Wall clock time and date at job start Fri Apr 10 2020 14:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48510 * 109.46891 * 239.99833 * 3 2 1 5 5 H 1.48496 * 109.47509 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47271 * 120.00176 * 3 2 1 7 7 C 1.38812 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99927 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.91109 * 23.74997 * 10 9 7 12 12 C 1.53787 * 113.61210 * 155.00261 * 10 9 7 13 13 C 1.53779 * 87.07963 * 139.97940 * 12 10 9 14 14 H 1.09007 * 113.61383 * 220.01369 * 13 12 10 15 15 N 1.46506 * 113.61276 * 89.20243 * 13 12 10 16 16 C 1.34776 * 119.99649 * 155.00300 * 15 13 12 17 17 O 1.21549 * 120.00340 * 359.97438 * 16 15 13 18 18 C 1.47847 * 119.99663 * 179.97438 * 16 15 13 19 19 C 1.39558 * 120.54774 * 359.97438 * 18 16 15 20 20 N 1.31651 * 120.62145 * 179.97438 * 19 18 16 21 21 C 1.31935 * 121.91190 * 0.02562 * 20 19 18 22 22 C 1.38541 * 121.04408 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.37415 * 180.02562 * 22 21 20 24 24 C 1.38616 * 119.24864 * 359.78530 * 22 21 20 25 25 C 1.53779 * 87.08402 * 334.56577 * 13 12 10 26 26 H 0.96994 * 120.00158 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99584 * 0.02562 * 9 7 2 28 28 H 1.08997 * 113.61028 * 254.52900 * 12 10 9 29 29 H 1.08998 * 113.61447 * 25.34434 * 12 10 9 30 30 H 0.96998 * 119.99623 * 334.98964 * 15 13 12 31 31 H 1.08001 * 119.69079 * 0.02562 * 19 18 16 32 32 H 1.08005 * 119.48227 * 179.97438 * 21 20 19 33 33 H 1.07997 * 120.86848 * 180.22880 * 24 22 21 34 34 H 1.09002 * 113.61557 * 270.88569 * 25 13 12 35 35 H 1.09004 * 113.61501 * 139.97990 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0662 -3.5647 0.4049 12 6 1.2603 -4.8288 0.5960 13 6 1.8481 -5.6975 -0.5285 14 1 1.1335 -6.4012 -0.9556 15 7 3.1248 -6.3253 -0.1786 16 6 3.5091 -7.4602 -0.7956 17 8 2.7963 -7.9633 -1.6419 18 6 4.7977 -8.0934 -0.4430 19 6 5.6253 -7.5253 0.5266 20 7 6.7728 -8.0882 0.8422 21 6 7.1871 -9.1992 0.2636 22 6 6.4244 -9.8258 -0.7085 23 9 6.8614 -10.9634 -1.2917 24 6 5.2055 -9.2751 -1.0724 25 6 1.9992 -4.4021 -1.3433 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 -0.0002 28 1 1.5918 -5.1212 1.5923 29 1 0.1800 -4.6996 0.5304 30 1 3.6935 -5.9239 0.4969 31 1 5.3211 -6.6159 1.0234 32 1 8.1358 -9.6271 0.5524 33 1 4.5881 -9.7437 -1.8245 34 1 1.1209 -4.1569 -1.9404 35 1 2.9274 -4.3501 -1.9125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020064344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:23 Heat of formation + Delta-G solvation = -7.662425 kcal Electronic energy + Delta-G solvation = -20449.696559 eV Core-core repulsion = 16977.433823 eV Total energy + Delta-G solvation = -3472.262736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.43312 -40.96798 -39.59867 -37.97734 -34.24247 -33.14618 -32.75217 -31.27794 -29.84495 -25.67573 -25.20614 -24.32496 -24.06851 -22.31841 -21.24635 -19.17531 -18.65682 -17.74062 -17.39272 -17.16327 -16.43015 -16.30599 -15.86191 -15.17912 -14.90228 -14.47553 -14.31521 -13.96911 -13.72331 -13.67470 -13.52605 -12.85452 -12.71186 -12.23428 -11.93045 -11.70667 -10.93320 -10.86255 -10.65695 -10.42144 -10.38967 -10.28242 -9.98566 -9.88084 -9.62731 -9.53800 -9.00565 -8.89881 -7.03396 -5.83836 -3.13347 0.04719 0.50334 2.48805 2.82735 3.30387 3.40019 3.44850 3.45687 3.51158 3.80320 4.20796 4.24638 4.32558 4.54218 4.63694 4.89508 5.07363 5.11853 5.27445 5.37181 5.42712 5.43399 5.79932 5.81630 5.99247 6.03530 6.18506 6.24403 6.36355 6.54391 6.60042 6.98395 7.19883 7.34625 7.62999 7.98750 8.34402 9.45748 10.02305 10.36479 11.38312 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030609 B = 0.003114 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.547066 B = 8988.209925 C = 9566.573531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.248 4.248 8 H 0.071 0.929 9 N -0.711 5.711 10 C 0.166 3.834 11 H 0.074 0.926 12 C -0.159 4.159 13 C 0.114 3.886 14 H 0.099 0.901 15 N -0.696 5.696 16 C 0.563 3.437 17 O -0.531 6.531 18 C -0.152 4.152 19 C 0.125 3.875 20 N -0.457 5.457 21 C 0.095 3.905 22 C 0.043 3.957 23 F -0.125 7.125 24 C -0.053 4.053 25 C -0.176 4.176 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.401 0.599 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.161 0.839 34 H 0.088 0.912 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.476 -19.236 1.280 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.089 0.911 9 N -0.349 5.349 10 C 0.053 3.947 11 H 0.092 0.908 12 C -0.199 4.199 13 C 0.009 3.991 14 H 0.117 0.883 15 N -0.346 5.346 16 C 0.348 3.652 17 O -0.408 6.408 18 C -0.158 4.158 19 C -0.033 4.033 20 N -0.164 5.164 21 C -0.063 4.063 22 C 0.021 3.979 23 F -0.104 7.104 24 C -0.080 4.080 25 C -0.218 4.218 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.236 0.764 31 H 0.187 0.813 32 H 0.190 0.810 33 H 0.179 0.821 34 H 0.106 0.894 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.579 -19.025 1.312 22.311 hybrid contribution -0.004 0.521 -0.516 0.733 sum 11.576 -18.505 0.796 21.841 Atomic orbital electron populations 1.69644 1.05164 1.25989 1.57124 1.24772 0.95524 0.97837 1.02588 0.86263 0.78562 0.83422 0.77897 1.21193 1.21648 1.21170 1.19245 0.91042 0.84209 1.43423 0.91123 1.42388 1.05783 0.99812 1.86934 1.21633 0.95112 0.85276 0.92632 0.90786 1.23879 1.01804 0.97088 0.97109 1.21909 0.84367 0.94270 0.98551 0.88287 1.45616 1.22436 1.25030 1.41532 1.17846 0.84879 0.80782 0.81688 1.90799 1.54320 1.63487 1.32220 1.20989 0.97514 0.97226 1.00034 1.23163 0.88858 0.98570 0.92737 1.67780 1.14896 1.08797 1.24928 1.23174 0.99938 0.91554 0.91632 1.18675 0.95353 0.86297 0.97548 1.91559 1.89152 1.46972 1.82712 1.21805 0.94126 0.93861 0.98175 1.24336 1.02198 0.94917 1.00379 0.93317 0.77961 0.91606 0.88795 0.76358 0.81299 0.80954 0.82108 0.89355 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.71 -17.00 5.40 -52.64 -0.28 -17.28 16 10 C 0.17 3.00 4.36 -67.12 -0.29 2.71 16 11 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 12 C -0.16 -2.32 7.58 -25.92 -0.20 -2.52 16 13 C 0.11 1.58 4.32 -67.12 -0.29 1.30 16 14 H 0.10 1.45 7.46 -51.93 -0.39 1.06 16 15 N -0.70 -8.06 5.22 -53.96 -0.28 -8.34 16 16 C 0.56 7.05 7.78 -12.33 -0.10 6.96 16 17 O -0.53 -8.50 16.02 5.32 0.09 -8.41 16 18 C -0.15 -1.53 5.89 -104.83 -0.62 -2.15 16 19 C 0.13 1.09 10.71 -17.14 -0.18 0.91 16 20 N -0.46 -4.22 10.34 -12.86 -0.13 -4.35 16 21 C 0.10 0.75 11.16 -17.40 -0.19 0.55 16 22 C 0.04 0.37 7.33 -39.33 -0.29 0.08 16 23 F -0.13 -1.10 17.28 2.25 0.04 -1.06 16 24 C -0.05 -0.50 9.70 -38.80 -0.38 -0.88 16 25 C -0.18 -2.92 7.68 -25.92 -0.20 -3.12 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.39 9.83 7.92 -40.82 -0.32 9.50 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 30 H 0.40 3.64 6.77 -40.82 -0.28 3.37 16 31 H 0.17 1.08 6.42 -52.49 -0.34 0.75 16 32 H 0.17 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.16 1.50 7.73 -52.49 -0.41 1.10 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -31.83 311.33 -6.97 -38.80 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -3.81 Total: 9.28 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.98 Total: -3.37 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.03 Total: -56.76 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.83 -6.97 -38.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020064344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.136 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds