Wall clock time and date at job start Fri Apr 10 2020 14:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47193 * 269.99983 * 3 2 1 5 5 H 1.48501 * 109.47214 * 30.00046 * 3 2 1 6 6 H 1.48498 * 109.47027 * 149.99512 * 3 2 1 7 7 C 1.38808 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99748 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99752 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46630 * 179.97438 * 10 9 7 12 12 C 1.30996 * 119.99564 * 125.00397 * 11 10 9 13 13 C 1.50706 * 119.99874 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.46895 * 124.99444 * 13 12 11 15 15 C 1.34777 * 119.99800 * 179.97438 * 14 13 12 16 16 O 1.21572 * 119.99920 * 0.02562 * 15 14 13 17 17 C 1.47728 * 120.00164 * 180.02562 * 15 14 13 18 18 C 1.40153 * 120.52843 * 180.02562 * 17 15 14 19 19 C 1.38165 * 118.31720 * 179.97438 * 18 17 15 20 20 C 1.38746 * 119.28586 * 359.97438 * 19 18 17 21 21 F 1.35102 * 119.49034 * 180.02562 * 20 19 18 22 22 N 1.32145 * 121.01564 * 359.97438 * 20 19 18 23 23 C 1.31689 * 121.84452 * 0.02562 * 22 20 19 24 24 H 0.97000 * 120.00302 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99878 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47010 * 59.99895 * 10 9 7 27 27 H 1.08997 * 109.47075 * 299.99562 * 10 9 7 28 28 H 1.07996 * 120.00043 * 304.99809 * 11 10 9 29 29 H 1.07996 * 120.00393 * 359.97438 * 12 11 10 30 30 H 1.08998 * 109.46957 * 4.99756 * 13 12 11 31 31 H 1.08996 * 109.46931 * 245.00158 * 13 12 11 32 32 H 0.96998 * 120.00526 * 0.02562 * 14 13 12 33 33 H 1.07995 * 120.84391 * 0.25059 * 18 17 15 34 34 H 1.07998 * 120.35200 * 179.97438 * 19 18 17 35 35 H 1.07993 * 119.70110 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0786 -4.8023 0.0012 12 6 1.1473 -5.7231 -0.9279 13 6 0.1683 -6.8689 -0.9270 14 7 -0.5090 -6.9335 -2.2245 15 6 -1.4336 -7.8866 -2.4552 16 8 -1.7059 -8.6923 -1.5866 17 6 -2.1161 -7.9521 -3.7637 18 6 -3.0797 -8.9382 -4.0154 19 6 -3.6900 -8.9570 -5.2549 20 6 -3.3331 -8.0076 -6.2016 21 9 -3.9276 -8.0218 -7.4147 22 7 -2.4213 -7.0891 -5.9346 23 6 -1.8133 -7.0321 -4.7679 24 1 -0.4850 0.8400 -0.0004 25 1 0.3555 -2.3881 0.0005 26 1 2.6847 -3.7145 0.8905 27 1 2.6846 -3.7146 -0.8895 28 1 0.3203 -4.8639 0.7676 29 1 1.9054 -5.6613 -1.6946 30 1 -0.5694 -6.7158 -0.1394 31 1 0.7018 -7.8025 -0.7486 32 1 -0.2914 -6.2909 -2.9177 33 1 -3.3419 -9.6623 -3.2582 34 1 -4.4368 -9.7027 -5.4842 35 1 -1.0731 -6.2669 -4.5870 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668751185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:10 Heat of formation + Delta-G solvation = -10.428712 kcal Electronic energy + Delta-G solvation = -19656.982153 eV Core-core repulsion = 16184.599462 eV Total energy + Delta-G solvation = -3472.382692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.49982 -40.95506 -39.23631 -36.40173 -34.87887 -33.21333 -33.08906 -31.68894 -30.46532 -27.36630 -25.03444 -24.48049 -23.69273 -21.98232 -21.11784 -19.70037 -18.70991 -18.01455 -17.78713 -17.13067 -16.56158 -15.90435 -15.53476 -15.43155 -14.92489 -14.60588 -14.15722 -14.05446 -13.72731 -13.52478 -13.45816 -13.35516 -13.25906 -12.83099 -12.09952 -11.91425 -11.07785 -10.85618 -10.74673 -10.59826 -10.58128 -10.11571 -10.07289 -9.84481 -9.62169 -9.37873 -9.06785 -8.78935 -6.99030 -5.81498 -3.11409 0.00560 0.55741 2.15438 2.40590 2.98593 3.07828 3.26364 3.41045 3.46220 3.47998 3.90035 4.18580 4.25088 4.45007 4.56211 4.78718 4.85587 5.03866 5.16914 5.32314 5.43916 5.50563 5.53661 5.71210 5.92228 5.96015 6.07393 6.13179 6.41178 6.51508 6.82056 7.01759 7.07201 7.21637 7.64909 7.87515 8.36728 9.48153 10.03766 10.38876 11.41141 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.002796 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.376170 B =10013.403762 C =11103.341316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.171 3.829 11 C -0.102 4.102 12 C -0.206 4.206 13 C 0.156 3.844 14 N -0.715 5.715 15 C 0.564 3.436 16 O -0.535 6.535 17 C -0.198 4.198 18 C 0.011 3.989 19 C -0.200 4.200 20 C 0.329 3.671 21 F -0.107 7.107 22 N -0.514 5.514 23 C 0.176 3.824 24 H 0.256 0.744 25 H 0.385 0.615 26 H 0.032 0.968 27 H 0.026 0.974 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.403 0.597 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 -20.121 -9.601 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.121 4.121 12 C -0.225 4.225 13 C 0.034 3.966 14 N -0.367 5.367 15 C 0.350 3.650 16 O -0.413 6.413 17 C -0.203 4.203 18 C -0.015 4.015 19 C -0.221 4.221 20 C 0.176 3.824 21 F -0.086 7.086 22 N -0.228 5.228 23 C 0.018 3.982 24 H 0.066 0.934 25 H 0.219 0.781 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.128 0.872 29 H 0.134 0.866 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.239 0.761 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.125 -19.967 -9.641 22.758 hybrid contribution -0.084 0.770 -0.042 0.776 sum -5.209 -19.197 -9.683 22.123 Atomic orbital electron populations 1.69664 1.05149 1.25798 1.57437 1.24768 0.95562 0.97787 1.02776 0.86161 0.78644 0.83632 0.77569 1.21626 1.21702 1.20699 1.19237 0.91076 0.83990 1.43143 0.91059 1.42295 1.05942 0.99550 1.89636 1.19838 0.92615 0.84567 0.98524 1.23366 0.98096 0.93825 0.96857 1.22677 1.01131 0.97046 1.01687 1.20383 0.93961 0.97952 0.84341 1.45984 1.40580 1.32545 1.17552 1.17840 0.79486 0.81268 0.86397 1.90801 1.64267 1.40531 1.45730 1.21080 1.02299 1.00311 0.96615 1.21651 0.89626 0.94710 0.95469 1.21859 1.04696 1.01661 0.93923 1.18441 0.90501 0.91937 0.81513 1.91662 1.80322 1.95326 1.41256 1.67040 1.09132 1.23452 1.23191 1.22824 0.94562 0.95182 0.85642 0.93414 0.78130 0.95080 0.95604 0.87189 0.86594 0.90817 0.90698 0.76106 0.82221 0.82567 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.19 5.59 -61.08 -0.34 -18.53 16 10 C 0.17 3.30 6.70 -5.19 -0.03 3.27 16 11 C -0.10 -1.55 9.24 -36.02 -0.33 -1.88 16 12 C -0.21 -2.54 9.24 -36.02 -0.33 -2.87 16 13 C 0.16 1.75 6.11 -5.19 -0.03 1.72 16 14 N -0.72 -7.28 5.50 -62.47 -0.34 -7.62 16 15 C 0.56 6.35 7.78 -12.38 -0.10 6.26 16 16 O -0.54 -7.68 16.42 5.30 0.09 -7.60 16 17 C -0.20 -1.84 5.89 -104.83 -0.62 -2.45 16 18 C 0.01 0.09 9.71 -38.89 -0.38 -0.29 16 19 C -0.20 -1.42 10.07 -39.42 -0.40 -1.82 16 20 C 0.33 3.12 8.41 -17.23 -0.14 2.98 16 21 F -0.11 -1.04 17.29 2.25 0.04 -1.00 16 22 N -0.51 -5.48 10.36 -13.22 -0.14 -5.62 16 23 C 0.18 1.58 10.71 -17.14 -0.18 1.39 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.39 10.09 7.66 -40.82 -0.31 9.78 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 28 H 0.11 1.64 7.84 -52.49 -0.41 1.23 16 29 H 0.12 1.34 7.84 -52.49 -0.41 0.92 16 30 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.40 3.31 6.52 -40.82 -0.27 3.05 16 33 H 0.16 1.09 7.73 -52.49 -0.41 0.68 16 34 H 0.16 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.17 1.14 6.42 -52.49 -0.34 0.80 16 LS Contribution 318.51 15.07 4.80 4.80 Total: -1.00 -33.14 318.51 -6.76 -39.90 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -3.77 Total: 6.84 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.79 Total: -1.05 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.10 Total: -59.00 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.09 Total: -7.60 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.14 -6.76 -39.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668751185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.468 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds