Wall clock time and date at job start Fri Apr 10 2020 14:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.89098 * 31.11259 * 10 9 7 12 12 C 1.55159 * 111.00840 * 154.99548 * 10 9 7 13 13 C 1.54322 * 102.94499 * 153.57161 * 12 10 9 14 14 N 1.47022 * 107.27131 * 337.80902 * 13 12 10 15 15 C 1.34772 * 125.64566 * 178.98048 * 14 13 12 16 16 O 1.21534 * 119.99972 * 179.97438 * 15 14 13 17 17 C 1.48048 * 120.00522 * 359.97438 * 15 14 13 18 18 C 1.39382 * 119.69578 * 179.97438 * 17 15 14 19 19 C 1.38467 * 119.09162 * 179.97438 * 18 17 15 20 20 C 1.38902 * 118.47276 * 0.02562 * 19 18 17 21 21 F 1.35098 * 120.35424 * 180.02562 * 20 19 18 22 22 C 1.38878 * 119.29231 * 359.97438 * 20 19 18 23 23 N 1.31458 * 120.86130 * 359.74383 * 22 20 19 24 24 C 1.47426 * 108.70354 * 358.94437 * 14 13 12 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.08998 * 110.72180 * 271.94451 * 12 10 9 28 28 H 1.09001 * 110.71273 * 35.21090 * 12 10 9 29 29 H 1.08997 * 109.88046 * 97.22707 * 13 12 10 30 30 H 1.08999 * 109.88345 * 218.38852 * 13 12 10 31 31 H 1.07996 * 120.45388 * 359.96486 * 18 17 15 32 32 H 1.08000 * 120.76083 * 180.02562 * 19 18 17 33 33 H 1.08010 * 119.56673 * 180.02562 * 22 20 19 34 34 H 1.09006 * 110.36031 * 265.28612 * 24 14 13 35 35 H 1.08995 * 110.37034 * 142.97033 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0069 -3.5577 0.5254 12 6 1.1988 -4.7951 0.6095 13 6 1.7705 -6.0599 -0.0650 14 7 2.4315 -5.6317 -1.3065 15 6 3.0731 -6.4396 -2.1737 16 8 3.5849 -5.9742 -3.1729 17 6 3.1544 -7.8940 -1.9091 18 6 3.8191 -8.7236 -2.8106 19 6 3.8881 -10.0819 -2.5506 20 6 3.2882 -10.5663 -1.3952 21 9 3.3330 -11.8847 -1.1039 22 6 2.6428 -9.6806 -0.5421 23 7 2.5984 -8.3950 -0.8127 24 6 2.2754 -4.1724 -1.4461 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 1.3316 -4.8408 1.6904 28 1 0.1472 -4.6639 0.3543 29 1 2.4949 -6.5368 0.5952 30 1 0.9627 -6.7544 -0.2956 31 1 4.2739 -8.3127 -3.6998 32 1 4.3967 -10.7493 -3.2305 33 1 2.1752 -10.0524 0.3577 34 1 1.4090 -3.9412 -2.0658 35 1 3.1767 -3.7336 -1.8739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018750637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:39 Heat of formation + Delta-G solvation = -37.736758 kcal Electronic energy + Delta-G solvation = -20912.921924 eV Core-core repulsion = 17439.355067 eV Total energy + Delta-G solvation = -3473.566857 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.12774 -41.84770 -40.32666 -38.77329 -36.32601 -33.94789 -33.28409 -32.19684 -31.02180 -29.07730 -26.33986 -25.37580 -24.83876 -23.75360 -21.94716 -21.12460 -19.58759 -18.95905 -18.70817 -18.20241 -17.42084 -17.01488 -16.84863 -16.54098 -15.94213 -15.74643 -15.50820 -14.98681 -14.87813 -14.60482 -14.45952 -14.33702 -13.92760 -13.76734 -13.58079 -12.96321 -12.74123 -12.52074 -12.36761 -11.88289 -11.76436 -11.54890 -11.25997 -11.13674 -11.01787 -10.68380 -10.21877 -9.74827 -9.19964 -8.41647 -5.37952 -0.69108 -0.04326 1.46709 1.59298 1.68349 1.74192 1.85227 2.56476 2.68979 2.75553 2.95254 3.34122 3.46128 3.53644 3.65534 3.70950 3.84646 3.94054 4.06413 4.17725 4.31832 4.43975 4.58376 4.65426 4.69451 4.76327 4.89550 4.94340 5.07334 5.16054 5.28881 5.40361 5.58689 6.32170 6.45691 6.48162 6.89920 7.04364 7.93638 8.03741 9.09974 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.043581 B = 0.003319 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.328504 B = 8433.317485 C = 8860.949603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.098 4.098 3 Si 1.126 2.874 4 H -0.292 1.292 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.339 4.339 8 H 0.067 0.933 9 N -0.734 5.734 10 C 0.171 3.829 11 H 0.064 0.936 12 C -0.135 4.135 13 C 0.132 3.868 14 N -0.595 5.595 15 C 0.571 3.429 16 O -0.577 6.577 17 C 0.054 3.946 18 C -0.083 4.083 19 C -0.103 4.103 20 C 0.075 3.925 21 F -0.121 7.121 22 C 0.078 3.922 23 N -0.437 5.437 24 C 0.092 3.908 25 H 0.246 0.754 26 H 0.365 0.635 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.187 0.813 33 H 0.205 0.795 34 H 0.051 0.949 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.431 -25.236 -0.477 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.290 4.290 3 Si 0.951 3.049 4 H -0.218 1.218 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.470 4.470 8 H 0.085 0.915 9 N -0.375 5.375 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.174 4.174 13 C 0.010 3.990 14 N -0.326 5.326 15 C 0.360 3.640 16 O -0.457 6.457 17 C -0.083 4.083 18 C -0.104 4.104 19 C -0.129 4.129 20 C 0.053 3.947 21 F -0.100 7.100 22 C -0.084 4.084 23 N -0.148 5.148 24 C -0.034 4.034 25 H 0.057 0.943 26 H 0.198 0.802 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.177 0.823 32 H 0.204 0.796 33 H 0.222 0.778 34 H 0.069 0.931 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.391 -22.792 -0.447 23.675 hybrid contribution 0.109 -2.128 -0.810 2.279 sum 6.500 -24.920 -1.257 25.784 Atomic orbital electron populations 1.70996 1.07121 1.28091 1.55709 1.27172 0.97097 1.04574 1.00119 0.82652 0.73435 0.71708 0.77147 1.21801 1.20086 1.20745 1.20390 0.92387 0.86910 1.47322 0.91538 1.42431 1.04761 1.01261 1.89019 1.21387 0.95601 0.85235 0.91756 0.91799 1.22998 0.99695 0.93166 1.01534 1.22146 0.97461 0.95645 0.83779 1.48413 1.52521 1.07969 1.23684 1.17993 0.78230 0.85720 0.82098 1.90766 1.49429 1.76571 1.28973 1.20850 1.00424 0.93154 0.93868 1.22103 0.95668 0.92816 0.99764 1.21952 0.98714 0.95553 0.96690 1.19139 0.99913 0.79183 0.96424 1.91572 1.94293 1.31054 1.93055 1.23497 0.97279 0.87060 1.00598 1.67841 1.15508 1.14657 1.16768 1.23024 1.00075 0.79010 1.01259 0.94314 0.80194 0.88278 0.90877 0.89109 0.89477 0.82262 0.79614 0.77840 0.93111 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.28 13.70 21.65 0.30 -59.98 16 2 C -0.10 -5.65 5.50 84.86 0.47 -5.18 16 3 Si 1.13 51.94 29.92 68.60 2.05 53.99 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.34 -18.94 9.96 84.03 0.84 -18.11 16 8 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 9 N -0.73 -36.36 5.24 -316.40 -1.66 -38.02 16 10 C 0.17 6.73 3.71 46.39 0.17 6.91 16 11 H 0.06 2.58 8.09 -2.39 -0.02 2.57 16 12 C -0.14 -3.99 6.60 31.78 0.21 -3.78 16 13 C 0.13 3.42 5.39 86.73 0.47 3.89 16 14 N -0.59 -19.56 3.33 -814.97 -2.71 -22.27 16 15 C 0.57 18.79 7.84 86.85 0.68 19.47 16 16 O -0.58 -22.75 16.58 -3.82 -0.06 -22.81 16 17 C 0.05 1.30 6.72 41.89 0.28 1.58 16 18 C -0.08 -1.52 9.63 22.60 0.22 -1.31 16 19 C -0.10 -1.26 10.15 22.48 0.23 -1.03 16 20 C 0.08 0.96 7.36 22.58 0.17 1.13 16 21 F -0.12 -1.51 17.28 44.97 0.78 -0.73 16 22 C 0.08 1.06 11.17 84.90 0.95 2.01 16 23 N -0.44 -8.80 6.84 -184.73 -1.26 -10.07 16 24 C 0.09 3.64 6.60 86.85 0.57 4.21 16 25 H 0.25 15.11 6.77 -92.71 -0.63 14.48 16 26 H 0.37 18.64 6.59 -92.71 -0.61 18.03 16 27 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.07 2.19 8.00 -2.39 -0.02 2.17 16 29 H 0.09 2.10 7.40 -2.39 -0.02 2.08 16 30 H 0.09 2.03 7.54 -2.39 -0.02 2.01 16 31 H 0.16 2.87 7.64 -2.91 -0.02 2.85 16 32 H 0.19 1.07 8.06 -2.91 -0.02 1.04 16 33 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.05 2.20 8.04 -2.39 -0.02 2.18 16 Total: -1.00 -71.87 305.14 3.34 -68.54 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.66 Total: 21.58 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 5.25 Total: 9.79 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -5.34 Total: -130.34 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.78 Total: -0.73 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 2.05 Total: 53.99 kcal Total: -71.87 3.34 -68.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018750637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.799 kcal (2) G-P(sol) polarization free energy of solvation -71.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds