Wall clock time and date at job start Fri Apr 10 2020 14:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34138 * 125.03491 * 2 1 4 4 C 1.38222 * 107.89614 * 179.97438 * 3 2 1 5 5 C 1.41181 * 134.73129 * 179.97438 * 4 3 2 6 6 C 1.36219 * 119.48131 * 180.02562 * 5 4 3 7 7 N 1.39914 * 119.22077 * 179.97438 * 6 5 4 8 8 S 1.65592 * 120.00003 * 224.99756 * 7 6 5 9 9 O 1.42109 * 106.40285 * 178.53574 * 8 7 6 10 10 O 1.42094 * 106.40531 * 311.45862 * 8 7 6 11 11 C 1.76202 * 107.21838 * 65.00118 * 8 7 6 12 12 H 1.07998 * 120.00012 * 359.97438 * 11 8 7 13 13 C 1.37882 * 119.99999 * 179.97438 * 11 8 7 14 14 N 1.31511 * 119.99814 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 119.99911 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.47211 * 89.99733 * 15 13 11 17 17 H 1.48500 * 109.47220 * 209.99798 * 15 13 11 18 18 H 1.48501 * 109.47177 * 330.00122 * 15 13 11 19 19 C 1.40234 * 121.56597 * 359.95645 * 6 5 4 20 20 C 1.35530 * 121.76087 * 0.04582 * 19 6 5 21 21 C 1.41183 * 119.70107 * 359.97438 * 20 19 6 22 22 N 1.32139 * 134.55392 * 180.32504 * 21 20 19 23 23 H 1.09001 * 109.47060 * 90.00649 * 1 2 3 24 24 H 1.09004 * 109.47073 * 210.00138 * 1 2 3 25 25 H 1.09000 * 109.47212 * 330.00220 * 1 2 3 26 26 H 1.08003 * 126.05282 * 0.02562 * 3 2 1 27 27 H 1.08003 * 120.25675 * 0.02833 * 5 4 3 28 28 H 0.96999 * 119.99533 * 44.99979 * 7 6 5 29 29 H 0.97006 * 119.99561 * 179.97438 * 14 13 11 30 30 H 1.07997 * 119.12016 * 180.02562 * 19 6 5 31 31 H 1.07999 * 120.15147 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2351 1.0983 0.0000 4 6 3.5560 0.6910 0.0006 5 6 4.8010 1.3566 0.0004 6 6 5.9513 0.6270 0.0007 7 7 7.1821 1.2922 0.0000 8 16 8.3925 0.7931 -1.0140 9 8 9.4834 1.6792 -0.8034 10 8 8.4935 -0.6154 -0.8555 11 6 7.8383 1.0697 -2.6635 12 1 6.8614 1.4948 -2.8409 13 6 8.6518 0.7436 -3.7280 14 7 9.8415 0.2265 -3.5120 15 14 8.0640 1.0362 -5.4767 16 1 8.4617 2.3994 -5.9110 17 1 8.6778 0.0300 -6.3801 18 1 6.5851 0.9117 -5.5292 19 6 5.9311 -0.7752 0.0020 20 6 4.7687 -1.4720 0.0022 21 6 3.5382 -0.7798 0.0015 22 7 2.2685 -1.1459 0.0068 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.8851 2.1200 0.0004 27 1 4.8411 2.4359 0.0002 28 1 7.3264 2.0458 0.5934 29 1 10.4137 -0.0034 -4.2609 30 1 6.8670 -1.3143 0.0025 31 1 4.7835 -2.5519 0.0036 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972122.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:31 Heat of formation + Delta-G solvation = 13.015868 kcal Electronic energy + Delta-G solvation = -19426.222973 eV Core-core repulsion = 16222.092423 eV Total energy + Delta-G solvation = -3204.130550 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.01744 -37.76919 -35.28552 -34.10138 -34.03594 -33.07721 -31.56111 -31.34381 -27.95785 -26.52726 -26.12496 -22.69070 -21.56954 -20.37427 -19.06842 -17.86672 -17.13622 -16.71222 -16.41330 -15.80397 -15.54903 -14.90656 -14.18898 -13.86466 -13.73615 -13.67384 -13.28887 -13.12735 -12.84112 -12.53933 -12.03268 -11.56322 -11.42524 -11.25510 -11.19742 -10.59513 -10.51767 -10.38047 -10.20767 -10.14488 -9.88307 -9.44529 -9.24036 -8.80551 -8.19426 -7.06870 -6.69557 -5.31894 0.87123 2.04899 2.31556 2.43057 2.68384 3.08395 3.14988 3.22820 4.06368 4.19050 4.28120 4.61207 4.65036 4.67289 4.88896 4.99878 5.14773 5.28041 5.52515 5.61976 5.70716 5.89439 5.98830 6.37617 6.44061 6.51159 6.75044 6.84828 6.95119 7.13566 7.25148 7.34321 7.77949 7.93021 7.99047 8.89426 10.23684 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.005539 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.752053 B = 5054.021892 C = 5671.624867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.334 5.334 3 C 0.058 3.942 4 C -0.180 4.180 5 C -0.092 4.092 6 C 0.154 3.846 7 N -1.075 6.075 8 S 2.708 3.292 9 O -1.000 7.000 10 O -0.997 6.997 11 C -1.013 5.013 12 H 0.104 0.896 13 C 0.134 3.866 14 N -0.845 5.845 15 Si 0.920 3.080 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.262 1.262 19 C -0.092 4.092 20 C -0.094 4.094 21 C 0.095 3.905 22 N -0.313 5.313 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.181 0.819 27 H 0.126 0.874 28 H 0.410 0.590 29 H 0.291 0.709 30 H 0.169 0.831 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.351 2.500 5.958 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.110 5.110 3 C -0.097 4.097 4 C -0.190 4.190 5 C -0.117 4.117 6 C 0.056 3.944 7 N -0.820 5.820 8 S 2.810 3.190 9 O -0.990 6.990 10 O -0.987 6.987 11 C -1.147 5.147 12 H 0.122 0.878 13 C -0.084 4.084 14 N -0.475 5.475 15 Si 0.744 3.256 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.186 1.186 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.058 4.058 22 N -0.141 5.141 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.198 0.802 27 H 0.143 0.857 28 H 0.244 0.756 29 H 0.102 0.898 30 H 0.186 0.814 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.304 0.896 6.103 17.432 hybrid contribution -0.261 1.535 -1.194 1.962 sum -16.565 2.431 4.909 17.447 Atomic orbital electron populations 1.21970 0.74161 1.04729 1.03807 1.48399 1.07141 1.04143 1.51333 1.22451 0.90409 0.92909 1.03907 1.19348 0.92637 0.93384 1.13634 1.20033 0.89143 0.98938 1.03614 1.16798 0.85182 0.90782 1.01605 1.53989 1.26768 1.45177 1.56091 1.00764 0.70667 0.73020 0.74593 1.93390 1.51020 1.67156 1.87425 1.93283 1.85170 1.32648 1.87569 1.30441 1.13306 1.57043 1.13941 0.87771 1.24720 0.92832 0.89270 1.01537 1.69888 1.07950 1.34314 1.35340 0.86161 0.80034 0.78883 0.80523 1.19181 1.19916 1.18607 1.21737 1.00688 0.93135 0.96047 1.19754 0.87655 0.99372 1.04736 1.21039 0.92234 0.93099 0.99421 1.77651 1.01109 1.04367 1.30939 0.90219 0.88953 0.89210 0.80205 0.85653 0.75642 0.89839 0.81380 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.39 59.85 0.68 1.31 16 2 N -0.33 -4.16 3.95 -67.57 -0.27 -4.42 16 3 C 0.06 0.70 11.51 -16.55 -0.19 0.51 16 4 C -0.18 -2.88 6.33 -105.20 -0.67 -3.54 16 5 C -0.09 -1.52 9.97 -39.19 -0.39 -1.91 16 6 C 0.15 2.97 6.15 -84.14 -0.52 2.45 16 7 N -1.08 -21.52 5.73 32.21 0.18 -21.34 16 8 S 2.71 70.50 4.94 -107.50 -0.53 69.96 16 9 O -1.00 -28.66 18.02 -57.17 -1.03 -29.69 16 10 O -1.00 -27.69 14.84 -57.17 -0.85 -28.54 16 11 C -1.01 -27.88 9.68 30.60 0.30 -27.58 16 12 H 0.10 2.68 7.81 -52.49 -0.41 2.27 16 13 C 0.13 3.74 5.46 -17.82 -0.10 3.65 16 14 N -0.85 -24.61 13.19 55.43 0.73 -23.88 16 15 Si 0.92 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 19 C -0.09 -1.81 9.02 -39.80 -0.36 -2.17 16 20 C -0.09 -1.67 10.07 -39.43 -0.40 -2.07 16 21 C 0.10 1.68 7.49 -83.03 -0.62 1.06 16 22 N -0.31 -5.14 12.55 33.26 0.42 -4.72 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.09 0.32 8.13 -51.93 -0.42 -0.10 16 26 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 27 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.41 6.81 8.95 -34.47 -0.31 6.50 16 29 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.17 3.57 5.44 -52.49 -0.29 3.28 16 31 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 LS Contribution 290.26 15.07 4.37 4.37 Total: -1.00 -36.88 290.26 -6.93 -43.81 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -2.68 Total: 7.00 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -2.26 Total: -28.30 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 1.07 Total: -54.36 kcal Atomic # 8 Polarization: -56.35 SS G_CDS: -1.88 Total: -58.23 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 70.50 SS G_CDS: -0.53 Total: 69.96 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -36.88 -6.93 -43.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972122.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.826 kcal (2) G-P(sol) polarization free energy of solvation -36.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds