Wall clock time and date at job start Fri Apr 10 2020 14:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40011 * 125.95516 * 2 1 4 4 C 1.30121 * 109.78354 * 179.97438 * 3 2 1 5 5 C 1.41623 * 108.67487 * 0.02562 * 4 3 2 6 6 C 1.40144 * 133.47964 * 179.97438 * 5 4 3 7 7 C 1.36252 * 119.93865 * 180.02562 * 6 5 4 8 8 C 1.39637 * 120.61430 * 359.78833 * 7 6 5 9 9 N 1.39662 * 119.78307 * 180.26956 * 8 7 6 10 10 S 1.65608 * 120.00024 * 255.38690 * 9 8 7 11 11 O 1.42101 * 106.40044 * 177.78294 * 10 9 8 12 12 O 1.42098 * 106.40359 * 310.70296 * 10 9 8 13 13 C 1.76199 * 107.21726 * 64.24193 * 10 9 8 14 14 H 1.08005 * 119.99888 * 4.88298 * 13 10 9 15 15 C 1.37870 * 120.00135 * 184.87543 * 13 10 9 16 16 N 1.31518 * 120.00067 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00194 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47071 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47218 * 120.00113 * 17 15 13 20 20 H 1.48495 * 109.47314 * 240.00476 * 17 15 13 21 21 C 1.38273 * 120.43137 * 0.46310 * 8 7 6 22 22 C 1.37174 * 125.94586 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.46917 * 270.02935 * 1 2 3 24 24 H 1.09000 * 109.46799 * 30.02227 * 1 2 3 25 25 H 1.08998 * 109.47560 * 150.02305 * 1 2 3 26 26 H 1.08004 * 125.65969 * 179.97438 * 4 3 2 27 27 H 1.07999 * 120.03456 * 0.02715 * 6 5 4 28 28 H 1.07994 * 119.69392 * 180.02562 * 7 6 5 29 29 H 0.96992 * 120.00303 * 75.39216 * 9 8 7 30 30 H 0.96996 * 119.99859 * 179.97438 * 16 15 13 31 31 H 1.08000 * 120.16650 * 179.77844 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2871 1.1334 0.0000 4 6 3.5369 0.7710 0.0005 5 6 3.5987 -0.6439 0.0003 6 6 4.6568 -1.5629 0.0002 7 6 4.3959 -2.9002 -0.0005 8 6 3.0803 -3.3681 0.0033 9 7 2.8328 -4.7426 0.0082 10 16 2.3276 -5.4979 -1.3763 11 8 2.2166 -6.8793 -1.0621 12 8 1.2468 -4.7268 -1.8827 13 6 3.6322 -5.3584 -2.5524 14 1 4.5744 -4.9163 -2.2638 15 6 3.4504 -5.8136 -3.8410 16 7 2.3029 -6.3516 -4.1926 17 14 4.8332 -5.6650 -5.0880 18 1 6.0116 -5.0280 -4.4469 19 1 5.2066 -7.0168 -5.5767 20 1 4.3812 -4.8326 -6.2316 21 6 2.0209 -2.4795 -0.0018 22 6 2.2703 -1.1105 0.0005 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 4.3860 1.4384 0.0003 27 1 5.6780 -1.2115 0.0008 28 1 5.2143 -3.6049 -0.0001 29 1 2.9568 -5.2549 0.8224 30 1 2.1749 -6.6716 -5.0993 31 1 1.0050 -2.8461 -0.0025 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192928610.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:19 Heat of formation + Delta-G solvation = -24.599981 kcal Electronic energy + Delta-G solvation = -19667.372701 eV Core-core repulsion = 16461.611005 eV Total energy + Delta-G solvation = -3205.761695 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.36831 -38.95392 -37.41624 -36.20439 -35.35787 -35.04236 -34.18128 -31.29362 -29.40552 -28.26533 -27.48617 -23.94027 -22.89387 -21.69701 -21.10626 -19.48948 -18.77145 -18.30229 -17.94661 -17.12624 -16.72652 -16.43961 -16.07867 -15.71754 -15.36479 -15.29866 -14.54833 -14.02245 -13.99195 -13.66873 -13.50322 -13.27140 -13.03013 -12.96857 -12.57525 -12.50241 -12.43845 -12.26734 -12.14284 -11.86667 -11.26479 -11.12217 -11.03386 -10.67771 -9.43799 -8.86164 -8.76023 -7.48187 -0.25428 0.31748 0.57643 1.34262 1.35189 1.46660 1.53277 1.59460 2.20900 2.58252 2.77117 2.86741 3.54826 3.64084 3.71372 3.96022 4.16124 4.28127 4.38149 4.41311 4.46494 4.60045 4.62433 4.74175 4.93025 5.10279 5.29368 5.35684 5.55089 5.60102 5.85746 5.92962 6.01924 6.35411 6.64277 6.78462 8.20762 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.006107 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.593392 B = 4583.746374 C = 4969.327335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.418 5.418 3 N -0.282 5.282 4 C 0.085 3.915 5 C -0.195 4.195 6 C -0.019 4.019 7 C -0.164 4.164 8 C 0.188 3.812 9 N -1.070 6.070 10 S 2.711 3.289 11 O -1.039 7.039 12 O -1.029 7.029 13 C -1.030 5.030 14 H 0.126 0.874 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.988 3.012 18 H -0.241 1.241 19 H -0.259 1.259 20 H -0.263 1.263 21 C -0.156 4.156 22 C 0.113 3.887 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.238 0.762 27 H 0.177 0.823 28 H 0.151 0.849 29 H 0.426 0.574 30 H 0.298 0.702 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.761 12.714 8.083 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.207 5.207 3 N -0.096 5.096 4 C -0.110 4.110 5 C -0.203 4.203 6 C -0.040 4.040 7 C -0.186 4.186 8 C 0.090 3.910 9 N -0.825 5.825 10 S 2.814 3.186 11 O -1.030 7.030 12 O -1.019 7.019 13 C -1.164 5.164 14 H 0.144 0.856 15 C -0.142 4.142 16 N -0.527 5.527 17 Si 0.806 3.194 18 H -0.163 1.163 19 H -0.183 1.183 20 H -0.188 1.188 21 C -0.181 4.181 22 C -0.004 4.004 23 H 0.104 0.896 24 H 0.120 0.880 25 H 0.099 0.901 26 H 0.254 0.746 27 H 0.195 0.805 28 H 0.169 0.831 29 H 0.265 0.735 30 H 0.108 0.892 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.671 13.272 7.744 15.798 hybrid contribution 0.777 -1.232 -0.495 1.538 sum 4.448 12.040 7.249 14.741 Atomic orbital electron populations 1.21987 0.72766 1.04957 1.04170 1.48552 1.06770 1.01019 1.64321 1.76577 1.03116 1.09457 1.20415 1.24575 0.95450 0.93207 0.97744 1.19377 0.92732 0.94985 1.13222 1.20642 0.99368 0.90378 0.93566 1.21204 0.95389 0.97169 1.04841 1.17222 0.93148 0.82025 0.98600 1.53127 1.86952 1.13845 1.28553 1.00327 0.75077 0.71076 0.72097 1.93332 1.88663 1.35707 1.85253 1.93314 1.56809 1.72241 1.79534 1.30813 1.19739 1.54430 1.11407 0.85619 1.26010 0.99143 0.88561 1.00504 1.70001 1.25827 1.33920 1.22909 0.85126 0.77870 0.79594 0.76794 1.16315 1.18326 1.18774 1.20327 0.99780 0.89869 1.08131 1.18813 0.92158 0.89064 1.00321 0.89575 0.87983 0.90066 0.74622 0.80534 0.83104 0.73517 0.89158 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.35 11.45 127.77 1.46 3.82 16 2 N -0.42 -12.66 4.07 -361.05 -1.47 -14.13 16 3 N -0.28 -7.87 12.44 -56.21 -0.70 -8.57 16 4 C 0.08 1.94 12.05 85.78 1.03 2.97 16 5 C -0.19 -5.42 6.17 -21.36 -0.13 -5.55 16 6 C -0.02 -0.45 10.05 22.27 0.22 -0.23 16 7 C -0.16 -4.86 9.88 22.14 0.22 -4.65 16 8 C 0.19 6.92 5.80 38.24 0.22 7.14 16 9 N -1.07 -42.52 5.68 -51.32 -0.29 -42.81 16 10 S 2.71 144.69 5.02 -56.49 -0.28 144.41 16 11 O -1.04 -61.27 18.02 -128.00 -2.31 -63.57 16 12 O -1.03 -61.07 16.92 -128.00 -2.17 -63.24 16 13 C -1.03 -55.69 9.66 67.73 0.65 -55.03 16 14 H 0.13 6.04 7.81 -2.91 -0.02 6.02 16 15 C 0.07 3.89 5.46 84.65 0.46 4.35 16 16 N -0.90 -53.14 13.10 21.45 0.28 -52.86 16 17 Si 0.99 40.69 29.54 68.60 2.03 42.72 16 18 H -0.24 -9.04 7.11 99.48 0.71 -8.33 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 C -0.16 -5.85 9.24 22.50 0.21 -5.64 16 22 C 0.11 3.80 6.88 39.15 0.27 4.07 16 23 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 26 H 0.24 2.81 8.06 -2.91 -0.02 2.79 16 27 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 28 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 29 H 0.43 14.03 8.95 -96.75 -0.87 13.16 16 30 H 0.30 15.89 8.31 -92.71 -0.77 15.11 16 31 H 0.12 4.61 7.93 -2.91 -0.02 4.59 16 Total: -1.00 -80.69 294.34 0.02 -80.66 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.31 Total: 26.16 kcal Atomic # 6 Polarization: -53.39 SS G_CDS: 4.62 Total: -48.77 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -2.18 Total: -118.38 kcal Atomic # 8 Polarization: -122.34 SS G_CDS: -4.47 Total: -126.81 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 144.69 SS G_CDS: -0.28 Total: 144.41 kcal Total: -80.69 0.02 -80.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192928610.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.065 kcal (2) G-P(sol) polarization free energy of solvation -80.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds