Wall clock time and date at job start Fri Apr 10 2020 14:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36172 * 126.35042 * 2 1 4 4 N 1.30057 * 110.09038 * 179.85172 * 3 2 1 5 5 C 1.35892 * 109.64873 * 0.41884 * 4 3 2 6 6 C 1.39774 * 133.48192 * 179.77054 * 5 4 3 7 7 C 1.36503 * 119.98817 * 179.97438 * 6 5 4 8 8 C 1.39399 * 120.59548 * 0.02562 * 7 6 5 9 9 N 1.39812 * 119.85724 * 179.97438 * 8 7 6 10 10 S 1.65600 * 120.00334 * 255.17601 * 9 8 7 11 11 O 1.42097 * 106.40585 * 177.77465 * 10 9 8 12 12 O 1.42108 * 106.39984 * 310.69549 * 10 9 8 13 13 C 1.76201 * 107.21792 * 64.23277 * 10 9 8 14 14 H 1.07999 * 119.99866 * 4.87723 * 13 10 9 15 15 C 1.37876 * 119.99803 * 184.87926 * 13 10 9 16 16 N 1.31516 * 120.00236 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99567 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47061 * 90.00309 * 17 15 13 19 19 H 1.48506 * 109.47033 * 210.00023 * 17 15 13 20 20 H 1.48491 * 109.47362 * 330.00168 * 17 15 13 21 21 C 1.38482 * 120.28503 * 359.97438 * 8 7 6 22 22 C 1.38061 * 126.35659 * 180.31387 * 2 1 3 23 23 H 1.08997 * 109.47728 * 269.68594 * 1 2 3 24 24 H 1.09007 * 109.47246 * 149.68631 * 1 2 3 25 25 H 1.09008 * 109.47497 * 29.68814 * 1 2 3 26 26 H 1.08001 * 124.95525 * 0.02562 * 3 2 1 27 27 H 1.08007 * 120.00561 * 0.02562 * 6 5 4 28 28 H 1.08001 * 119.70576 * 179.97438 * 7 6 5 29 29 H 0.97008 * 119.99902 * 75.17497 * 9 8 7 30 30 H 0.97003 * 119.99698 * 179.97438 * 16 15 13 31 31 H 1.08001 * 120.18111 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2721 1.0967 0.0000 4 7 3.5207 0.7326 0.0032 5 6 3.6010 -0.6239 -0.0039 6 6 4.6703 -1.5241 -0.0085 7 6 4.4308 -2.8679 -0.0151 8 6 3.1250 -3.3559 -0.0178 9 7 2.8975 -4.7354 -0.0251 10 16 2.4009 -5.4854 -1.4155 11 8 2.3109 -6.8711 -1.1138 12 8 1.3078 -4.7257 -1.9128 13 6 3.7011 -5.3158 -2.5925 14 1 4.6371 -4.8624 -2.3016 15 6 3.5234 -5.7620 -3.8850 16 7 2.3833 -6.3136 -4.2394 17 14 4.9021 -5.5828 -5.1326 18 1 5.7620 -6.7928 -5.0972 19 1 4.3230 -5.4266 -6.4912 20 1 5.7170 -4.3865 -4.8014 21 6 2.0522 -2.4802 -0.0134 22 6 2.2834 -1.1118 -0.0061 23 1 -0.3634 -0.0056 1.0276 24 1 -0.3634 -0.8872 -0.5187 25 1 -0.3634 0.8928 -0.5090 26 1 1.9259 2.1198 0.0004 27 1 5.6858 -1.1564 -0.0060 28 1 5.2605 -3.5594 -0.0190 29 1 3.0306 -5.2532 0.7844 30 1 2.2583 -6.6271 -5.1488 31 1 1.0412 -2.8602 -0.0159 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192979119.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:42 Heat of formation + Delta-G solvation = -40.133486 kcal Electronic energy + Delta-G solvation = -19691.408446 eV Core-core repulsion = 16484.973167 eV Total energy + Delta-G solvation = -3206.435279 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.02681 -39.10778 -37.41026 -36.19750 -35.55020 -35.16899 -34.38059 -31.45492 -28.95433 -28.26306 -27.77794 -24.14057 -23.04961 -21.61175 -21.09971 -19.52445 -18.83004 -18.33225 -18.01148 -17.28855 -16.91167 -16.66313 -16.06920 -15.79259 -15.36373 -15.09633 -14.76561 -14.09975 -14.01445 -13.89444 -13.44712 -13.29919 -13.01692 -12.98836 -12.77291 -12.56111 -12.45637 -12.31778 -12.19195 -11.31623 -11.24803 -11.23098 -10.94619 -10.64749 -9.28874 -9.00984 -8.75889 -7.48232 -0.17392 0.30613 0.54268 1.33831 1.34186 1.50369 1.74782 1.84427 2.20207 2.57555 2.80449 2.87963 3.38568 3.64256 3.71433 3.92132 4.08915 4.27560 4.36402 4.44413 4.48554 4.54732 4.65197 4.72870 4.93070 5.19307 5.28225 5.36131 5.48888 5.55540 5.80732 5.92609 6.27753 6.35334 6.78139 6.89112 8.20081 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.006119 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.738725 B = 4574.970413 C = 4952.015517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.498 5.498 3 C 0.274 3.726 4 N -0.532 5.532 5 C 0.025 3.975 6 C -0.064 4.064 7 C -0.123 4.123 8 C 0.149 3.851 9 N -1.066 6.066 10 S 2.714 3.286 11 O -1.039 7.039 12 O -1.028 7.028 13 C -1.033 5.033 14 H 0.122 0.878 15 C 0.073 3.927 16 N -0.893 5.893 17 Si 0.986 3.014 18 H -0.251 1.251 19 H -0.263 1.263 20 H -0.249 1.249 21 C -0.113 4.113 22 C 0.035 3.965 23 H 0.093 0.907 24 H 0.069 0.931 25 H 0.125 0.875 26 H 0.266 0.734 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.425 0.575 30 H 0.299 0.701 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 14.389 8.185 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.188 5.188 3 C -0.011 4.011 4 N -0.251 5.251 5 C -0.093 4.093 6 C -0.084 4.084 7 C -0.146 4.146 8 C 0.052 3.948 9 N -0.820 5.820 10 S 2.817 3.183 11 O -1.030 7.030 12 O -1.018 7.018 13 C -1.167 5.167 14 H 0.140 0.860 15 C -0.140 4.140 16 N -0.525 5.525 17 Si 0.804 3.196 18 H -0.175 1.175 19 H -0.188 1.188 20 H -0.172 1.172 21 C -0.137 4.137 22 C -0.076 4.076 23 H 0.112 0.888 24 H 0.088 0.912 25 H 0.144 0.856 26 H 0.282 0.718 27 H 0.172 0.828 28 H 0.170 0.830 29 H 0.263 0.737 30 H 0.109 0.891 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.449 14.434 7.843 16.434 hybrid contribution 0.010 -1.002 -0.487 1.114 sum -0.439 13.433 7.356 15.321 Atomic orbital electron populations 1.22323 0.73737 1.05992 1.04965 1.45601 1.08755 1.04543 1.59886 1.26367 0.84226 0.94756 0.95781 1.70423 1.20348 1.10141 1.24235 1.19423 0.92558 0.91088 1.06232 1.20094 0.98410 0.90574 0.99323 1.21118 0.96145 0.95844 1.01519 1.17017 0.92859 0.82195 1.02687 1.53067 1.87191 1.13197 1.28589 1.00242 0.74963 0.71071 0.72030 1.93330 1.88785 1.35419 1.85422 1.93306 1.55977 1.72703 1.79810 1.30817 1.20334 1.54255 1.11307 0.85997 1.25961 0.98998 0.88634 1.00439 1.69987 1.25939 1.33734 1.22807 0.85189 0.77582 0.80651 0.76199 1.17543 1.18772 1.17182 1.20255 0.99574 0.89748 1.04101 1.18727 0.92216 0.89321 1.07294 0.88835 0.91188 0.85631 0.71841 0.82822 0.82959 0.73695 0.89117 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 11.18 127.77 1.43 2.50 16 2 N -0.50 -12.08 3.21 -543.59 -1.74 -13.82 16 3 C 0.27 5.74 12.51 180.03 2.25 7.99 16 4 N -0.53 -15.68 11.28 -191.86 -2.16 -17.84 16 5 C 0.03 0.84 7.23 39.44 0.29 1.13 16 6 C -0.06 -2.01 10.04 22.24 0.22 -1.79 16 7 C -0.12 -4.12 9.88 22.14 0.22 -3.91 16 8 C 0.15 5.72 5.80 38.21 0.22 5.94 16 9 N -1.07 -43.38 5.69 -51.24 -0.29 -43.68 16 10 S 2.71 146.40 5.02 -56.49 -0.28 146.12 16 11 O -1.04 -61.70 18.02 -128.00 -2.31 -64.00 16 12 O -1.03 -60.98 16.94 -128.00 -2.17 -63.15 16 13 C -1.03 -57.12 9.66 67.73 0.65 -56.47 16 14 H 0.12 6.09 7.81 -2.91 -0.02 6.06 16 15 C 0.07 4.06 5.46 84.65 0.46 4.52 16 16 N -0.89 -53.35 13.10 21.45 0.28 -53.07 16 17 Si 0.99 41.68 29.54 68.60 2.03 43.70 16 18 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 20 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 21 C -0.11 -4.25 9.27 22.46 0.21 -4.05 16 22 C 0.03 1.16 6.87 38.84 0.27 1.43 16 23 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.13 0.94 8.14 -2.38 -0.02 0.93 16 26 H 0.27 2.14 8.06 -2.91 -0.02 2.11 16 27 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 28 H 0.15 4.41 8.06 -2.91 -0.02 4.38 16 29 H 0.42 14.37 8.96 -96.74 -0.87 13.50 16 30 H 0.30 16.02 8.31 -92.71 -0.77 15.25 16 31 H 0.12 4.64 7.93 -2.91 -0.02 4.62 16 Total: -1.00 -83.45 293.63 -0.12 -83.57 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.31 Total: 24.87 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 6.22 Total: -42.69 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -3.92 Total: -128.41 kcal Atomic # 8 Polarization: -122.68 SS G_CDS: -4.47 Total: -127.15 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 146.40 SS G_CDS: -0.28 Total: 146.12 kcal Total: -83.45 -0.12 -83.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192979119.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.436 kcal (2) G-P(sol) polarization free energy of solvation -83.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds