Wall clock time and date at job start Fri Apr 10 2020 14:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99608 * 359.97438 * 7 2 1 10 10 O 1.42094 * 106.40532 * 293.54233 * 9 7 2 11 11 O 1.42100 * 106.40298 * 66.46529 * 9 7 2 12 12 N 1.65608 * 107.21534 * 180.02562 * 9 7 2 13 13 C 1.47285 * 125.61626 * 269.69437 * 12 9 7 14 14 C 1.54671 * 105.19739 * 156.11430 * 13 12 9 15 15 H 1.09000 * 113.84956 * 273.39032 * 14 13 12 16 16 C 1.56038 * 101.89458 * 35.65487 * 14 13 12 17 17 H 1.09004 * 113.60486 * 203.49916 * 16 14 13 18 18 C 1.54542 * 103.99648 * 79.81145 * 16 14 13 19 19 C 1.54021 * 104.95428 * 34.99199 * 18 16 14 20 20 C 1.53690 * 106.69259 * 336.81381 * 19 18 16 21 21 F 1.39896 * 109.89520 * 121.01918 * 20 19 18 22 22 F 1.39899 * 109.89502 * 242.06525 * 20 19 18 23 23 C 1.46882 * 125.61339 * 90.00198 * 12 9 7 24 24 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 25 25 H 1.09002 * 110.27257 * 275.18744 * 13 12 9 26 26 H 1.09003 * 110.27339 * 37.26167 * 13 12 9 27 27 H 1.08997 * 110.34590 * 153.86576 * 18 16 14 28 28 H 1.09006 * 110.33944 * 276.12783 * 18 16 14 29 29 H 1.08999 * 110.01450 * 96.12243 * 19 18 16 30 30 H 1.09001 * 110.01881 * 217.46122 * 19 18 16 31 31 H 1.09000 * 109.81218 * 301.57463 * 23 12 9 32 32 H 1.09006 * 109.80998 * 62.40706 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1236 -2.7199 -0.0005 10 8 0.4519 -2.7955 1.2493 11 8 0.4511 -2.7950 -1.2501 12 7 2.2484 -3.9354 -0.0005 13 6 2.8264 -4.5692 -1.1978 14 6 4.1857 -5.1445 -0.7359 15 1 5.0076 -4.4305 -0.7893 16 6 3.8627 -5.6033 0.7201 17 1 4.7405 -5.6642 1.3634 18 6 3.1444 -6.9590 0.5342 19 6 3.8295 -7.6081 -0.6830 20 6 4.4522 -6.4654 -1.5006 21 9 5.8330 -6.6591 -1.6147 22 9 3.8714 -6.4186 -2.7724 23 6 2.8294 -4.5631 1.1936 24 1 -0.4850 -0.8401 0.0004 25 1 2.1760 -5.3684 -1.5533 26 1 2.9777 -3.8274 -1.9821 27 1 3.2750 -7.5815 1.4193 28 1 2.0846 -6.8018 0.3333 29 1 4.6072 -8.2958 -0.3506 30 1 3.0936 -8.1407 -1.2854 31 1 3.3202 -3.8072 1.8066 32 1 2.0461 -5.0550 1.7705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952834.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:36 Heat of formation + Delta-G solvation = -196.074930 kcal Electronic energy + Delta-G solvation = -21212.545751 eV Core-core repulsion = 17548.659158 eV Total energy + Delta-G solvation = -3663.886594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.97246 -47.02442 -39.48006 -35.60952 -34.45734 -34.19364 -33.18973 -29.99303 -29.00156 -25.75997 -25.56613 -22.57546 -20.99804 -20.12006 -19.34153 -17.99534 -17.65045 -17.02229 -16.50075 -15.62815 -14.96576 -14.82880 -14.68490 -14.13859 -14.05070 -13.73241 -13.62188 -13.42122 -13.10250 -13.02016 -12.76696 -12.32494 -12.02271 -11.63659 -11.24271 -11.10410 -11.04282 -10.91712 -10.85749 -10.78524 -10.65173 -10.55511 -10.45309 -10.35381 -9.21775 -8.87263 -8.20047 -7.21748 -5.43589 1.94920 3.21126 3.22982 3.40088 3.57907 3.74687 3.90838 4.11275 4.17990 4.38626 4.65258 4.72420 4.87066 4.92397 5.01032 5.15316 5.25978 5.27709 5.51143 5.54356 5.65364 5.68903 5.85371 5.90947 5.98000 6.06873 6.10326 6.15468 6.59984 7.16685 7.58578 8.01778 8.57667 10.15780 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.028214 B = 0.005809 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.180068 B = 4818.987399 C = 5096.113384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.089 3.911 3 Si 1.086 2.914 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.274 1.274 7 C -1.084 5.084 8 H 0.103 0.897 9 S 2.703 3.297 10 O -1.005 7.005 11 O -1.005 7.005 12 N -1.013 6.013 13 C 0.137 3.863 14 C -0.137 4.137 15 H 0.121 0.879 16 C -0.096 4.096 17 H 0.108 0.892 18 C -0.118 4.118 19 C -0.161 4.161 20 C 0.289 3.711 21 F -0.201 7.201 22 F -0.195 7.195 23 C 0.130 3.870 24 H 0.276 0.724 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.235 -12.876 0.737 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.129 4.129 3 Si 0.909 3.091 4 H -0.205 1.205 5 H -0.199 1.199 6 H -0.199 1.199 7 C -1.218 5.218 8 H 0.122 0.878 9 S 2.806 3.194 10 O -0.996 6.996 11 O -0.995 6.995 12 N -0.849 5.849 13 C 0.011 3.989 14 C -0.158 4.158 15 H 0.139 0.861 16 C -0.116 4.116 17 H 0.127 0.873 18 C -0.156 4.156 19 C -0.199 4.199 20 C 0.252 3.748 21 F -0.182 7.182 22 F -0.176 7.176 23 C 0.004 3.996 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.995 -11.409 0.700 14.545 hybrid contribution 0.956 -1.382 -0.241 1.698 sum 9.951 -12.791 0.459 16.212 Atomic orbital electron populations 1.70801 1.07194 1.31996 1.37468 1.26004 0.95129 1.03973 0.87784 0.83385 0.74759 0.72815 0.78131 1.20454 1.19906 1.19903 1.31532 1.08102 1.12387 1.69828 0.87821 1.00778 0.72222 0.73469 0.72886 1.93415 1.72925 1.87719 1.45508 1.93426 1.72857 1.87695 1.45510 1.58861 1.61719 1.53761 1.10544 1.21642 0.90919 0.97826 0.88509 1.24211 1.00855 0.94970 0.95740 0.86123 1.23042 0.98639 0.94884 0.95023 0.87346 1.22402 1.00521 0.95461 0.97178 1.23085 1.02111 0.96699 0.97978 1.21971 0.74654 0.97649 0.80511 1.92999 1.32454 1.96335 1.96437 1.93017 1.83905 1.97466 1.43217 1.21490 0.95220 0.94919 0.87949 0.91170 0.91280 0.89888 0.89842 0.89913 0.88662 0.88638 0.91393 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.83 13.66 55.43 0.76 -25.08 16 2 C 0.09 2.54 5.46 -17.82 -0.10 2.45 16 3 Si 1.09 24.03 29.90 -169.99 -5.08 18.95 16 4 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -1.08 -29.84 9.75 30.60 0.30 -29.54 16 8 H 0.10 2.65 7.81 -52.49 -0.41 2.24 16 9 S 2.70 70.40 4.58 -107.50 -0.49 69.91 16 10 O -1.01 -28.34 17.22 -57.17 -0.98 -29.33 16 11 O -1.00 -28.68 17.22 -57.17 -0.98 -29.66 16 12 N -1.01 -19.97 3.69 -111.91 -0.41 -20.38 16 13 C 0.14 2.33 5.36 -2.73 -0.01 2.31 16 14 C -0.14 -1.82 3.94 -87.10 -0.34 -2.16 16 15 H 0.12 1.52 8.14 -51.93 -0.42 1.09 16 16 C -0.10 -1.11 4.09 -87.62 -0.36 -1.47 16 17 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.12 -1.16 5.66 -25.39 -0.14 -1.31 16 19 C -0.16 -1.53 6.48 -25.84 -0.17 -1.69 16 20 C 0.29 3.54 2.22 -25.35 -0.06 3.49 16 21 F -0.20 -2.56 17.01 2.25 0.04 -2.52 16 22 F -0.20 -2.75 15.70 2.25 0.04 -2.71 16 23 C 0.13 2.03 6.25 -3.27 -0.02 2.01 16 24 H 0.28 8.66 6.52 -40.82 -0.27 8.40 16 25 H 0.07 1.12 7.17 -51.93 -0.37 0.74 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.92 7.57 -51.93 -0.39 0.53 16 29 H 0.09 0.74 8.01 -51.93 -0.42 0.32 16 30 H 0.10 0.84 8.01 -51.93 -0.42 0.43 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.05 7.77 -51.93 -0.40 0.65 16 LS Contribution 283.09 15.07 4.27 4.27 Total: -1.00 -34.40 283.09 -7.35 -41.75 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -3.59 Total: 0.73 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -0.90 Total: -25.91 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.34 Total: -45.46 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: -1.97 Total: -58.99 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.07 Total: -5.24 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.08 Total: 18.95 kcal Atomic # 16 Polarization: 70.40 SS G_CDS: -0.49 Total: 69.91 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.40 -7.35 -41.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952834.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.327 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds