Wall clock time and date at job start Fri Apr 10 2020 14:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00457 * 2 1 4 4 H 1.48506 * 109.47436 * 269.99948 * 3 2 1 5 5 H 1.48509 * 109.47177 * 29.99811 * 3 2 1 6 6 H 1.48506 * 109.47490 * 149.99952 * 3 2 1 7 7 C 1.38813 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00442 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.49676 * 180.02562 * 9 7 2 11 11 C 1.53952 * 86.11736 * 155.35762 * 10 9 7 12 12 C 1.52997 * 113.74041 * 137.95092 * 11 10 9 13 13 N 1.46501 * 109.47159 * 176.92616 * 12 11 10 14 14 C 1.34771 * 120.00074 * 180.02562 * 13 12 11 15 15 O 1.21565 * 120.00353 * 359.97438 * 14 13 12 16 16 C 1.47733 * 119.99915 * 179.97438 * 14 13 12 17 17 C 1.40150 * 120.52680 * 179.97438 * 16 14 13 18 18 C 1.38155 * 118.32278 * 179.97438 * 17 16 14 19 19 C 1.38758 * 119.28024 * 0.02562 * 18 17 16 20 20 F 1.35099 * 119.49164 * 180.02562 * 19 18 17 21 21 N 1.32146 * 121.01869 * 359.97438 * 19 18 17 22 22 C 1.31693 * 121.83785 * 0.03860 * 21 19 18 23 23 C 1.47810 * 134.44900 * 359.86813 * 9 7 2 24 24 H 0.97001 * 119.99180 * 0.02562 * 1 2 3 25 25 H 1.09004 * 113.76521 * 41.05736 * 10 9 7 26 26 H 1.08990 * 113.76946 * 269.65948 * 10 9 7 27 27 H 1.09000 * 113.73886 * 269.15923 * 11 10 9 28 28 H 1.09001 * 109.46756 * 56.92809 * 12 11 10 29 29 H 1.08990 * 109.47313 * 296.92684 * 12 11 10 30 30 H 0.97006 * 119.99561 * 359.97438 * 13 12 11 31 31 H 1.08003 * 120.84178 * 359.96053 * 17 16 14 32 32 H 1.07997 * 120.36063 * 179.72967 * 18 17 16 33 33 H 1.08000 * 119.69912 * 179.97438 * 22 21 19 34 34 H 1.09002 * 113.76838 * 90.38238 * 23 9 7 35 35 H 1.09002 * 113.84464 * 318.91335 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7199 -3.8102 -0.0005 11 6 0.3468 -4.0829 0.6399 12 6 -0.3638 -5.3135 0.0729 13 7 -1.6205 -5.5277 0.7949 14 6 -2.4193 -6.5619 0.4652 15 8 -2.0973 -7.3168 -0.4316 16 6 -3.6862 -6.7781 1.1937 17 6 -4.5254 -7.8497 0.8597 18 6 -5.6990 -8.0096 1.5710 19 6 -6.0065 -7.1120 2.5835 20 9 -7.1527 -7.2646 3.2821 21 7 -5.1950 -6.1108 2.8756 22 6 -4.0663 -5.9188 2.2249 23 6 -0.1059 -2.7569 0.0024 24 1 -0.4849 0.8401 -0.0004 25 1 2.5622 -4.0324 0.6547 26 1 1.8316 -4.2351 -0.9980 27 1 0.3593 -4.0638 1.7297 28 1 0.2759 -6.1883 0.1896 29 1 -0.5748 -5.1561 -0.9847 30 1 -1.8772 -4.9255 1.5108 31 1 -4.2616 -8.5332 0.0662 32 1 -6.3721 -8.8214 1.3382 33 1 -3.4290 -5.0889 2.4922 34 1 -0.5320 -2.8716 -0.9943 35 1 -0.7185 -2.1401 0.6599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031580005.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:06 Heat of formation + Delta-G solvation = -6.394994 kcal Electronic energy + Delta-G solvation = -20428.876434 eV Core-core repulsion = 16956.668658 eV Total energy + Delta-G solvation = -3472.207776 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.18855 -41.68665 -40.27492 -39.44472 -35.87810 -34.21280 -33.86753 -32.47874 -30.38899 -27.71328 -26.51970 -25.48996 -24.92981 -23.60803 -21.92078 -20.77094 -19.37800 -18.81141 -18.64132 -18.43524 -17.25700 -16.96203 -16.87352 -16.36959 -16.11542 -15.74053 -15.56535 -15.03540 -14.76911 -14.52722 -14.30307 -14.17526 -14.00537 -13.86492 -13.27876 -13.07218 -12.87256 -12.51241 -12.22620 -11.84213 -11.60702 -11.37206 -11.22795 -11.18893 -10.85486 -10.76474 -10.31956 -10.00657 -8.89513 -7.89632 -5.22099 -0.66433 -0.03761 1.46760 1.48058 1.56685 1.64729 2.04304 2.35729 2.48660 2.57679 3.28037 3.31924 3.42060 3.53987 3.65964 3.74726 3.84801 4.08835 4.17798 4.38996 4.49300 4.62055 4.73549 4.81353 4.85167 4.89951 4.94112 5.12568 5.27850 5.34098 5.38878 5.57242 5.68310 5.96559 6.36215 6.45699 6.94346 7.09066 7.62718 8.58226 9.27145 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.003187 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.648692 B = 8783.307160 C = 9599.421326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.235 4.235 8 H 0.083 0.917 9 N -0.647 5.647 10 C 0.126 3.874 11 C -0.116 4.116 12 C 0.142 3.858 13 N -0.708 5.708 14 C 0.566 3.434 15 O -0.571 6.571 16 C -0.202 4.202 17 C 0.012 3.988 18 C -0.182 4.182 19 C 0.314 3.686 20 F -0.112 7.112 21 N -0.541 5.541 22 C 0.176 3.824 23 C 0.163 3.837 24 H 0.248 0.752 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.412 0.588 31 H 0.172 0.828 32 H 0.189 0.811 33 H 0.190 0.810 34 H 0.013 0.987 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.961 -17.513 4.733 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.373 5.373 10 C 0.001 3.999 11 C -0.135 4.135 12 C 0.017 3.983 13 N -0.359 5.359 14 C 0.353 3.647 15 O -0.451 6.451 16 C -0.208 4.208 17 C -0.014 4.014 18 C -0.203 4.203 19 C 0.161 3.839 20 F -0.091 7.091 21 N -0.256 5.256 22 C 0.018 3.982 23 C 0.038 3.962 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.250 0.750 31 H 0.189 0.811 32 H 0.206 0.794 33 H 0.206 0.794 34 H 0.031 0.969 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.936 -17.142 4.807 20.388 hybrid contribution 0.184 1.098 -0.418 1.189 sum -9.752 -16.044 4.389 19.282 Atomic orbital electron populations 1.69987 1.06320 1.25524 1.58292 1.25588 0.96579 1.00739 1.03102 0.85111 0.77799 0.79291 0.77328 1.21659 1.22022 1.19245 1.19431 0.90865 0.83524 1.42523 0.89961 1.46410 1.03908 1.00717 1.86281 1.22701 0.95770 0.83412 0.98039 1.23420 0.96242 0.92855 1.00994 1.21268 0.83957 0.97407 0.95619 1.45880 1.21998 1.29542 1.38485 1.18066 0.83382 0.80648 0.82572 1.90775 1.74852 1.47107 1.32390 1.20988 0.97772 1.00790 1.01244 1.21865 0.89950 0.93734 0.95834 1.22085 0.99891 1.02102 0.96184 1.18731 0.83042 0.92157 0.89978 1.91642 1.45299 1.94316 1.77861 1.67015 1.06102 1.21421 1.31058 1.23031 0.90213 0.96584 0.88351 1.22307 0.86904 0.91001 0.95993 0.94327 0.91974 0.93441 0.87526 0.89927 0.92349 0.75030 0.81075 0.79376 0.79355 0.96946 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.55 11.39 21.65 0.25 -56.30 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 3 Si 0.98 45.31 29.55 68.60 2.03 47.33 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.23 -13.01 10.70 84.03 0.90 -12.11 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.65 -32.07 3.70 -716.09 -2.65 -34.72 16 10 C 0.13 4.64 8.51 86.49 0.74 5.38 16 11 C -0.12 -3.66 3.93 -10.14 -0.04 -3.70 16 12 C 0.14 3.74 5.51 86.38 0.48 4.22 16 13 N -0.71 -16.01 5.51 -466.10 -2.57 -18.58 16 14 C 0.57 13.59 7.78 86.75 0.67 14.27 16 15 O -0.57 -17.39 16.42 -3.92 -0.06 -17.45 16 16 C -0.20 -3.86 5.89 -20.00 -0.12 -3.98 16 17 C 0.01 0.19 9.71 22.71 0.22 0.41 16 18 C -0.18 -2.37 10.07 22.37 0.23 -2.15 16 19 C 0.31 5.83 8.41 84.77 0.71 6.54 16 20 F -0.11 -2.15 17.29 44.97 0.78 -1.38 16 21 N -0.54 -11.62 10.36 -195.73 -2.03 -13.65 16 22 C 0.18 3.23 10.71 85.02 0.91 4.14 16 23 C 0.16 7.24 7.08 86.44 0.61 7.85 16 24 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 27 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.75 7.88 -2.39 -0.02 1.73 16 30 H 0.41 7.60 6.53 -92.70 -0.61 6.99 16 31 H 0.17 2.25 7.73 -2.91 -0.02 2.22 16 32 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.19 2.61 6.42 -2.91 -0.02 2.59 16 34 H 0.01 0.59 7.92 -2.39 -0.02 0.57 16 35 H 0.05 2.25 7.17 -2.39 -0.02 2.23 16 Total: -1.00 -71.67 309.70 2.04 -69.63 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.52 Total: 7.57 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 5.78 Total: 17.54 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -7.00 Total: -123.25 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.06 Total: -17.45 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.78 Total: -1.38 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.67 2.04 -69.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031580005.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.234 kcal (2) G-P(sol) polarization free energy of solvation -71.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds