Wall clock time and date at job start Fri Apr 10 2020 14:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99695 * 2 1 4 4 H 1.48504 * 109.47324 * 270.00016 * 3 2 1 5 5 H 1.48498 * 109.47325 * 29.99959 * 3 2 1 6 6 H 1.48495 * 109.47183 * 150.00079 * 3 2 1 7 7 C 1.37873 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47285 * 179.97438 * 9 7 2 11 11 C 1.38329 * 119.87761 * 89.99684 * 10 9 7 12 12 C 1.38014 * 120.11878 * 179.97438 * 11 10 9 13 13 C 1.39333 * 119.88362 * 0.02562 * 12 11 10 14 14 C 1.48396 * 120.12471 * 180.02562 * 13 12 11 15 15 C 1.39758 * 120.53578 * 179.72520 * 14 13 12 16 16 C 1.38416 * 118.31389 * 179.73715 * 15 14 13 17 17 C 1.38315 * 119.27958 * 0.53945 * 16 15 14 18 18 C 1.50698 * 119.48658 * 179.74755 * 17 16 15 19 19 C 1.53000 * 117.49919 * 343.71849 * 18 17 16 20 20 C 1.53007 * 117.49494 * 275.06196 * 18 17 16 21 21 N 1.31896 * 121.02719 * 359.72291 * 17 16 15 22 22 C 1.31746 * 121.85013 * 359.97438 * 21 17 16 23 23 C 1.39340 * 119.75441 * 0.28172 * 13 12 11 24 24 C 1.38023 * 119.87643 * 359.41755 * 23 13 12 25 25 H 0.96996 * 120.00376 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47013 * 59.99799 * 9 7 2 27 27 H 1.08996 * 109.47115 * 300.00090 * 9 7 2 28 28 H 1.07991 * 119.93766 * 359.97438 * 11 10 9 29 29 H 1.08006 * 120.06146 * 180.02562 * 12 11 10 30 30 H 1.08002 * 120.84742 * 359.97438 * 15 14 13 31 31 H 1.07998 * 120.36215 * 180.26010 * 16 15 14 32 32 H 1.08994 * 115.55352 * 129.39729 * 18 17 16 33 33 H 1.09001 * 117.49645 * 0.02562 * 19 18 17 34 34 H 1.09001 * 117.49840 * 145.02297 * 19 18 17 35 35 H 1.09004 * 117.49347 * 214.97746 * 20 18 17 36 36 H 1.08992 * 117.50033 * 359.97438 * 20 18 17 37 37 H 1.07996 * 119.69990 * 180.02562 * 22 21 17 38 38 H 1.08005 * 120.06244 * 179.72306 * 23 13 12 39 39 H 1.07998 * 119.93915 * 180.30645 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.6783 -4.1682 1.2000 12 6 3.5747 -5.2175 1.2058 13 6 4.0291 -5.7491 0.0006 14 6 4.9926 -6.8777 0.0006 15 6 5.4496 -7.4212 -1.2031 16 6 6.3520 -8.4694 -1.1495 17 6 6.7601 -8.9483 0.0823 18 6 7.7381 -10.0931 0.1461 19 6 7.9437 -10.9183 -1.1258 20 6 7.1719 -11.5117 0.0555 21 7 6.3070 -8.4184 1.2019 22 6 5.4520 -7.4161 1.2004 23 6 3.5796 -5.2135 -1.2046 24 6 2.6783 -4.1682 -1.1988 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5570 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 2.3258 -3.7552 2.1335 29 1 3.9235 -5.6260 2.1428 30 1 5.1103 -7.0308 -2.1512 31 1 6.7299 -8.9115 -2.0595 32 1 8.6034 -9.9369 0.7901 33 1 7.3720 -10.6329 -2.0088 34 1 8.9444 -11.3052 -1.3184 35 1 7.6653 -12.2887 0.6395 36 1 6.0922 -11.6169 -0.0499 37 1 5.1039 -7.0083 2.1379 38 1 3.9320 -5.6187 -2.1417 39 1 2.3254 -3.7555 -2.1323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238854220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:54 Heat of formation + Delta-G solvation = 55.440881 kcal Electronic energy + Delta-G solvation = -19544.832600 eV Core-core repulsion = 16609.615797 eV Total energy + Delta-G solvation = -2935.216803 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51841 -39.98707 -37.87354 -35.67639 -34.22951 -33.07381 -31.79155 -31.32076 -28.59634 -25.96491 -25.18026 -24.32342 -23.28947 -22.60596 -22.21073 -21.23825 -18.56577 -18.33252 -17.49017 -17.12952 -16.78277 -16.21231 -15.86228 -15.54275 -15.30965 -14.89603 -14.69469 -14.57811 -14.48786 -13.81936 -13.74955 -13.32589 -13.27622 -12.95776 -12.68089 -12.55906 -12.40710 -12.21434 -11.80691 -11.75601 -11.49967 -11.43613 -11.34821 -10.89604 -10.62299 -10.39553 -10.20352 -9.79726 -8.86237 -8.20943 -6.35458 -0.37207 0.28549 0.56915 0.93420 1.39113 1.39683 1.51353 2.37922 2.61727 2.88097 3.08826 3.13364 3.26887 3.65504 3.72548 3.89227 3.92355 3.98981 4.11881 4.17357 4.23081 4.24480 4.35711 4.55114 4.62423 4.70992 4.77094 4.85041 4.90359 5.05288 5.09070 5.11930 5.20134 5.26565 5.27033 5.33525 5.37746 5.55387 5.65839 5.71825 5.75419 6.04679 6.07527 6.21255 6.77218 7.00375 7.33248 8.87218 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.043176 B = 0.002787 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.357957 B =10044.986185 C =10069.174710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.054 3.946 10 C -0.057 4.057 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.074 4.074 14 C -0.094 4.094 15 C -0.073 4.073 16 C -0.162 4.162 17 C 0.136 3.864 18 C -0.127 4.127 19 C -0.155 4.155 20 C -0.164 4.164 21 N -0.500 5.500 22 C 0.096 3.904 23 C -0.100 4.100 24 C -0.133 4.133 25 H 0.266 0.734 26 H 0.005 0.995 27 H 0.004 0.996 28 H 0.118 0.882 29 H 0.145 0.855 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.166 0.834 38 H 0.149 0.851 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.126 -21.100 -3.122 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.017 3.983 10 C -0.057 4.057 11 C -0.152 4.152 12 C -0.121 4.121 13 C -0.075 4.075 14 C -0.096 4.096 15 C -0.098 4.098 16 C -0.181 4.181 17 C -0.001 4.001 18 C -0.146 4.146 19 C -0.192 4.192 20 C -0.202 4.202 21 N -0.208 5.208 22 C -0.061 4.061 23 C -0.118 4.118 24 C -0.151 4.151 25 H 0.075 0.925 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.136 0.864 29 H 0.162 0.838 30 H 0.175 0.825 31 H 0.183 0.817 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.183 0.817 38 H 0.167 0.833 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.266 -21.329 -2.315 26.331 hybrid contribution -0.618 1.763 -0.483 1.929 sum 14.648 -19.567 -2.798 24.602 Atomic orbital electron populations 1.70072 1.07637 1.27993 1.51231 1.25921 0.95774 1.03097 0.94584 0.85446 0.78575 0.78449 0.78605 1.19611 1.20458 1.19112 1.21352 0.93037 0.91179 1.51027 0.92795 1.18142 0.92964 0.91182 0.96018 1.20533 0.96467 0.94683 0.93987 1.21059 0.99059 0.97381 0.97655 1.21331 0.96677 0.95839 0.98228 1.18610 0.98603 0.96631 0.93681 1.19804 0.98054 0.96492 0.95232 1.21975 0.94729 0.94588 0.98539 1.22169 0.98551 0.97656 0.99743 1.20835 0.95158 0.95445 0.88632 1.20816 0.99422 0.89688 1.04643 1.23235 1.03086 1.01137 0.91731 1.23037 1.00334 0.94235 1.02561 1.67375 1.11142 1.10324 1.31980 1.23044 0.93004 0.91913 0.98153 1.21339 0.96518 0.95738 0.98174 1.21072 0.99007 0.97453 0.97586 0.92523 0.97641 0.97733 0.86416 0.83767 0.82497 0.81741 0.86280 0.87414 0.86217 0.86938 0.89547 0.81661 0.83345 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.53 -30.13 9.09 25.60 0.23 -29.89 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.05 2.88 5.10 29.10 0.15 3.02 16 10 C -0.06 -2.48 5.07 -19.83 -0.10 -2.58 16 11 C -0.13 -5.15 9.68 22.24 0.22 -4.93 16 12 C -0.10 -3.25 9.44 22.48 0.21 -3.03 16 13 C -0.07 -2.22 5.88 -20.04 -0.12 -2.33 16 14 C -0.09 -2.40 5.89 -19.95 -0.12 -2.52 16 15 C -0.07 -1.53 9.54 22.68 0.22 -1.31 16 16 C -0.16 -2.98 9.35 22.33 0.21 -2.77 16 17 C 0.14 2.94 6.46 42.57 0.27 3.22 16 18 C -0.13 -2.03 6.21 -11.54 -0.07 -2.11 16 19 C -0.15 -1.54 9.79 30.62 0.30 -1.24 16 20 C -0.16 -2.11 10.24 30.62 0.31 -1.80 16 21 N -0.50 -13.01 10.26 -183.02 -1.88 -14.89 16 22 C 0.10 2.46 10.60 84.96 0.90 3.36 16 23 C -0.10 -3.04 9.44 22.48 0.21 -2.83 16 24 C -0.13 -5.04 9.68 22.24 0.22 -4.82 16 25 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 26 H 0.01 0.30 8.08 -2.38 -0.02 0.28 16 27 H 0.00 0.25 8.08 -2.39 -0.02 0.23 16 28 H 0.12 4.49 8.06 -2.92 -0.02 4.47 16 29 H 0.14 3.62 6.24 -2.91 -0.02 3.60 16 30 H 0.16 2.56 6.33 -2.91 -0.02 2.54 16 31 H 0.17 1.94 6.23 -2.91 -0.02 1.92 16 32 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 0.89 6.38 -2.39 -0.02 0.88 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.17 3.73 6.23 -2.91 -0.02 3.71 16 38 H 0.15 3.40 6.28 -2.91 -0.02 3.38 16 39 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -67.62 329.90 5.00 -62.62 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.06 Total: 13.48 kcal Atomic # 6 Polarization: -55.36 SS G_CDS: 3.50 Total: -51.86 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -1.59 Total: -70.51 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -67.62 5.00 -62.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238854220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.062 kcal (2) G-P(sol) polarization free energy of solvation -67.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds