Wall clock time and date at job start Fri Apr 10 2020 14:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00062 * 2 1 4 4 H 1.48495 * 109.47512 * 274.98966 * 3 2 1 5 5 H 1.48497 * 109.47340 * 34.99222 * 3 2 1 6 6 H 1.48505 * 109.47065 * 154.99134 * 3 2 1 7 7 C 1.38814 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00449 * 185.06328 * 7 2 1 9 9 N 1.36942 * 119.99910 * 5.05834 * 7 2 1 10 10 C 1.47575 * 134.49128 * 173.48748 * 9 7 2 11 11 C 1.53946 * 86.11741 * 155.35721 * 10 9 7 12 12 N 1.46503 * 113.74064 * 137.94988 * 11 10 9 13 13 C 1.34780 * 119.99723 * 156.92523 * 12 11 10 14 14 O 1.21284 * 119.99887 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.50703 * 109.47329 * 180.02562 * 15 13 12 17 17 C 1.38234 * 119.59479 * 124.99393 * 16 15 13 18 18 C 1.38587 * 119.19086 * 180.02562 * 17 16 15 19 19 C 1.38877 * 118.39759 * 0.25051 * 18 17 16 20 20 F 1.35100 * 120.44048 * 179.74868 * 19 18 17 21 21 C 1.38422 * 119.11688 * 359.53018 * 19 18 17 22 22 N 1.31854 * 119.58426 * 305.01834 * 16 15 13 23 23 C 1.47814 * 134.45546 * 353.35093 * 9 7 2 24 24 H 0.97004 * 120.00407 * 359.97438 * 1 2 3 25 25 H 1.08997 * 113.77732 * 41.05329 * 10 9 7 26 26 H 1.09003 * 113.76667 * 269.65602 * 10 9 7 27 27 H 1.08999 * 113.74188 * 269.14922 * 11 10 9 28 28 H 0.96994 * 120.00161 * 336.92134 * 12 11 10 29 29 H 1.08993 * 109.47542 * 59.99702 * 15 13 12 30 30 H 1.09005 * 109.46860 * 299.99619 * 15 13 12 31 31 H 1.08002 * 120.40202 * 0.02772 * 17 16 15 32 32 H 1.08003 * 120.79629 * 179.97438 * 18 17 16 33 33 H 1.08001 * 119.64091 * 180.20523 * 21 19 18 34 34 H 1.08995 * 113.76803 * 90.37771 * 23 9 7 35 35 H 1.09001 * 113.83272 * 318.91571 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0870 -1.2041 0.0820 9 7 1.3295 -2.3858 -0.1056 10 6 1.7285 -3.7983 -0.2581 11 6 0.3708 -4.1419 0.3812 12 7 -0.3176 -5.2631 -0.2633 13 6 -1.2390 -5.9706 0.4201 14 8 -1.4979 -5.6793 1.5686 15 6 -1.9468 -7.1243 -0.2426 16 6 -2.9196 -7.7417 0.7288 17 6 -4.2499 -7.8686 0.3751 18 6 -5.1373 -8.4371 1.2751 19 6 -4.6516 -8.8547 2.5073 20 9 -5.4812 -9.4098 3.4177 21 6 -3.3052 -8.6989 2.7886 22 7 -2.4912 -8.1537 1.9058 23 6 -0.1003 -2.7609 -0.1094 24 1 -0.4851 0.8400 0.0004 25 1 2.5858 -4.0812 0.3527 26 1 1.8194 -4.1196 -1.2957 27 1 0.4074 -4.2332 1.4667 28 1 -0.1103 -5.4962 -1.1817 29 1 -1.2152 -7.8717 -0.5492 30 1 -2.4873 -6.7644 -1.1181 31 1 -4.5934 -7.5289 -0.5908 32 1 -6.1822 -8.5486 1.0259 33 1 -2.9178 -9.0238 3.7429 34 1 -0.5477 -2.7767 -1.1031 35 1 -0.7003 -2.2168 0.6201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030542160.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:06 Heat of formation + Delta-G solvation = 13.854901 kcal Electronic energy + Delta-G solvation = -20504.288867 eV Core-core repulsion = 17032.959192 eV Total energy + Delta-G solvation = -3471.329675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.17940 -40.53113 -39.22196 -37.44433 -33.48355 -32.87130 -32.68208 -31.75638 -28.47343 -27.10757 -24.82524 -24.20594 -23.46429 -22.37206 -20.20516 -19.57512 -17.87174 -17.57432 -16.80740 -16.66497 -16.48499 -15.95381 -15.46198 -15.10631 -14.77694 -14.30076 -14.06907 -13.88660 -13.72344 -13.25569 -13.03472 -12.76728 -12.34148 -12.14091 -11.81536 -11.45665 -11.40055 -10.88179 -10.78007 -10.44029 -10.15328 -10.03751 -9.76443 -9.55109 -9.47822 -8.99545 -8.80969 -8.40450 -6.91434 -5.79674 -3.12596 0.67261 0.90534 2.96151 3.26439 3.38950 3.43635 3.46357 3.66045 3.77303 4.07551 4.35245 4.46128 4.50530 4.63401 4.96111 5.08645 5.18075 5.22343 5.31169 5.46346 5.54328 5.60159 5.60760 5.70887 6.03160 6.22285 6.38008 6.42682 6.57676 6.78636 7.23328 7.36730 7.55547 7.70535 7.90689 7.95342 8.60349 9.01633 9.67970 10.55586 11.37642 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038607 B = 0.002981 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.074420 B = 9389.712732 C = 9623.736090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.226 4.226 8 H 0.082 0.918 9 N -0.608 5.608 10 C 0.112 3.888 11 C 0.093 3.907 12 N -0.718 5.718 13 C 0.515 3.485 14 O -0.526 6.526 15 C -0.094 4.094 16 C 0.138 3.862 17 C -0.138 4.138 18 C -0.110 4.110 19 C 0.039 3.961 20 F -0.133 7.133 21 C 0.082 3.918 22 N -0.427 5.427 23 C 0.157 3.843 24 H 0.255 0.745 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.109 0.891 28 H 0.396 0.604 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.166 0.834 34 H 0.030 0.970 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.700 -19.724 -2.141 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.012 4.012 12 N -0.369 5.369 13 C 0.299 3.701 14 O -0.401 6.401 15 C -0.135 4.135 16 C 0.000 4.000 17 C -0.157 4.157 18 C -0.136 4.136 19 C 0.018 3.982 20 F -0.112 7.112 21 C -0.077 4.077 22 N -0.135 5.135 23 C 0.030 3.970 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.127 0.873 28 H 0.229 0.771 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.183 0.817 34 H 0.048 0.952 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.987 -19.056 -1.019 20.687 hybrid contribution -0.592 0.691 -0.662 1.125 sum -8.579 -18.364 -1.681 20.339 Atomic orbital electron populations 1.69848 1.05097 1.25503 1.55843 1.24852 0.95694 0.97663 1.02057 0.86095 0.78754 0.83412 0.77490 1.21582 1.21641 1.20470 1.18994 0.90742 0.81719 1.43933 0.90015 1.45709 1.02447 1.00573 1.84699 1.22871 0.94786 0.86708 0.97091 1.23884 0.93250 0.85328 0.98729 1.46099 1.41039 1.33361 1.16379 1.20121 0.80115 0.83019 0.86814 1.90741 1.63706 1.68413 1.17268 1.20654 0.98216 0.97402 0.97206 1.20712 0.92243 0.95084 0.91999 1.21884 0.93055 0.99735 1.01067 1.21594 1.01540 0.98171 0.92310 1.18863 0.89878 1.00725 0.88756 1.91513 1.71275 1.82917 1.65497 1.22917 0.88088 0.96756 0.99955 1.67530 1.37856 1.06774 1.01302 1.22652 0.88027 0.88160 0.98130 0.93542 0.93315 0.94716 0.87271 0.77055 0.86893 0.87122 0.83616 0.83553 0.81661 0.95222 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.52 11.51 55.49 0.64 -26.88 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.39 10.70 -15.06 -0.16 -6.55 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.61 -15.64 3.70 -177.89 -0.66 -16.30 16 10 C 0.11 2.23 8.69 -2.97 -0.03 2.20 16 11 C 0.09 1.80 4.40 -70.15 -0.31 1.49 16 12 N -0.72 -10.53 5.37 -55.34 -0.30 -10.83 16 13 C 0.52 7.77 7.76 -10.99 -0.09 7.68 16 14 O -0.53 -10.51 14.95 5.55 0.08 -10.43 16 15 C -0.09 -0.93 6.10 -29.04 -0.18 -1.11 16 16 C 0.14 1.60 5.76 -82.58 -0.48 1.13 16 17 C -0.14 -1.24 9.71 -39.45 -0.38 -1.63 16 18 C -0.11 -0.98 10.16 -39.22 -0.40 -1.38 16 19 C 0.04 0.42 7.34 -39.28 -0.29 0.13 16 20 F -0.13 -1.42 17.28 2.25 0.04 -1.38 16 21 C 0.08 0.96 11.17 -17.47 -0.20 0.76 16 22 N -0.43 -5.82 9.22 -9.41 -0.09 -5.91 16 23 C 0.16 3.74 7.24 -2.84 -0.02 3.72 16 24 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 27 H 0.11 2.34 7.51 -51.93 -0.39 1.95 16 28 H 0.40 4.43 8.71 -40.82 -0.36 4.07 16 29 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 0.73 7.87 -51.93 -0.41 0.32 16 31 H 0.15 0.85 7.95 -52.49 -0.42 0.44 16 32 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.95 7.37 -51.93 -0.38 1.57 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -35.59 311.65 -7.26 -42.85 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.03 Total: 0.79 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.62 Total: 6.20 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.40 Total: -59.91 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.59 -7.26 -42.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030542160.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.707 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds