Wall clock time and date at job start Fri Apr 10 2020 14:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36172 * 126.35042 * 2 1 4 4 N 1.30057 * 110.09038 * 179.85172 * 3 2 1 5 5 C 1.35892 * 109.64873 * 0.41884 * 4 3 2 6 6 C 1.39774 * 133.48192 * 179.77054 * 5 4 3 7 7 C 1.36503 * 119.98817 * 179.97438 * 6 5 4 8 8 C 1.39399 * 120.59548 * 0.02562 * 7 6 5 9 9 N 1.39812 * 119.85724 * 179.97438 * 8 7 6 10 10 S 1.65600 * 120.00334 * 255.17601 * 9 8 7 11 11 O 1.42097 * 106.40585 * 177.77465 * 10 9 8 12 12 O 1.42108 * 106.39984 * 310.69549 * 10 9 8 13 13 C 1.76201 * 107.21792 * 64.23277 * 10 9 8 14 14 H 1.07999 * 119.99866 * 4.87723 * 13 10 9 15 15 C 1.37876 * 119.99803 * 184.87926 * 13 10 9 16 16 N 1.31516 * 120.00236 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99567 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47061 * 90.00309 * 17 15 13 19 19 H 1.48506 * 109.47033 * 210.00023 * 17 15 13 20 20 H 1.48491 * 109.47362 * 330.00168 * 17 15 13 21 21 C 1.38482 * 120.28503 * 359.97438 * 8 7 6 22 22 C 1.38061 * 126.35659 * 180.31387 * 2 1 3 23 23 H 1.08997 * 109.47728 * 269.68594 * 1 2 3 24 24 H 1.09007 * 109.47246 * 149.68631 * 1 2 3 25 25 H 1.09008 * 109.47497 * 29.68814 * 1 2 3 26 26 H 1.08001 * 124.95525 * 0.02562 * 3 2 1 27 27 H 1.08007 * 120.00561 * 0.02562 * 6 5 4 28 28 H 1.08001 * 119.70576 * 179.97438 * 7 6 5 29 29 H 0.97008 * 119.99902 * 75.17497 * 9 8 7 30 30 H 0.97003 * 119.99698 * 179.97438 * 16 15 13 31 31 H 1.08001 * 120.18111 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2721 1.0967 0.0000 4 7 3.5207 0.7326 0.0032 5 6 3.6010 -0.6239 -0.0039 6 6 4.6703 -1.5241 -0.0085 7 6 4.4308 -2.8679 -0.0151 8 6 3.1250 -3.3559 -0.0178 9 7 2.8975 -4.7354 -0.0251 10 16 2.4009 -5.4854 -1.4155 11 8 2.3109 -6.8711 -1.1138 12 8 1.3078 -4.7257 -1.9128 13 6 3.7011 -5.3158 -2.5925 14 1 4.6371 -4.8624 -2.3016 15 6 3.5234 -5.7620 -3.8850 16 7 2.3833 -6.3136 -4.2394 17 14 4.9021 -5.5828 -5.1326 18 1 5.7620 -6.7928 -5.0972 19 1 4.3230 -5.4266 -6.4912 20 1 5.7170 -4.3865 -4.8014 21 6 2.0522 -2.4802 -0.0134 22 6 2.2834 -1.1118 -0.0061 23 1 -0.3634 -0.0056 1.0276 24 1 -0.3634 -0.8872 -0.5187 25 1 -0.3634 0.8928 -0.5090 26 1 1.9259 2.1198 0.0004 27 1 5.6858 -1.1564 -0.0060 28 1 5.2605 -3.5594 -0.0190 29 1 3.0306 -5.2532 0.7844 30 1 2.2583 -6.6271 -5.1488 31 1 1.0412 -2.8602 -0.0159 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192979119.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:42 Heat of formation + Delta-G solvation = -11.771248 kcal Electronic energy + Delta-G solvation = -19690.178567 eV Core-core repulsion = 16484.973167 eV Total energy + Delta-G solvation = -3205.205400 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.88903 -37.75758 -35.25397 -34.35066 -34.02106 -33.23098 -32.90726 -30.22838 -27.63616 -26.87319 -26.13100 -22.92989 -21.73408 -20.48565 -19.09581 -17.74191 -17.36021 -16.92730 -16.30781 -15.86438 -15.63629 -14.97128 -14.47112 -14.15423 -13.78994 -13.61447 -13.47031 -13.19635 -12.73251 -12.50333 -12.02999 -11.48282 -11.44954 -11.25292 -11.19924 -10.60137 -10.56472 -10.36184 -10.26026 -10.17612 -9.86324 -9.34795 -9.24475 -8.75468 -8.05147 -7.70955 -6.71042 -5.32292 1.16462 1.76855 2.24812 2.73561 2.97304 3.08199 3.14738 3.22378 4.06157 4.11657 4.41464 4.57185 4.64343 4.68947 4.83433 5.08454 5.28035 5.39823 5.55583 5.63605 5.65644 5.81597 5.83366 6.26075 6.44900 6.58551 6.62603 6.77260 6.90678 7.12577 7.26257 7.33084 7.85261 7.97465 8.02146 8.88880 10.23280 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.006119 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.738725 B = 4574.970413 C = 4952.015517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.497 5.497 3 C 0.249 3.751 4 N -0.497 5.497 5 C 0.038 3.962 6 C -0.062 4.062 7 C -0.120 4.120 8 C 0.181 3.819 9 N -1.084 6.084 10 S 2.706 3.294 11 O -1.004 7.004 12 O -0.995 6.995 13 C -1.013 5.013 14 H 0.105 0.895 15 C 0.134 3.866 16 N -0.846 5.846 17 Si 0.919 3.081 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.261 1.261 21 C -0.102 4.102 22 C 0.057 3.943 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.210 0.790 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.411 0.589 30 H 0.291 0.709 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 11.888 8.316 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.188 5.188 3 C -0.036 4.036 4 N -0.216 5.216 5 C -0.080 4.080 6 C -0.082 4.082 7 C -0.143 4.143 8 C 0.084 3.916 9 N -0.834 5.834 10 S 2.808 3.192 11 O -0.994 6.994 12 O -0.985 6.985 13 C -1.147 5.147 14 H 0.123 0.877 15 C -0.084 4.084 16 N -0.476 5.476 17 Si 0.743 3.257 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.185 1.185 21 C -0.126 4.126 22 C -0.052 4.052 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.227 0.773 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.246 0.754 30 H 0.101 0.899 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.429 11.943 7.946 14.416 hybrid contribution 0.428 -0.410 -0.640 0.872 sum -1.001 11.533 7.306 13.690 Atomic orbital electron populations 1.21988 0.76225 1.04959 1.03240 1.45246 1.07205 1.05487 1.60910 1.25227 0.85324 0.93148 0.99939 1.70392 1.18233 1.11160 1.21834 1.19031 0.92232 0.90011 1.06721 1.19806 0.97274 0.90976 1.00184 1.20986 0.96664 0.95056 1.01553 1.16783 0.91601 0.83186 1.00037 1.53856 1.87439 1.12372 1.29757 1.00816 0.75192 0.71878 0.71350 1.93390 1.88294 1.33112 1.84608 1.93359 1.54390 1.72283 1.78466 1.30451 1.19434 1.54247 1.10585 0.87683 1.24734 0.96258 0.89416 0.98007 1.69899 1.23606 1.32411 1.21692 0.86171 0.80930 0.79762 0.78821 1.19113 1.20004 1.18464 1.20247 1.00096 0.88620 1.03645 1.18636 0.91041 0.89009 1.06554 0.90917 0.89314 0.89511 0.77341 0.85195 0.84619 0.75411 0.89903 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 11.18 59.85 0.67 1.36 16 2 N -0.50 -6.60 3.21 -123.17 -0.40 -7.00 16 3 C 0.25 3.06 12.51 -89.70 -1.12 1.94 16 4 N -0.50 -7.93 11.28 -12.00 -0.14 -8.06 16 5 C 0.04 0.66 7.23 -84.64 -0.61 0.05 16 6 C -0.06 -1.01 10.04 -39.63 -0.40 -1.41 16 7 C -0.12 -2.03 9.88 -39.78 -0.39 -2.43 16 8 C 0.18 3.44 5.80 -83.70 -0.49 2.95 16 9 N -1.08 -21.57 5.69 32.45 0.18 -21.38 16 10 S 2.71 70.93 5.02 -107.50 -0.54 70.39 16 11 O -1.00 -28.83 18.02 -57.17 -1.03 -29.86 16 12 O -1.00 -28.43 16.94 -57.17 -0.97 -29.40 16 13 C -1.01 -27.81 9.66 30.60 0.30 -27.52 16 14 H 0.10 2.64 7.81 -52.49 -0.41 2.23 16 15 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 16 N -0.85 -24.82 13.10 55.43 0.73 -24.09 16 17 Si 0.92 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 21 C -0.10 -1.89 9.27 -39.29 -0.36 -2.25 16 22 C 0.06 0.96 6.87 -84.00 -0.58 0.39 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.21 1.45 8.06 -52.49 -0.42 1.02 16 27 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 28 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.41 6.77 8.96 -34.47 -0.31 6.47 16 30 H 0.29 7.66 8.31 -40.82 -0.34 7.33 16 31 H 0.13 2.39 7.93 -52.49 -0.42 1.97 16 LS Contribution 293.63 15.07 4.43 4.43 Total: -1.00 -37.49 293.63 -8.64 -46.13 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -2.81 Total: 6.39 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -3.08 Total: -23.28 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.38 Total: -60.53 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -2.00 Total: -59.26 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 70.93 SS G_CDS: -0.54 Total: 70.39 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -37.49 -8.64 -46.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192979119.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.360 kcal (2) G-P(sol) polarization free energy of solvation -37.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds