Wall clock time and date at job start Fri Apr 10 2020 14:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00247 * 2 1 4 4 H 1.48494 * 109.47416 * 239.99987 * 3 2 1 5 5 H 1.48498 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47348 * 119.99719 * 3 2 1 7 7 C 1.37881 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00531 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99410 * 0.02562 * 7 2 1 10 10 C 1.50709 * 109.46959 * 180.02562 * 9 7 2 11 11 C 1.38270 * 119.98624 * 89.99754 * 10 9 7 12 12 C 1.38225 * 120.04716 * 179.97438 * 11 10 9 13 13 C 1.38214 * 120.02588 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.01059 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.47237 * 105.00108 * 14 13 12 16 16 C 1.47014 * 110.99561 * 293.63425 * 15 14 13 17 17 C 1.53097 * 109.25690 * 177.60947 * 16 15 14 18 18 O 1.43010 * 109.26085 * 56.84353 * 17 16 15 19 19 C 1.43018 * 113.74034 * 301.33559 * 18 17 16 20 20 C 1.47008 * 110.99917 * 170.00042 * 15 14 13 21 21 C 1.38440 * 119.97860 * 0.02562 * 13 12 11 22 22 F 1.35101 * 120.02694 * 179.97438 * 21 13 12 23 23 C 1.38172 * 119.98737 * 269.99760 * 10 9 7 24 24 H 0.96998 * 120.00387 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47985 * 59.99935 * 9 7 2 26 26 H 1.09001 * 109.47084 * 299.99543 * 9 7 2 27 27 H 1.07993 * 119.97439 * 0.27580 * 11 10 9 28 28 H 1.07999 * 119.98109 * 179.97438 * 12 11 10 29 29 H 1.08998 * 109.46955 * 224.99650 * 14 13 12 30 30 H 1.09002 * 109.46935 * 344.99691 * 14 13 12 31 31 H 1.09000 * 109.50937 * 297.54284 * 16 15 14 32 32 H 1.09004 * 109.50733 * 57.67279 * 16 15 14 33 33 H 1.09008 * 109.50192 * 296.91247 * 17 16 15 34 34 H 1.09004 * 109.54631 * 176.80592 * 17 16 15 35 35 H 1.08992 * 109.50446 * 298.72830 * 19 18 17 36 36 H 1.09007 * 109.54207 * 178.62382 * 19 18 17 37 37 H 1.09001 * 109.50860 * 302.32123 * 20 15 14 38 38 H 1.09001 * 109.50785 * 62.45877 * 20 15 14 39 39 H 1.08010 * 120.00924 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6785 -4.1704 1.1963 12 6 3.5763 -5.2214 1.1980 13 6 4.0274 -5.7476 0.0022 14 6 5.0067 -6.8931 0.0044 15 7 4.3086 -8.1348 -0.3545 16 6 3.3373 -8.5117 0.6827 17 6 2.5923 -9.7744 0.2419 18 8 3.5390 -10.8146 -0.0169 19 6 4.4999 -10.4814 -1.0225 20 6 5.2642 -9.2259 -0.5944 21 6 3.5802 -5.2213 -1.1977 22 9 4.0209 -5.7345 -2.3671 23 6 2.6799 -4.1690 -1.1981 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5564 -0.8919 26 1 0.6240 -2.5574 0.8881 27 1 2.3231 -3.7628 2.1311 28 1 3.9259 -5.6310 2.1341 29 1 5.7962 -6.6975 -0.7211 30 1 5.4434 -6.9957 0.9978 31 1 3.8611 -8.7062 1.6186 32 1 2.6243 -7.6997 0.8260 33 1 2.0252 -9.5644 -0.6651 34 1 1.9111 -10.0905 1.0320 35 1 3.9883 -10.2921 -1.9661 36 1 5.1990 -11.3084 -1.1470 37 1 5.9578 -8.9353 -1.3835 38 1 5.8188 -9.4319 0.3210 39 1 2.3300 -3.7579 -2.1335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260646176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:03 Heat of formation + Delta-G solvation = -88.873005 kcal Electronic energy + Delta-G solvation = -21515.810323 eV Core-core repulsion = 18143.566375 eV Total energy + Delta-G solvation = -3372.243948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.75895 -40.76014 -39.86317 -37.01738 -35.36905 -33.39228 -32.10160 -31.39376 -30.39599 -28.12033 -25.88488 -24.99151 -24.01704 -23.63195 -21.75714 -21.30514 -18.55287 -17.90886 -17.60831 -17.41382 -17.11819 -16.72893 -16.50354 -16.37021 -16.00514 -15.83351 -15.36480 -14.89089 -14.86222 -14.48567 -14.30787 -14.01397 -13.54774 -13.29690 -13.08440 -13.00023 -12.69631 -12.57365 -12.44475 -12.33943 -12.19800 -12.07966 -11.58190 -11.50256 -11.39400 -10.68711 -10.61643 -9.75159 -9.43752 -9.29992 -8.22097 -6.35332 0.31587 0.36438 1.40408 1.42553 1.50836 2.37731 2.61687 2.89795 3.04261 3.09423 3.37976 3.66076 3.83995 3.96756 4.03105 4.16820 4.19553 4.22226 4.31904 4.36661 4.51539 4.58423 4.63230 4.64268 4.73968 4.83085 4.90194 4.99931 5.03155 5.10426 5.22219 5.32396 5.37227 5.44550 5.71708 5.91633 5.94277 5.97762 6.04975 6.16815 6.17734 6.76774 7.33422 8.87347 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036799 B = 0.003559 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.699718 B = 7865.183461 C = 8055.078860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.056 0.944 9 C 0.055 3.945 10 C -0.029 4.029 11 C -0.138 4.138 12 C -0.072 4.072 13 C -0.135 4.135 14 C 0.109 3.891 15 N -0.548 5.548 16 C 0.020 3.980 17 C 0.064 3.936 18 O -0.402 6.402 19 C 0.061 3.939 20 C 0.020 3.980 21 C 0.113 3.887 22 F -0.142 7.142 23 C -0.176 4.176 24 H 0.266 0.734 25 H 0.003 0.997 26 H 0.014 0.986 27 H 0.129 0.871 28 H 0.158 0.842 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.053 0.947 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.603 -18.958 1.755 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.018 3.982 10 C -0.029 4.029 11 C -0.156 4.156 12 C -0.090 4.090 13 C -0.137 4.137 14 C -0.018 4.018 15 N -0.274 5.274 16 C -0.108 4.108 17 C -0.013 4.013 18 O -0.321 6.321 19 C -0.015 4.015 20 C -0.107 4.107 21 C 0.093 3.907 22 F -0.121 7.121 23 C -0.195 4.195 24 H 0.075 0.925 25 H 0.021 0.979 26 H 0.032 0.968 27 H 0.147 0.853 28 H 0.176 0.824 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.221 -18.983 1.362 21.603 hybrid contribution 0.299 1.412 0.056 1.444 sum 10.520 -17.572 1.418 20.529 Atomic orbital electron populations 1.70058 1.07642 1.28111 1.50995 1.25900 0.95750 1.03057 0.94483 0.85506 0.78315 0.78123 0.79179 1.19523 1.20606 1.19002 1.21324 0.93148 0.91098 1.51394 0.92585 1.18140 0.92852 0.90836 0.96371 1.20222 0.95695 0.94187 0.92786 1.21200 0.99241 0.97542 0.97630 1.21107 0.95371 0.94938 0.97626 1.19760 1.02473 1.00089 0.91344 1.20842 0.93438 0.86117 1.01357 1.62163 1.17432 1.03337 1.44448 1.22777 0.96276 0.98607 0.93165 1.22725 0.90913 0.86311 1.01362 1.87943 1.44157 1.40691 1.59279 1.22802 0.91261 0.96897 0.90571 1.22822 0.94723 0.91393 1.01798 1.17498 0.97084 0.94660 0.81448 1.91430 1.87983 1.86133 1.46552 1.21006 1.00853 0.98281 0.99311 0.92486 0.97858 0.96810 0.85283 0.82435 0.89554 0.91602 0.93211 0.90152 0.93137 0.86835 0.92847 0.86253 0.88596 0.93344 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.28 21.45 0.28 -54.92 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.53 -29.85 9.09 25.60 0.23 -29.62 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.05 2.88 5.10 29.10 0.15 3.02 16 10 C -0.03 -1.22 5.07 -19.87 -0.10 -1.32 16 11 C -0.14 -4.88 9.70 22.27 0.22 -4.67 16 12 C -0.07 -2.00 9.06 22.26 0.20 -1.80 16 13 C -0.14 -3.87 4.44 -19.82 -0.09 -3.96 16 14 C 0.11 2.42 4.78 85.56 0.41 2.83 16 15 N -0.55 -12.03 4.72 -899.77 -4.24 -16.28 16 16 C 0.02 0.41 5.45 86.31 0.47 0.88 16 17 C 0.06 1.25 7.01 72.01 0.50 1.75 16 18 O -0.40 -8.45 10.83 -148.98 -1.61 -10.06 16 19 C 0.06 1.03 7.01 72.01 0.50 1.54 16 20 C 0.02 0.35 5.64 86.32 0.49 0.83 16 21 C 0.11 3.91 7.25 22.37 0.16 4.07 16 22 F -0.14 -4.88 16.76 44.97 0.75 -4.13 16 23 C -0.18 -7.08 9.68 22.31 0.22 -6.87 16 24 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 25 H 0.00 0.18 8.09 -2.39 -0.02 0.16 16 26 H 0.01 0.75 8.08 -2.39 -0.02 0.73 16 27 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 28 H 0.16 3.18 8.00 -2.91 -0.02 3.15 16 29 H 0.09 1.88 7.98 -2.39 -0.02 1.86 16 30 H 0.07 1.20 7.93 -2.39 -0.02 1.18 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.84 6.77 -2.38 -0.02 1.82 16 33 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -64.34 327.13 2.06 -62.28 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.03 Total: 9.89 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 3.83 Total: -32.46 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -3.96 Total: -71.20 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.61 Total: -10.06 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.75 Total: -4.13 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -64.34 2.06 -62.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.596 kcal (2) G-P(sol) polarization free energy of solvation -64.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds