Wall clock time and date at job start Fri Apr 10 2020 14:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.89098 * 31.11259 * 10 9 7 12 12 C 1.55159 * 111.00840 * 154.99548 * 10 9 7 13 13 C 1.54322 * 102.94499 * 153.57161 * 12 10 9 14 14 N 1.47022 * 107.27131 * 337.80902 * 13 12 10 15 15 C 1.34772 * 125.64566 * 178.98048 * 14 13 12 16 16 O 1.21534 * 119.99972 * 179.97438 * 15 14 13 17 17 C 1.48048 * 120.00522 * 359.97438 * 15 14 13 18 18 C 1.39382 * 119.69578 * 179.97438 * 17 15 14 19 19 C 1.38467 * 119.09162 * 179.97438 * 18 17 15 20 20 C 1.38902 * 118.47276 * 0.02562 * 19 18 17 21 21 F 1.35098 * 120.35424 * 180.02562 * 20 19 18 22 22 C 1.38878 * 119.29231 * 359.97438 * 20 19 18 23 23 N 1.31458 * 120.86130 * 359.74383 * 22 20 19 24 24 C 1.47426 * 108.70354 * 358.94437 * 14 13 12 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.08998 * 110.72180 * 271.94451 * 12 10 9 28 28 H 1.09001 * 110.71273 * 35.21090 * 12 10 9 29 29 H 1.08997 * 109.88046 * 97.22707 * 13 12 10 30 30 H 1.08999 * 109.88345 * 218.38852 * 13 12 10 31 31 H 1.07996 * 120.45388 * 359.96486 * 18 17 15 32 32 H 1.08000 * 120.76083 * 180.02562 * 19 18 17 33 33 H 1.08010 * 119.56673 * 180.02562 * 22 20 19 34 34 H 1.09006 * 110.36031 * 265.28612 * 24 14 13 35 35 H 1.08995 * 110.37034 * 142.97033 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0069 -3.5577 0.5254 12 6 1.1988 -4.7951 0.6095 13 6 1.7705 -6.0599 -0.0650 14 7 2.4315 -5.6317 -1.3065 15 6 3.0731 -6.4396 -2.1737 16 8 3.5849 -5.9742 -3.1729 17 6 3.1544 -7.8940 -1.9091 18 6 3.8191 -8.7236 -2.8106 19 6 3.8881 -10.0819 -2.5506 20 6 3.2882 -10.5663 -1.3952 21 9 3.3330 -11.8847 -1.1039 22 6 2.6428 -9.6806 -0.5421 23 7 2.5984 -8.3950 -0.8127 24 6 2.2754 -4.1724 -1.4461 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 1.3316 -4.8408 1.6904 28 1 0.1472 -4.6639 0.3543 29 1 2.4949 -6.5368 0.5952 30 1 0.9627 -6.7544 -0.2956 31 1 4.2739 -8.3127 -3.6998 32 1 4.3967 -10.7493 -3.2305 33 1 2.1752 -10.0524 0.3577 34 1 1.4090 -3.9412 -2.0658 35 1 3.1767 -3.7336 -1.8739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018750637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:40 Heat of formation + Delta-G solvation = -16.177355 kcal Electronic energy + Delta-G solvation = -20911.987038 eV Core-core repulsion = 17439.355067 eV Total energy + Delta-G solvation = -3472.631971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.46875 -40.87037 -39.17851 -37.34790 -34.49245 -33.04842 -31.88254 -31.09376 -29.51178 -27.51675 -25.07903 -24.27111 -23.47195 -22.47395 -20.50499 -19.89897 -18.09536 -17.88640 -17.60485 -17.17254 -16.34418 -15.93016 -15.76291 -15.03602 -14.61641 -14.49605 -14.23959 -13.85569 -13.68787 -13.48784 -13.27487 -13.14725 -12.74563 -12.40997 -12.24940 -11.37530 -11.15660 -10.75084 -10.65166 -10.45764 -10.37338 -10.21715 -9.99874 -9.77389 -9.42456 -9.23620 -9.02537 -8.39873 -7.15917 -6.16999 -3.19168 0.13054 0.62938 2.51440 2.96303 3.48363 3.49313 3.51049 3.54142 3.71368 3.81206 4.23486 4.28051 4.41423 4.63144 4.83899 5.00227 5.18104 5.26051 5.31669 5.39283 5.44405 5.59419 5.68610 5.80700 5.99709 6.00343 6.10654 6.20141 6.33778 6.46458 6.52580 6.79059 7.20706 7.64359 7.75271 8.15590 8.68773 9.12404 9.98965 10.11896 11.30853 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.043581 B = 0.003319 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.328504 B = 8433.317485 C = 8860.949603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.040 4.040 3 Si 1.080 2.920 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.340 4.340 8 H 0.067 0.933 9 N -0.722 5.722 10 C 0.177 3.823 11 H 0.069 0.931 12 C -0.148 4.148 13 C 0.121 3.879 14 N -0.590 5.590 15 C 0.575 3.425 16 O -0.538 6.538 17 C 0.079 3.921 18 C -0.083 4.083 19 C -0.116 4.116 20 C 0.065 3.935 21 F -0.126 7.126 22 C 0.073 3.927 23 N -0.424 5.424 24 C 0.081 3.919 25 H 0.256 0.744 26 H 0.370 0.630 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.175 0.825 34 H 0.068 0.932 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 -22.596 -1.242 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.238 4.238 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.471 4.471 8 H 0.085 0.915 9 N -0.363 5.363 10 C 0.065 3.935 11 H 0.087 0.913 12 C -0.187 4.187 13 C -0.002 4.002 14 N -0.322 5.322 15 C 0.362 3.638 16 O -0.416 6.416 17 C -0.060 4.060 18 C -0.104 4.104 19 C -0.142 4.142 20 C 0.043 3.957 21 F -0.105 7.105 22 C -0.088 4.088 23 N -0.135 5.135 24 C -0.044 4.044 25 H 0.067 0.933 26 H 0.204 0.796 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.192 0.808 34 H 0.087 0.913 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.565 -20.084 -1.223 20.877 hybrid contribution 0.317 -2.734 -0.564 2.809 sum 5.882 -22.818 -1.787 23.632 Atomic orbital electron populations 1.70898 1.06074 1.28509 1.52969 1.25823 0.96999 1.01110 0.99888 0.83242 0.74256 0.75458 0.75983 1.20986 1.22144 1.22100 1.20078 0.92165 0.85582 1.49240 0.91469 1.42317 1.04864 1.00410 1.88693 1.21248 0.95317 0.85626 0.91331 0.91253 1.23067 1.00558 0.94621 1.00496 1.22071 0.96818 0.96400 0.84886 1.48377 1.51914 1.09320 1.22559 1.17373 0.79427 0.84071 0.82964 1.90804 1.47968 1.75370 1.27460 1.21361 0.97491 0.95288 0.91848 1.22071 0.96086 0.92036 1.00213 1.21684 0.99640 0.96380 0.96518 1.19090 1.00841 0.79130 0.96666 1.91547 1.94464 1.31353 1.93131 1.23042 0.97886 0.88108 0.99771 1.67962 1.15111 1.13225 1.17180 1.23492 1.02033 0.76714 1.02197 0.93322 0.79583 0.90188 0.90849 0.90811 0.91144 0.82303 0.82770 0.80828 0.91335 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 2 C -0.04 -1.15 5.50 -17.43 -0.10 -1.24 16 3 Si 1.08 25.63 29.92 -169.99 -5.09 20.54 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.34 -9.36 9.96 -15.06 -0.15 -9.51 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.52 5.24 -51.36 -0.27 -17.79 16 10 C 0.18 3.46 3.71 -65.79 -0.24 3.21 16 11 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 12 C -0.15 -2.28 6.60 -24.90 -0.16 -2.44 16 13 C 0.12 1.68 5.39 -3.06 -0.02 1.66 16 14 N -0.59 -9.70 3.33 -171.56 -0.57 -10.27 16 15 C 0.58 9.41 7.84 -12.24 -0.10 9.31 16 16 O -0.54 -10.28 16.58 5.34 0.09 -10.19 16 17 C 0.08 1.00 6.72 -83.02 -0.56 0.44 16 18 C -0.08 -0.84 9.63 -39.07 -0.38 -1.22 16 19 C -0.12 -0.90 10.15 -39.25 -0.40 -1.30 16 20 C 0.06 0.53 7.36 -39.10 -0.29 0.25 16 21 F -0.13 -1.04 17.28 2.25 0.04 -1.00 16 22 C 0.07 0.63 11.17 -17.48 -0.20 0.44 16 23 N -0.42 -4.80 6.84 -9.74 -0.07 -4.87 16 24 C 0.08 1.54 6.60 -2.53 -0.02 1.52 16 25 H 0.26 7.60 6.77 -40.82 -0.28 7.32 16 26 H 0.37 9.19 6.59 -40.82 -0.27 8.92 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.13 8.00 -51.93 -0.42 0.72 16 29 H 0.07 0.95 7.40 -51.93 -0.38 0.56 16 30 H 0.07 0.91 7.54 -51.93 -0.39 0.51 16 31 H 0.16 1.50 7.64 -52.49 -0.40 1.10 16 32 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 LS Contribution 305.14 15.07 4.60 4.60 Total: -1.00 -32.47 305.14 -6.98 -39.45 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.87 Total: 6.23 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.60 Total: 1.11 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.15 Total: -60.74 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.09 Total: 20.54 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.47 -6.98 -39.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018750637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.269 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds