Wall clock time and date at job start Fri Apr 10 2020 14:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00136 * 2 1 4 4 H 1.48508 * 109.46831 * 270.00314 * 3 2 1 5 5 H 1.48503 * 109.46995 * 29.99838 * 3 2 1 6 6 H 1.48492 * 109.47433 * 150.00011 * 3 2 1 7 7 C 1.38812 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00024 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.47062 * 136.05652 * 359.94901 * 9 7 2 11 11 C 1.53499 * 87.98605 * 207.15863 * 10 9 7 12 12 C 1.47067 * 136.05579 * 180.02562 * 9 7 2 13 13 H 1.09000 * 113.46721 * 267.67924 * 12 9 7 14 14 C 1.52996 * 113.47009 * 38.06205 * 12 9 7 15 15 N 1.46497 * 109.47183 * 285.49572 * 14 12 9 16 16 C 1.34774 * 120.00271 * 179.97438 * 15 14 12 17 17 O 1.21566 * 119.99891 * 0.02562 * 16 15 14 18 18 C 1.47727 * 120.00476 * 179.97438 * 16 15 14 19 19 C 1.40154 * 120.53525 * 179.97438 * 18 16 15 20 20 C 1.38149 * 118.32395 * 180.02562 * 19 18 16 21 21 C 1.38755 * 119.28604 * 359.97438 * 20 19 18 22 22 F 1.35101 * 119.49054 * 179.97438 * 21 20 19 23 23 N 1.32144 * 121.01423 * 0.02562 * 21 20 19 24 24 C 1.31695 * 121.84187 * 359.97438 * 23 21 20 25 25 H 0.96994 * 119.99691 * 359.97438 * 1 2 3 26 26 H 1.09000 * 113.46711 * 321.93604 * 10 9 7 27 27 H 1.08994 * 113.46765 * 92.38010 * 10 9 7 28 28 H 1.08998 * 114.20499 * 220.35046 * 11 10 9 29 29 H 1.08997 * 114.20527 * 87.51774 * 11 10 9 30 30 H 1.08996 * 109.47442 * 165.49756 * 14 12 9 31 31 H 1.09005 * 109.47288 * 45.49243 * 14 12 9 32 32 H 0.96999 * 120.00401 * 0.02562 * 15 14 12 33 33 H 1.08001 * 120.83377 * 0.02562 * 19 18 16 34 34 H 1.08006 * 120.35876 * 180.27054 * 20 19 18 35 35 H 1.07996 * 119.69964 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.0877 -2.7948 0.0008 11 6 0.3425 -4.0921 0.6997 12 6 1.6800 -3.8154 -0.0005 13 1 1.7453 -4.2464 -0.9996 14 6 2.8992 -4.1405 0.8647 15 7 4.1155 -3.6901 0.1835 16 6 5.3189 -3.8724 0.7623 17 8 5.3951 -4.4110 1.8495 18 6 6.5454 -3.4188 0.0752 19 6 7.8025 -3.6022 0.6672 20 6 8.9193 -3.1601 -0.0154 21 6 8.7622 -2.5547 -1.2540 22 9 9.8514 -2.1203 -1.9249 23 7 7.5635 -2.3955 -1.7869 24 6 6.4709 -2.8009 -1.1734 25 1 -0.4849 0.8400 0.0004 26 1 -0.7218 -2.1588 0.6184 27 1 -0.4944 -2.9541 -0.9977 28 1 -0.1727 -4.9839 0.3430 29 1 0.3844 -4.0214 1.7866 30 1 2.9520 -5.2168 1.0285 31 1 2.8103 -3.6308 1.8241 32 1 4.0548 -3.2601 -0.6838 33 1 7.8958 -4.0773 1.6326 34 1 9.9044 -3.2886 0.4082 35 1 5.5087 -2.6537 -1.6411 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038121424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:20 Heat of formation + Delta-G solvation = 20.388056 kcal Electronic energy + Delta-G solvation = -21120.940455 eV Core-core repulsion = 17649.894078 eV Total energy + Delta-G solvation = -3471.046376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.30254 -40.66416 -39.04772 -38.05325 -34.35657 -32.95790 -32.30882 -31.45059 -28.14271 -27.67337 -24.57769 -24.04268 -23.53119 -22.00849 -20.68315 -19.35690 -18.50664 -17.82706 -17.52887 -16.61261 -16.35212 -15.52954 -15.41151 -15.14152 -14.71008 -14.54044 -14.01745 -13.84884 -13.48217 -13.41258 -13.20090 -13.08278 -12.87366 -11.98274 -11.59531 -11.17893 -11.04945 -10.80884 -10.64934 -10.35358 -10.34356 -10.00300 -9.89236 -9.74471 -9.36147 -9.29665 -8.86859 -8.71452 -6.96515 -5.83013 -3.16160 0.27268 0.79507 2.72975 3.21070 3.26483 3.34828 3.40400 3.41792 3.57361 4.14760 4.37371 4.45199 4.51229 4.74419 5.03781 5.13482 5.24550 5.34976 5.49444 5.55148 5.61970 5.75673 5.84028 6.01005 6.20196 6.25275 6.33675 6.52939 6.60872 6.73582 7.16192 7.25980 7.32959 7.51821 7.66787 7.91170 8.29855 8.96058 9.64077 10.56096 11.33961 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.005255 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.677959 B = 5327.477226 C = 6584.110179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.906 3.094 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.218 4.218 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.160 4.160 12 C 0.126 3.874 13 H 0.050 0.950 14 C 0.121 3.879 15 N -0.704 5.704 16 C 0.561 3.439 17 O -0.543 6.543 18 C -0.192 4.192 19 C 0.009 3.991 20 C -0.202 4.202 21 C 0.324 3.676 22 F -0.109 7.109 23 N -0.514 5.514 24 C 0.176 3.824 25 H 0.254 0.746 26 H 0.072 0.928 27 H 0.026 0.974 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.403 0.597 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.188 -9.130 -0.809 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.003 4.003 15 N -0.354 5.354 16 C 0.346 3.654 17 O -0.422 6.422 18 C -0.197 4.197 19 C -0.017 4.017 20 C -0.223 4.223 21 C 0.171 3.829 22 F -0.088 7.088 23 N -0.228 5.228 24 C 0.018 3.982 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.238 0.762 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 12.228 -8.708 -0.862 15.036 hybrid contribution 0.725 1.016 -0.023 1.248 sum 12.953 -7.692 -0.885 15.091 Atomic orbital electron populations 1.69820 1.04986 1.25388 1.56067 1.24764 0.95621 0.97424 1.02312 0.86213 0.78724 0.83738 0.77670 1.21488 1.21556 1.20655 1.18808 0.89919 0.81347 1.44424 0.90286 1.45676 1.02646 0.98486 1.85941 1.22032 0.88677 0.90185 0.96551 1.23657 0.96757 0.99107 1.00405 1.22440 0.91985 0.87892 0.95910 0.93312 1.21907 0.82647 0.98452 0.97324 1.45911 1.05896 1.60198 1.23374 1.17811 0.83007 0.79410 0.85188 1.90764 1.86912 1.43964 1.20517 1.21175 0.95622 1.05284 0.97624 1.21633 0.89612 0.91335 0.99124 1.21818 1.01720 1.03672 0.95055 1.18427 0.82843 0.93306 0.88345 1.91643 1.49798 1.86920 1.80476 1.67035 0.97889 1.20830 1.37067 1.22863 0.96004 0.89237 0.90131 0.93599 0.90958 0.95667 0.92269 0.90152 0.91862 0.90703 0.76165 0.82318 0.82762 0.80904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.33 11.51 55.49 0.64 -25.69 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.22 -5.62 10.55 -15.06 -0.16 -5.78 16 8 H 0.08 1.94 7.50 -52.49 -0.39 1.54 16 9 N -0.60 -13.99 3.65 -177.00 -0.65 -14.64 16 10 C 0.15 3.32 7.39 -8.50 -0.06 3.26 16 11 C -0.16 -2.76 8.03 -26.22 -0.21 -2.97 16 12 C 0.13 2.26 4.10 -72.40 -0.30 1.96 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 14 C 0.12 2.02 5.52 -4.05 -0.02 2.00 16 15 N -0.70 -11.00 5.29 -61.29 -0.32 -11.32 16 16 C 0.56 8.78 7.78 -12.38 -0.10 8.68 16 17 O -0.54 -9.95 16.42 5.31 0.09 -9.86 16 18 C -0.19 -2.51 5.89 -104.83 -0.62 -3.12 16 19 C 0.01 0.10 9.71 -38.90 -0.38 -0.28 16 20 C -0.20 -1.97 10.07 -39.42 -0.40 -2.36 16 21 C 0.32 3.93 8.41 -17.23 -0.14 3.78 16 22 F -0.11 -1.31 17.29 2.25 0.04 -1.27 16 23 N -0.51 -7.05 10.36 -13.22 -0.14 -7.19 16 24 C 0.18 2.25 10.71 -17.14 -0.18 2.06 16 25 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.40 5.88 6.43 -40.82 -0.26 5.62 16 33 H 0.16 1.55 7.73 -52.49 -0.41 1.15 16 34 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.17 1.96 6.42 -52.49 -0.34 1.62 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -31.46 309.45 -7.23 -38.69 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.86 Total: 2.93 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -2.66 Total: 7.03 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.47 Total: -58.84 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.46 -7.23 -38.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038121424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.082 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds