Wall clock time and date at job start Fri Apr 10 2020 14:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99723 * 2 1 4 4 H 1.48504 * 109.46927 * 270.00168 * 3 2 1 5 5 H 1.48495 * 109.47152 * 30.00055 * 3 2 1 6 6 H 1.48501 * 109.47187 * 150.00476 * 3 2 1 7 7 C 1.38805 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00573 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00573 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.77591 * 36.78426 * 10 9 7 12 12 C 1.55159 * 110.72235 * 160.01938 * 10 9 7 13 13 C 1.54913 * 101.57952 * 153.86591 * 12 10 9 14 14 N 1.47426 * 104.83132 * 322.99216 * 13 12 10 15 15 C 1.34778 * 125.64548 * 204.08784 * 14 13 12 16 16 O 1.21566 * 119.99820 * 174.15464 * 15 14 13 17 17 C 1.47722 * 119.99818 * 354.15963 * 15 14 13 18 18 C 1.40147 * 120.53401 * 342.24151 * 17 15 14 19 19 C 1.38156 * 118.32324 * 179.78204 * 18 17 15 20 20 C 1.38749 * 119.28503 * 0.47658 * 19 18 17 21 21 F 1.35103 * 119.49283 * 179.78968 * 20 19 18 22 22 N 1.32146 * 121.01666 * 359.76256 * 20 19 18 23 23 C 1.31691 * 121.83893 * 0.02562 * 22 20 19 24 24 C 1.47018 * 108.70552 * 24.13174 * 14 13 12 25 25 H 0.96999 * 120.00539 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99915 * 359.97438 * 9 7 2 27 27 H 1.09004 * 111.00053 * 35.79152 * 12 10 9 28 28 H 1.08999 * 111.00843 * 271.94606 * 12 10 9 29 29 H 1.08999 * 110.36120 * 204.15504 * 13 12 10 30 30 H 1.09002 * 110.36196 * 81.83414 * 13 12 10 31 31 H 1.08001 * 120.84175 * 0.02597 * 18 17 15 32 32 H 1.07999 * 120.36012 * 180.26499 * 19 18 17 33 33 H 1.08005 * 119.70145 * 179.97438 * 23 22 20 34 34 H 1.08995 * 109.88624 * 118.35539 * 24 14 13 35 35 H 1.08996 * 109.88139 * 239.52347 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9584 -3.5835 0.6097 12 6 1.1516 -4.8142 0.4953 13 6 1.8016 -6.0374 -0.1982 14 7 2.2232 -5.5412 -1.5210 15 6 2.4088 -6.2976 -2.6209 16 8 2.6549 -5.7690 -3.6876 17 6 2.3131 -7.7690 -2.5303 18 6 2.4013 -8.4131 -1.2887 19 6 2.3013 -9.7906 -1.2564 20 6 2.1284 -10.4866 -2.4442 21 9 2.0344 -11.8341 -2.4179 22 7 2.0537 -9.8518 -3.6008 23 6 2.1396 -8.5401 -3.6800 24 6 2.4086 -4.0850 -1.4412 25 1 -0.4851 0.8400 0.0004 26 1 0.3557 -2.3881 0.0002 27 1 0.1235 -4.6759 0.1607 28 1 1.1981 -4.9097 1.5801 29 1 1.0742 -6.8415 -0.3089 30 1 2.6652 -6.3815 0.3709 31 1 2.5399 -7.8466 -0.3797 32 1 2.3605 -10.3204 -0.3171 33 1 2.0746 -8.0568 -4.6437 34 1 3.4452 -3.8306 -1.6618 35 1 1.7442 -3.5875 -2.1476 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018617017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:56 Heat of formation + Delta-G solvation = -29.445019 kcal Electronic energy + Delta-G solvation = -20907.466348 eV Core-core repulsion = 17434.259047 eV Total energy + Delta-G solvation = -3473.207300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -50.18205 -41.88544 -40.32648 -38.68398 -36.06150 -34.28975 -33.15847 -32.20349 -31.10962 -29.18076 -26.46239 -25.34388 -24.96273 -23.66818 -21.81253 -20.94231 -19.33249 -19.20289 -18.65737 -18.01155 -17.57432 -17.19560 -16.81101 -16.47900 -15.72613 -15.54740 -15.32711 -15.25153 -14.70976 -14.53528 -14.35643 -14.19524 -14.08833 -13.66420 -13.38667 -13.09036 -12.89337 -12.43799 -12.36121 -12.12015 -11.74095 -11.63640 -11.38444 -11.16348 -11.01876 -10.79103 -10.25697 -9.70580 -9.08900 -7.96724 -5.26504 -0.65425 -0.05536 1.48351 1.50237 1.57569 1.57681 1.79269 2.37249 2.50497 2.56241 3.22163 3.33848 3.40968 3.56525 3.70908 3.75228 3.92423 3.99510 4.25923 4.32628 4.36300 4.49028 4.56096 4.60365 4.71761 4.80306 4.89687 4.99863 5.17776 5.23834 5.38300 5.40956 5.53652 6.25323 6.33362 6.45822 6.95401 7.32475 8.05461 8.27022 9.26168 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044621 B = 0.003300 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.357604 B = 8483.761088 C = 8826.130075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.293 1.293 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.726 5.726 10 C 0.164 3.836 11 H 0.078 0.922 12 C -0.132 4.132 13 C 0.091 3.909 14 N -0.604 5.604 15 C 0.570 3.430 16 O -0.584 6.584 17 C -0.196 4.196 18 C -0.017 4.017 19 C -0.175 4.175 20 C 0.311 3.689 21 F -0.112 7.112 22 N -0.543 5.543 23 C 0.187 3.813 24 C 0.093 3.907 25 H 0.251 0.749 26 H 0.376 0.624 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.198 0.802 32 H 0.198 0.802 33 H 0.173 0.827 34 H 0.052 0.948 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -22.008 3.553 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.220 1.220 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.365 5.365 10 C 0.054 3.946 11 H 0.096 0.904 12 C -0.170 4.170 13 C -0.030 4.030 14 N -0.336 5.336 15 C 0.360 3.640 16 O -0.465 6.465 17 C -0.202 4.202 18 C -0.042 4.042 19 C -0.196 4.196 20 C 0.158 3.842 21 F -0.091 7.091 22 N -0.258 5.258 23 C 0.029 3.971 24 C -0.033 4.033 25 H 0.060 0.940 26 H 0.208 0.792 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.214 0.786 32 H 0.215 0.785 33 H 0.190 0.810 34 H 0.070 0.930 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.918 -22.182 2.239 22.830 hybrid contribution -0.082 1.589 -0.099 1.594 sum 4.836 -20.593 2.140 21.261 Atomic orbital electron populations 1.69795 1.06582 1.26133 1.59207 1.25531 0.96304 1.01066 1.03497 0.85214 0.78005 0.79800 0.77186 1.22048 1.22238 1.18996 1.19645 0.91602 0.85111 1.41300 0.90251 1.42549 1.05534 1.00702 1.87729 1.21477 0.95968 0.85741 0.91449 0.90380 1.23063 0.98801 0.92811 1.02325 1.23102 1.00782 0.97567 0.81553 1.48451 1.65802 1.08292 1.11014 1.18039 0.76933 0.86556 0.82517 1.90786 1.51572 1.74917 1.29252 1.20784 1.09634 0.92984 0.96772 1.22778 0.89028 0.94136 0.98295 1.22189 1.03591 0.94587 0.99200 1.18847 0.95607 0.78829 0.90914 1.91646 1.92620 1.27954 1.96832 1.67058 1.17881 1.11695 1.29125 1.22656 0.89223 0.86149 0.99043 1.22894 0.99812 0.79189 1.01452 0.93994 0.79155 0.91685 0.86909 0.87406 0.86452 0.78581 0.78507 0.81020 0.92993 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.53 13.06 21.65 0.28 -57.25 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.24 -12.87 9.98 84.03 0.84 -12.04 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.73 -33.78 5.18 -317.33 -1.64 -35.42 16 10 C 0.16 5.52 3.59 46.18 0.17 5.68 16 11 H 0.08 2.49 8.12 -2.39 -0.02 2.47 16 12 C -0.13 -3.02 6.69 31.99 0.21 -2.81 16 13 C 0.09 1.47 4.93 86.86 0.43 1.90 16 14 N -0.60 -16.22 3.33 -815.34 -2.71 -18.93 16 15 C 0.57 16.68 7.72 86.75 0.67 17.35 16 16 O -0.58 -22.60 16.84 -3.92 -0.07 -22.67 16 17 C -0.20 -4.16 5.78 -20.00 -0.12 -4.27 16 18 C -0.02 -0.22 8.23 22.71 0.19 -0.03 16 19 C -0.18 -1.87 10.07 22.37 0.23 -1.64 16 20 C 0.31 5.60 8.41 84.77 0.71 6.31 16 21 F -0.11 -2.04 17.29 44.97 0.78 -1.26 16 22 N -0.54 -12.48 10.36 -195.72 -2.03 -14.51 16 23 C 0.19 4.29 10.76 85.02 0.91 5.20 16 24 C 0.09 3.25 6.63 86.73 0.57 3.83 16 25 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.38 18.96 7.71 -92.71 -0.72 18.25 16 27 H 0.06 1.71 8.00 -2.39 -0.02 1.69 16 28 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.11 1.19 6.49 -2.39 -0.02 1.17 16 30 H 0.12 1.01 7.00 -2.39 -0.02 0.99 16 31 H 0.20 1.21 4.11 -2.91 -0.01 1.20 16 32 H 0.20 0.49 8.06 -2.91 -0.02 0.47 16 33 H 0.17 4.01 7.76 -2.91 -0.02 3.99 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.03 1.50 8.03 -2.39 -0.02 1.48 16 Total: -1.00 -72.97 302.91 2.35 -70.62 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.43 Total: 16.44 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 5.28 Total: 15.98 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -6.10 Total: -126.11 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.07 Total: -22.67 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.97 2.35 -70.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018617017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.176 kcal (2) G-P(sol) polarization free energy of solvation -72.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds