Wall clock time and date at job start Fri Apr 10 2020 14:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34138 * 125.03491 * 2 1 4 4 C 1.38222 * 107.89614 * 179.97438 * 3 2 1 5 5 C 1.41181 * 134.73129 * 179.97438 * 4 3 2 6 6 C 1.36219 * 119.48131 * 180.02562 * 5 4 3 7 7 N 1.39914 * 119.22077 * 179.97438 * 6 5 4 8 8 S 1.65592 * 120.00003 * 224.99756 * 7 6 5 9 9 O 1.42109 * 106.40285 * 178.53574 * 8 7 6 10 10 O 1.42094 * 106.40531 * 311.45862 * 8 7 6 11 11 C 1.76202 * 107.21838 * 65.00118 * 8 7 6 12 12 H 1.07998 * 120.00012 * 359.97438 * 11 8 7 13 13 C 1.37882 * 119.99999 * 179.97438 * 11 8 7 14 14 N 1.31511 * 119.99814 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 119.99911 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.47211 * 89.99733 * 15 13 11 17 17 H 1.48500 * 109.47220 * 209.99798 * 15 13 11 18 18 H 1.48501 * 109.47177 * 330.00122 * 15 13 11 19 19 C 1.40234 * 121.56597 * 359.95645 * 6 5 4 20 20 C 1.35530 * 121.76087 * 0.04582 * 19 6 5 21 21 C 1.41183 * 119.70107 * 359.97438 * 20 19 6 22 22 N 1.32139 * 134.55392 * 180.32504 * 21 20 19 23 23 H 1.09001 * 109.47060 * 90.00649 * 1 2 3 24 24 H 1.09004 * 109.47073 * 210.00138 * 1 2 3 25 25 H 1.09000 * 109.47212 * 330.00220 * 1 2 3 26 26 H 1.08003 * 126.05282 * 0.02562 * 3 2 1 27 27 H 1.08003 * 120.25675 * 0.02833 * 5 4 3 28 28 H 0.96999 * 119.99533 * 44.99979 * 7 6 5 29 29 H 0.97006 * 119.99561 * 179.97438 * 14 13 11 30 30 H 1.07997 * 119.12016 * 180.02562 * 19 6 5 31 31 H 1.07999 * 120.15147 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2351 1.0983 0.0000 4 6 3.5560 0.6910 0.0006 5 6 4.8010 1.3566 0.0004 6 6 5.9513 0.6270 0.0007 7 7 7.1821 1.2922 0.0000 8 16 8.3925 0.7931 -1.0140 9 8 9.4834 1.6792 -0.8034 10 8 8.4935 -0.6154 -0.8555 11 6 7.8383 1.0697 -2.6635 12 1 6.8614 1.4948 -2.8409 13 6 8.6518 0.7436 -3.7280 14 7 9.8415 0.2265 -3.5120 15 14 8.0640 1.0362 -5.4767 16 1 8.4617 2.3994 -5.9110 17 1 8.6778 0.0300 -6.3801 18 1 6.5851 0.9117 -5.5292 19 6 5.9311 -0.7752 0.0020 20 6 4.7687 -1.4720 0.0022 21 6 3.5382 -0.7798 0.0015 22 7 2.2685 -1.1459 0.0068 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.8851 2.1200 0.0004 27 1 4.8411 2.4359 0.0002 28 1 7.3264 2.0458 0.5934 29 1 10.4137 -0.0034 -4.2609 30 1 6.8670 -1.3143 0.0025 31 1 4.7835 -2.5519 0.0036 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972122.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:30 Heat of formation + Delta-G solvation = -16.489692 kcal Electronic energy + Delta-G solvation = -19427.502430 eV Core-core repulsion = 16222.092423 eV Total energy + Delta-G solvation = -3205.410007 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.14475 -39.10807 -37.38593 -36.18793 -35.43745 -35.09693 -32.68397 -32.58393 -29.08860 -28.24475 -27.61531 -23.83854 -22.87309 -21.53326 -21.01631 -19.55238 -18.60527 -18.46341 -17.61588 -17.38812 -16.81625 -16.44918 -15.96385 -15.70615 -15.10866 -14.88459 -14.60549 -14.08222 -14.01101 -13.98298 -13.40217 -13.29676 -13.01015 -12.95763 -12.77383 -12.54859 -12.35848 -12.31341 -11.86544 -11.44462 -11.24110 -11.22371 -11.03960 -10.64953 -9.44714 -8.77449 -8.31692 -7.46667 -0.30993 0.23583 0.87857 1.33493 1.34593 1.50026 1.50518 1.57729 2.20908 2.58741 2.82867 2.89911 3.27970 3.69419 3.77665 4.09535 4.21056 4.33489 4.42491 4.47417 4.48588 4.62068 4.73432 4.74630 4.98112 5.17954 5.27774 5.47265 5.50877 5.67163 5.87603 5.95019 6.03347 6.43694 6.67808 6.79302 8.21556 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.005539 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.752053 B = 5054.021892 C = 5671.624867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.323 5.323 3 C 0.101 3.899 4 C -0.218 4.218 5 C -0.055 4.055 6 C 0.104 3.896 7 N -1.058 6.058 8 S 2.717 3.283 9 O -1.036 7.036 10 O -1.027 7.027 11 C -1.034 5.034 12 H 0.116 0.884 13 C 0.073 3.927 14 N -0.891 5.891 15 Si 0.987 3.013 16 H -0.250 1.250 17 H -0.262 1.262 18 H -0.253 1.253 19 C -0.114 4.114 20 C -0.102 4.102 21 C 0.073 3.927 22 N -0.348 5.348 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.133 0.867 26 H 0.240 0.760 27 H 0.158 0.842 28 H 0.424 0.576 29 H 0.299 0.701 30 H 0.140 0.860 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.419 4.733 5.223 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.097 5.097 3 C -0.057 4.057 4 C -0.229 4.229 5 C -0.080 4.080 6 C 0.008 3.992 7 N -0.809 5.809 8 S 2.819 3.181 9 O -1.027 7.027 10 O -1.017 7.017 11 C -1.168 5.168 12 H 0.134 0.866 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.805 3.195 16 H -0.174 1.174 17 H -0.186 1.186 18 H -0.177 1.177 19 C -0.138 4.138 20 C -0.124 4.124 21 C -0.079 4.079 22 N -0.177 5.177 23 H 0.115 0.885 24 H 0.113 0.887 25 H 0.151 0.849 26 H 0.256 0.744 27 H 0.176 0.824 28 H 0.261 0.739 29 H 0.109 0.891 30 H 0.158 0.842 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.391 3.108 5.394 21.320 hybrid contribution 0.651 0.875 -0.851 1.384 sum -19.740 3.984 4.543 20.644 Atomic orbital electron populations 1.22534 0.70583 1.07081 1.05662 1.48976 1.09137 1.03336 1.48270 1.23330 0.88610 0.94952 0.98762 1.19696 0.94229 0.92678 1.16275 1.20326 0.88343 1.00297 0.99080 1.16876 0.85336 0.90630 1.06390 1.53154 1.26430 1.45802 1.55473 1.00161 0.70939 0.72170 0.74816 1.93327 1.53561 1.67776 1.88003 1.93254 1.86062 1.34365 1.87999 1.30800 1.13915 1.57027 1.15032 0.86570 1.25939 0.92775 0.88600 1.06656 1.69975 1.09464 1.35659 1.37175 0.85178 0.79901 0.79799 0.74627 1.17433 1.18601 1.17671 1.21531 1.00117 0.93936 0.98247 1.19786 0.87983 0.99772 1.04870 1.21097 0.92406 0.94347 1.00044 1.77615 1.00911 1.06569 1.32610 0.88500 0.88692 0.84922 0.74394 0.82416 0.73896 0.89053 0.84250 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 11.39 127.77 1.45 2.10 16 2 N -0.32 -6.60 3.95 -367.70 -1.45 -8.05 16 3 C 0.10 1.89 11.51 84.34 0.97 2.86 16 4 C -0.22 -6.37 6.33 -20.24 -0.13 -6.50 16 5 C -0.06 -1.72 9.97 22.52 0.22 -1.49 16 6 C 0.10 4.07 6.15 37.87 0.23 4.30 16 7 N -1.06 -43.37 5.73 -52.00 -0.30 -43.67 16 8 S 2.72 147.34 4.94 -56.49 -0.28 147.06 16 9 O -1.04 -61.83 18.02 -128.00 -2.31 -64.14 16 10 O -1.03 -60.66 14.84 -128.00 -1.90 -62.56 16 11 C -1.03 -57.86 9.68 67.74 0.66 -57.20 16 12 H 0.12 5.98 7.81 -2.91 -0.02 5.96 16 13 C 0.07 4.13 5.46 84.66 0.46 4.59 16 14 N -0.89 -53.37 13.19 21.45 0.28 -53.09 16 15 Si 0.99 42.00 29.54 68.60 2.03 44.03 16 16 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 18 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 19 C -0.11 -4.76 9.02 22.13 0.20 -4.57 16 20 C -0.10 -3.84 10.07 22.37 0.23 -3.62 16 21 C 0.07 2.52 7.49 42.14 0.32 2.84 16 22 N -0.35 -10.82 12.55 -48.67 -0.61 -11.43 16 23 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.13 0.02 8.13 -2.39 -0.02 0.00 16 26 H 0.24 1.58 8.06 -2.91 -0.02 1.55 16 27 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 28 H 0.42 14.24 8.95 -96.75 -0.87 13.38 16 29 H 0.30 16.08 8.31 -92.70 -0.77 15.31 16 30 H 0.14 6.51 5.44 -2.91 -0.02 6.50 16 31 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -85.20 290.26 0.39 -84.80 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.32 Total: 23.73 kcal Atomic # 6 Polarization: -61.30 SS G_CDS: 4.61 Total: -56.68 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -2.08 Total: -116.24 kcal Atomic # 8 Polarization: -122.49 SS G_CDS: -4.21 Total: -126.69 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 147.34 SS G_CDS: -0.28 Total: 147.06 kcal Total: -85.20 0.39 -84.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972122.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.315 kcal (2) G-P(sol) polarization free energy of solvation -85.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds