Wall clock time and date at job start Fri Apr 10 2020 14:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46507 * 109.46946 * 2 1 4 4 C 1.36940 * 120.00005 * 275.94954 * 3 2 1 5 5 H 1.07999 * 120.00188 * 146.59553 * 4 3 2 6 6 C 1.38814 * 119.99447 * 326.58778 * 4 3 2 7 7 N 1.31614 * 120.00678 * 336.12041 * 6 4 3 8 8 Si 1.86804 * 119.99555 * 156.11874 * 6 4 3 9 9 H 1.48496 * 109.47243 * 59.99676 * 8 6 4 10 10 H 1.48502 * 109.47038 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46862 * 299.99906 * 8 6 4 12 12 S 1.65595 * 120.00132 * 95.94667 * 3 2 1 13 13 O 1.42094 * 106.40402 * 156.45922 * 12 3 2 14 14 O 1.42105 * 106.40038 * 23.53805 * 12 3 2 15 15 C 1.76204 * 107.22066 * 270.00063 * 12 3 2 16 16 C 1.38349 * 120.34298 * 269.72561 * 15 12 3 17 17 N 1.31923 * 121.09293 * 179.67318 * 16 15 12 18 18 C 1.31688 * 121.88573 * 0.63848 * 17 16 15 19 19 C 1.39586 * 120.55638 * 359.64896 * 18 17 16 20 20 C 1.43203 * 120.56901 * 180.02562 * 19 18 17 21 21 N 6.69253 * 51.17038 * 70.94109 * 2 1 3 22 22 C 1.38341 * 120.34567 * 89.99681 * 15 12 3 23 23 H 1.09002 * 109.47021 * 59.99736 * 1 2 3 24 24 H 1.08997 * 109.46814 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47100 * 299.99947 * 1 2 3 26 26 H 1.08995 * 109.47001 * 240.00156 * 2 1 3 27 27 H 1.08998 * 109.47286 * 119.99375 * 2 1 3 28 28 H 0.96996 * 120.00254 * 179.97438 * 7 6 4 29 29 H 1.08001 * 119.45547 * 359.97438 * 16 15 12 30 30 H 1.07997 * 119.72860 * 179.68338 * 18 17 16 31 31 H 1.08005 * 120.85619 * 359.97438 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1307 2.0678 -1.1796 5 1 1.9556 3.1333 -1.2030 6 6 2.4697 1.3942 -2.3450 7 7 3.1256 0.2550 -2.2797 8 14 1.9949 2.1047 -4.0061 9 1 2.6201 3.4417 -4.1696 10 1 2.4688 1.2007 -5.0848 11 1 0.5177 2.2361 -4.0843 12 16 2.4344 2.1124 1.4264 13 8 3.3454 3.1510 1.0941 14 8 2.7460 1.0671 2.3371 15 6 0.9872 2.9007 2.0501 16 6 0.7024 4.2107 1.7082 17 7 -0.3801 4.8132 2.1615 18 6 -1.2291 4.2064 2.9647 19 6 -1.0109 2.8861 3.3615 20 6 -1.9342 2.2259 4.2346 21 7 -2.6662 1.7024 4.9278 22 6 0.1268 2.2179 2.8912 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.3621 -0.2158 -3.0941 29 1 1.3750 4.7475 1.0556 30 1 -2.1019 4.7346 3.3191 31 1 0.3270 1.1959 3.1773 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289841691.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:12 Heat of formation + Delta-G solvation = -15.346272 kcal Electronic energy + Delta-G solvation = -19915.603895 eV Core-core repulsion = 16710.243471 eV Total energy + Delta-G solvation = -3205.360424 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46664 -38.10359 -37.82397 -37.67944 -36.62334 -34.05533 -33.51328 -32.93586 -30.93784 -26.47221 -26.00980 -25.27509 -23.35518 -21.25059 -20.06379 -18.82108 -18.31915 -18.18753 -17.90748 -17.40892 -16.51336 -16.08903 -15.72302 -15.22880 -14.65991 -14.55775 -14.44252 -14.33915 -14.28968 -14.08522 -13.70770 -13.62291 -13.10277 -12.95981 -12.82830 -12.61145 -12.55945 -12.39180 -12.13915 -11.93379 -11.68988 -11.31601 -10.98853 -10.76398 -10.58217 -9.58943 -8.13715 -5.88090 -0.79159 -0.45430 -0.28072 1.40181 1.55722 1.57531 1.63826 1.66166 2.31892 2.46748 2.52752 2.69615 2.92603 3.14328 3.22293 3.44266 3.51440 3.67099 4.03004 4.15150 4.42830 4.58787 4.61220 4.75056 4.76213 4.96597 5.14877 5.32807 5.54679 5.64566 5.99189 6.19576 6.48948 6.53808 7.13334 7.47739 8.87716 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020916 B = 0.006349 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.397423 B = 4409.086379 C = 4450.887555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.850 5.850 4 C -0.308 4.308 5 H 0.099 0.901 6 C 0.000 4.000 7 N -0.890 5.890 8 Si 0.971 3.029 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.265 1.265 12 S 2.648 3.352 13 O -0.994 6.994 14 O -1.009 7.009 15 C -0.717 4.717 16 C 0.228 3.772 17 N -0.497 5.497 18 C 0.211 3.789 19 C -0.098 4.098 20 C 0.286 3.714 21 N -0.434 5.434 22 C 0.068 3.932 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.268 0.732 29 H 0.183 0.817 30 H 0.215 0.785 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 4.866 5.266 11.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 N -0.683 5.683 4 C -0.442 4.442 5 H 0.117 0.883 6 C -0.205 4.205 7 N -0.530 5.530 8 Si 0.796 3.204 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.190 1.190 12 S 2.746 3.254 13 O -0.983 6.983 14 O -0.999 6.999 15 C -0.805 4.805 16 C 0.070 3.930 17 N -0.205 5.205 18 C 0.050 3.950 19 C -0.105 4.105 20 C -0.030 4.030 21 N -0.110 5.110 22 C 0.040 3.960 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.200 0.800 30 H 0.231 0.769 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.249 4.817 6.501 12.289 hybrid contribution 0.093 -0.503 -0.837 0.981 sum -9.157 4.314 5.663 11.599 Atomic orbital electron populations 1.22100 0.95914 1.01834 1.01462 1.21452 0.93938 0.83239 1.03884 1.52687 1.77048 1.21087 1.17433 1.19326 1.45843 0.94466 0.84577 0.88341 1.26035 0.94790 0.97136 1.02502 1.70058 1.34935 1.18170 1.29813 0.85324 0.79155 0.78253 0.77689 1.19370 1.21313 1.18960 1.03851 0.74166 0.73420 0.74003 1.93427 1.60938 1.60000 1.83984 1.93413 1.83403 1.56496 1.66546 1.31922 1.25038 1.08683 1.14861 1.23008 0.91477 0.88893 0.89595 1.68082 1.03651 1.37191 1.11619 1.23926 0.96285 0.88574 0.86167 1.16894 0.94871 0.96552 1.02173 1.25023 0.92541 0.93030 0.92438 1.81307 1.10503 1.08409 1.10738 1.21519 0.88292 0.99810 0.86422 0.92928 0.90971 0.93160 0.88729 0.92119 0.92209 0.79982 0.76892 0.81733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 10.20 71.98 0.73 -4.34 16 2 C 0.10 4.20 6.01 86.38 0.52 4.72 16 3 N -0.85 -37.70 2.85 -343.43 -0.98 -38.67 16 4 C -0.31 -14.61 8.87 84.03 0.75 -13.86 16 5 H 0.10 4.43 7.94 -2.91 -0.02 4.41 16 6 C 0.00 0.00 4.98 84.86 0.42 0.42 16 7 N -0.89 -45.79 11.27 21.65 0.24 -45.54 16 8 Si 0.97 38.40 29.62 68.60 2.03 40.43 16 9 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 10 H -0.29 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 12 S 2.65 108.51 5.67 -56.49 -0.32 108.19 16 13 O -0.99 -46.15 16.50 -128.00 -2.11 -48.26 16 14 O -1.01 -44.11 15.90 -128.00 -2.03 -46.14 16 15 C -0.72 -22.08 5.98 22.32 0.13 -21.95 16 16 C 0.23 6.39 10.68 84.71 0.90 7.30 16 17 N -0.50 -11.80 10.34 -194.71 -2.01 -13.81 16 18 C 0.21 3.82 10.92 85.04 0.93 4.75 16 19 C -0.10 -2.05 5.75 -21.26 -0.12 -2.17 16 20 C 0.29 6.18 15.37 88.33 1.36 7.54 16 21 N -0.43 -11.09 18.54 19.00 0.35 -10.74 16 22 C 0.07 1.77 8.39 22.74 0.19 1.96 16 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.05 1.45 7.13 -2.38 -0.02 1.43 16 26 H 0.10 4.43 5.31 -2.39 -0.01 4.42 16 27 H 0.06 2.45 6.90 -2.39 -0.02 2.43 16 28 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 29 H 0.18 5.01 7.61 -2.91 -0.02 4.99 16 30 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.17 4.01 7.70 -2.91 -0.02 3.99 16 Total: -1.00 -62.26 294.41 2.16 -60.11 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.17 Total: 10.09 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 5.82 Total: -15.64 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -2.40 Total: -108.77 kcal Atomic # 8 Polarization: -90.26 SS G_CDS: -4.15 Total: -94.41 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: 108.51 SS G_CDS: -0.32 Total: 108.19 kcal Total: -62.26 2.16 -60.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289841691.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.759 kcal (2) G-P(sol) polarization free energy of solvation -62.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds