Wall clock time and date at job start Fri Apr 10 2020 14:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47193 * 269.99983 * 3 2 1 5 5 H 1.48501 * 109.47214 * 30.00046 * 3 2 1 6 6 H 1.48498 * 109.47027 * 149.99512 * 3 2 1 7 7 C 1.38808 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99748 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99752 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46630 * 179.97438 * 10 9 7 12 12 C 1.30996 * 119.99564 * 125.00397 * 11 10 9 13 13 C 1.50706 * 119.99874 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.46895 * 124.99444 * 13 12 11 15 15 C 1.34777 * 119.99800 * 179.97438 * 14 13 12 16 16 O 1.21572 * 119.99920 * 0.02562 * 15 14 13 17 17 C 1.47728 * 120.00164 * 180.02562 * 15 14 13 18 18 C 1.40153 * 120.52843 * 180.02562 * 17 15 14 19 19 C 1.38165 * 118.31720 * 179.97438 * 18 17 15 20 20 C 1.38746 * 119.28586 * 359.97438 * 19 18 17 21 21 F 1.35102 * 119.49034 * 180.02562 * 20 19 18 22 22 N 1.32145 * 121.01564 * 359.97438 * 20 19 18 23 23 C 1.31689 * 121.84452 * 0.02562 * 22 20 19 24 24 H 0.97000 * 120.00302 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99878 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47010 * 59.99895 * 10 9 7 27 27 H 1.08997 * 109.47075 * 299.99562 * 10 9 7 28 28 H 1.07996 * 120.00043 * 304.99809 * 11 10 9 29 29 H 1.07996 * 120.00393 * 359.97438 * 12 11 10 30 30 H 1.08998 * 109.46957 * 4.99756 * 13 12 11 31 31 H 1.08996 * 109.46931 * 245.00158 * 13 12 11 32 32 H 0.96998 * 120.00526 * 0.02562 * 14 13 12 33 33 H 1.07995 * 120.84391 * 0.25059 * 18 17 15 34 34 H 1.07998 * 120.35200 * 179.97438 * 19 18 17 35 35 H 1.07993 * 119.70110 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0786 -4.8023 0.0012 12 6 1.1473 -5.7231 -0.9279 13 6 0.1683 -6.8689 -0.9270 14 7 -0.5090 -6.9335 -2.2245 15 6 -1.4336 -7.8866 -2.4552 16 8 -1.7059 -8.6923 -1.5866 17 6 -2.1161 -7.9521 -3.7637 18 6 -3.0797 -8.9382 -4.0154 19 6 -3.6900 -8.9570 -5.2549 20 6 -3.3331 -8.0076 -6.2016 21 9 -3.9276 -8.0218 -7.4147 22 7 -2.4213 -7.0891 -5.9346 23 6 -1.8133 -7.0321 -4.7679 24 1 -0.4850 0.8400 -0.0004 25 1 0.3555 -2.3881 0.0005 26 1 2.6847 -3.7145 0.8905 27 1 2.6846 -3.7146 -0.8895 28 1 0.3203 -4.8639 0.7676 29 1 1.9054 -5.6613 -1.6946 30 1 -0.5694 -6.7158 -0.1394 31 1 0.7018 -7.8025 -0.7486 32 1 -0.2914 -6.2909 -2.9177 33 1 -3.3419 -9.6623 -3.2582 34 1 -4.4368 -9.7027 -5.4842 35 1 -1.0731 -6.2669 -4.5870 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668751185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:09 Heat of formation + Delta-G solvation = -33.921625 kcal Electronic energy + Delta-G solvation = -19658.000882 eV Core-core repulsion = 16184.599462 eV Total energy + Delta-G solvation = -3473.401421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.21239 -41.70969 -40.08124 -37.67669 -36.29533 -34.52955 -33.90088 -32.83420 -31.89473 -28.70568 -26.28895 -25.34039 -24.79927 -23.50944 -21.98401 -20.85516 -19.46799 -19.13875 -18.76346 -18.51604 -17.28175 -16.87390 -16.70732 -16.43367 -16.12685 -15.69876 -15.38060 -15.16718 -15.03580 -14.73516 -14.44239 -14.25335 -14.05010 -14.01962 -13.47832 -13.30371 -12.86575 -12.74326 -12.18554 -11.98498 -11.78940 -11.50050 -11.26042 -11.03099 -10.84087 -10.46113 -10.23997 -9.95833 -9.00489 -7.95832 -5.25419 -0.70160 -0.06567 1.05265 1.48988 1.50327 1.58919 1.59624 2.18582 2.33545 2.53784 2.57510 3.26036 3.38338 3.51467 3.63183 3.72193 3.80689 4.11924 4.13998 4.25442 4.45513 4.49258 4.66819 4.71556 4.73658 4.86806 4.94499 5.03260 5.22864 5.34311 5.48369 5.67813 5.85657 6.26584 6.33000 6.39514 7.02445 7.32798 8.07419 8.30781 9.27597 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.002796 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.376170 B =10013.403762 C =11103.341316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.745 5.745 10 C 0.172 3.828 11 C -0.131 4.131 12 C -0.163 4.163 13 C 0.158 3.842 14 N -0.709 5.709 15 C 0.567 3.433 16 O -0.569 6.569 17 C -0.204 4.204 18 C 0.012 3.988 19 C -0.183 4.183 20 C 0.314 3.686 21 F -0.112 7.112 22 N -0.542 5.542 23 C 0.177 3.823 24 H 0.252 0.748 25 H 0.375 0.625 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.414 0.586 33 H 0.172 0.828 34 H 0.189 0.811 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 -21.156 -10.310 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.387 5.387 10 C 0.046 3.954 11 C -0.150 4.150 12 C -0.182 4.182 13 C 0.035 3.965 14 N -0.361 5.361 15 C 0.355 3.645 16 O -0.449 6.449 17 C -0.210 4.210 18 C -0.013 4.013 19 C -0.203 4.203 20 C 0.161 3.839 21 F -0.091 7.091 22 N -0.257 5.257 23 C 0.018 3.982 24 H 0.060 0.940 25 H 0.206 0.794 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.127 0.873 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.251 0.749 33 H 0.190 0.810 34 H 0.206 0.794 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.539 -21.023 -10.368 23.876 hybrid contribution -0.230 0.957 0.134 0.993 sum -4.770 -20.066 -10.234 23.025 Atomic orbital electron populations 1.69819 1.06659 1.26161 1.59352 1.25599 0.96424 1.01207 1.03559 0.85120 0.77704 0.79300 0.77515 1.21242 1.22266 1.19339 1.19668 0.91621 0.85234 1.41435 0.90398 1.42538 1.05723 1.00945 1.89539 1.19929 0.93226 0.83703 0.98513 1.23015 0.98752 0.94142 0.99091 1.22784 1.00141 0.95442 0.99855 1.20309 0.93685 0.97799 0.84704 1.45882 1.40201 1.32592 1.17388 1.18046 0.79176 0.80687 0.86637 1.90786 1.65385 1.41859 1.46904 1.20983 1.02981 1.01269 0.95739 1.21873 0.89033 0.94434 0.96007 1.22094 1.04391 1.01179 0.92659 1.18738 0.90727 0.92552 0.81840 1.91646 1.80409 1.95396 1.41685 1.67011 1.10135 1.24531 1.24024 1.23048 0.94645 0.95424 0.85050 0.93963 0.79371 0.95266 0.94805 0.87341 0.85018 0.91651 0.89531 0.74870 0.81024 0.79411 0.79239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.94 13.06 21.65 0.28 -58.65 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 3 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -37.20 5.59 -347.16 -1.94 -39.15 16 10 C 0.17 6.50 6.70 85.63 0.57 7.07 16 11 C -0.13 -3.84 9.24 25.65 0.24 -3.61 16 12 C -0.16 -3.67 9.24 25.65 0.24 -3.43 16 13 C 0.16 3.23 6.11 85.64 0.52 3.76 16 14 N -0.71 -13.11 5.50 -469.82 -2.58 -15.69 16 15 C 0.57 11.95 7.78 86.75 0.67 12.63 16 16 O -0.57 -15.68 16.42 -3.94 -0.06 -15.75 16 17 C -0.20 -3.49 5.89 -20.00 -0.12 -3.60 16 18 C 0.01 0.17 9.71 22.72 0.22 0.39 16 19 C -0.18 -2.19 10.07 22.37 0.23 -1.96 16 20 C 0.31 5.55 8.41 84.77 0.71 6.26 16 21 F -0.11 -2.09 17.29 44.97 0.78 -1.31 16 22 N -0.54 -11.03 10.36 -195.74 -2.03 -13.06 16 23 C 0.18 2.92 10.71 85.02 0.91 3.83 16 24 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.37 19.95 7.66 -92.71 -0.71 19.24 16 26 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.03 1.23 7.79 -2.39 -0.02 1.21 16 28 H 0.11 3.22 7.84 -2.91 -0.02 3.20 16 29 H 0.13 2.61 7.84 -2.91 -0.02 2.59 16 30 H 0.07 1.51 7.79 -2.39 -0.02 1.49 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.41 5.90 6.52 -92.71 -0.60 5.30 16 33 H 0.17 1.98 7.73 -2.91 -0.02 1.96 16 34 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.19 2.20 6.42 -2.91 -0.02 2.18 16 Total: -1.00 -70.92 318.51 1.80 -69.13 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.17 Total: 22.25 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.50 Total: 4.67 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -6.27 Total: -126.55 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.06 Total: -15.75 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.78 Total: -1.31 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.92 1.80 -69.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668751185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.204 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds