.29555 5.39021 5.53555 5.56341 5.60874 5.79523 5.97900 6.11488 6.16846 6.23593 6.36239 6.54298 6.77733 7.16713 7.54794 7.59759 8.11406 8.27748 9.39919 9.92075 10.26486 11.32398 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044621 B = 0.003300 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.357604 B = 8483.761088 C = 8826.130075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.073 0.927 9 N -0.712 5.712 10 C 0.172 3.828 11 H 0.067 0.933 12 C -0.142 4.142 13 C 0.091 3.909 14 N -0.604 5.604 15 C 0.572 3.428 16 O -0.533 6.533 17 C -0.188 4.188 18 C -0.033 4.033 19 C -0.200 4.200 20 C 0.323 3.677 21 F -0.110 7.110 22 N -0.517 5.517 23 C 0.195 3.805 24 C 0.081 3.919 25 H 0.257 0.743 26 H 0.387 0.613 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.168 0.832 32 H 0.155 0.845 33 H 0.181 0.819 34 H 0.061 0.939 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 -19.678 1.160 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.382 4.382 8 H 0.091 0.909 9 N -0.352 5.352 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.180 4.180 13 C -0.032 4.032 14 N -0.337 5.337 15 C 0.360 3.640 16 O -0.411 6.411 17 C -0.193 4.193 18 C -0.059 4.059 19 C -0.221 4.221 20 C 0.170 3.830 21 F -0.089 7.089 22 N -0.231 5.231 23 C 0.037 3.963 24 C -0.043 4.043 25 H 0.067 0.933 26 H 0.222 0.778 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.185 0.815 32 H 0.173 0.827 33 H 0.198 0.802 34 H 0.080 0.920 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.816 -19.786 -0.184 20.152 hybrid contribution 0.221 1.007 0.666 1.227 sum 4.037 -18.779 0.481 19.214 Atomic orbital electron populations 1.69652 1.05200 1.26035 1.56725 1.24778 0.95527 0.97912 1.02169 0.86171 0.78676 0.83523 0.77674 1.21507 1.21681 1.20606 1.19244 0.91133 0.83880 1.43987 0.90881 1.42369 1.05832 0.99385 1.87626 1.21216 0.94883 0.86429 0.91518 0.91490 1.23110 1.00487 0.93968 1.00469 1.22720 0.98483 0.98172 0.83831 1.48452 1.66079 1.09821 1.09379 1.17532 0.78060 0.85162 0.83292 1.90815 1.49299 1.73693 1.27292 1.21092 1.07587 0.95435 0.95209 1.22512 0.90683 0.93765 0.98896 1.21827 1.06417 0.95138 0.98719 1.18479 0.95475 0.78753 0.90342 1.91646 1.92605 1.27775 1.96825 1.67143 1.16838 1.11652 1.27495 1.22780 0.88507 0.86078 0.98900 1.23363 1.01540 0.76901 1.02544 0.93269 0.77800 0.90235 0.89688 0.90494 0.90814 0.81511 0.82741 0.80202 0.92027 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.96 13.06 55.49 0.72 -26.23 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.25 -6.59 9.98 -15.06 -0.15 -6.74 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.71 -16.45 5.18 -51.65 -0.27 -16.72 16 10 C 0.17 3.00 3.59 -66.09 -0.24 2.76 16 11 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 12 C -0.14 -1.84 6.69 -24.58 -0.16 -2.01 16 13 C 0.09 0.94 4.93 -2.53 -0.01 0.93 16 14 N -0.60 -8.62 3.33 -171.68 -0.57 -9.19 16 15 C 0.57 8.55 7.72 -12.38 -0.10 8.45 16 16 O -0.53 -9.94 16.84 5.31 0.09 -9.85 16 17 C -0.19 -2.17 5.78 -104.83 -0.61 -2.78 16 18 C -0.03 -0.29 8.23 -38.90 -0.32 -0.61 16 19 C -0.20 -1.57 10.07 -39.42 -0.40 -1.97 16 20 C 0.32 3.36 8.41 -17.23 -0.14 3.21 16 21 F -0.11 -1.14 17.29 2.25 0.04 -1.10 16 22 N -0.52 -6.23 10.36 -13.21 -0.14 -6.37 16 23 C 0.20 2.28 10.76 -17.13 -0.18 2.09 16 24 C 0.08 1.42 6.63 -3.07 -0.02 1.40 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.39 9.56 7.71 -40.82 -0.31 9.24 16 27 H 0.08 1.12 8.00 -51.93 -0.42 0.70 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.65 6.49 -51.93 -0.34 0.31 16 30 H 0.07 0.58 7.00 -51.93 -0.36 0.21 16 31 H 0.17 1.09 4.11 -52.49 -0.22 0.87 16 32 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.18 1.97 7.76 -52.48 -0.41 1.56 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -31.56 302.91 -6.72 -38.27 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.71 Total: 5.56 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.43 Total: 4.46 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.25 Total: -58.51 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.56 -6.72 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018617017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.282 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds