Wall clock time and date at job start Fri Apr 10 2020 14:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46812 * 239.88250 * 3 2 1 5 5 N 1.46498 * 109.46967 * 180.02562 * 4 3 2 6 6 C 1.46504 * 120.00119 * 88.47478 * 5 4 3 7 7 C 1.50709 * 109.46873 * 90.18158 * 6 5 4 8 8 H 1.07996 * 119.99560 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99731 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00294 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99656 * 179.97438 * 9 7 6 12 12 H 1.48490 * 109.47248 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46839 * 120.00348 * 11 9 7 14 14 H 1.48504 * 109.47341 * 240.00054 * 11 9 7 15 15 C 1.34776 * 119.99881 * 268.47731 * 5 4 3 16 16 O 1.21693 * 120.00018 * 6.17920 * 15 5 4 17 17 C 1.46677 * 119.99957 * 186.17844 * 15 5 4 18 18 C 1.37896 * 126.22028 * 187.48120 * 17 15 5 19 19 C 1.39892 * 107.09022 * 179.88239 * 18 17 15 20 20 Cl 1.73604 * 126.07048 * 180.14529 * 19 18 17 21 21 C 1.35516 * 107.85113 * 0.38804 * 19 18 17 22 22 N 1.35632 * 108.85308 * 359.75650 * 21 19 18 23 23 H 0.97000 * 125.67153 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.46848 * 119.88042 * 3 2 1 25 25 H 1.09002 * 109.46793 * 359.87864 * 3 2 1 26 26 H 1.08998 * 109.47584 * 60.00243 * 4 3 2 27 27 H 1.09010 * 109.47112 * 299.99774 * 4 3 2 28 28 H 1.08996 * 109.47312 * 210.17995 * 6 5 4 29 29 H 1.08997 * 109.47023 * 330.18011 * 6 5 4 30 30 H 0.97004 * 119.99978 * 179.97438 * 10 9 7 31 31 H 1.07997 * 126.45346 * 0.02562 * 18 17 15 32 32 H 1.07997 * 125.57109 * 179.78806 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1177 0.7247 1.2478 5 7 4.5826 0.7259 1.2475 6 6 5.3142 1.8067 0.5819 7 6 5.5685 2.9207 1.5647 8 1 5.2204 2.8320 2.5832 9 6 6.2464 4.0523 1.1637 10 7 6.6707 4.1599 -0.0765 11 14 6.5610 5.4332 2.3816 12 1 5.9862 5.0696 3.7016 13 1 8.0240 5.6464 2.5211 14 1 5.9235 6.6813 1.8905 15 6 5.2574 -0.2673 1.8595 16 8 4.6551 -1.2220 2.3142 17 6 6.7178 -0.1976 1.9776 18 6 7.5462 -1.1966 2.4436 19 6 8.8553 -0.7071 2.3824 20 17 10.2903 -1.5652 2.8494 21 6 8.8036 0.5579 1.8990 22 7 7.5097 0.8790 1.6491 23 1 7.1951 1.7264 1.2971 24 1 2.9711 0.5128 -0.8910 25 1 2.9718 -1.0269 0.0022 26 1 2.7546 0.2126 2.1388 27 1 2.7538 1.7523 1.2456 28 1 6.2654 1.4263 0.2098 29 1 4.7232 2.1857 -0.2519 30 1 7.1473 4.9562 -0.3587 31 1 7.2420 -2.1738 2.7884 32 1 9.6537 1.2043 1.7385 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049377390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:26 Heat of formation + Delta-G solvation = 24.735228 kcal Electronic energy + Delta-G solvation = -19402.852002 eV Core-core repulsion = 16197.185936 eV Total energy + Delta-G solvation = -3205.666067 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.38106 -40.20092 -37.93117 -37.28104 -36.97276 -34.95390 -32.90955 -31.54514 -30.00789 -29.21834 -25.70449 -25.16877 -22.59800 -21.49921 -20.87414 -19.04249 -18.55354 -18.33575 -17.35707 -16.87207 -16.31771 -16.09058 -15.76663 -15.19908 -15.12979 -14.61594 -14.45310 -14.29060 -14.18903 -13.74000 -13.63687 -13.51961 -13.21658 -12.98010 -12.78320 -12.72171 -12.49744 -12.24631 -11.84904 -11.76757 -11.68377 -11.06437 -10.71959 -9.82009 -9.59440 -9.09506 -8.34441 -6.52434 0.55870 1.35817 1.39084 1.46904 1.53259 1.59556 1.65527 1.78543 2.10783 2.33032 2.41448 2.68337 2.96892 3.15884 3.75739 4.11127 4.14872 4.27625 4.37755 4.53594 4.64898 4.72765 4.88428 4.99858 5.02040 5.11446 5.54302 5.59629 5.65435 5.83623 5.92952 6.39026 6.54818 6.64771 6.68511 7.16527 7.25613 8.67154 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.007048 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.511430 B = 3971.950541 C = 6119.087300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.245 3.755 3 C -0.032 4.032 4 C 0.125 3.875 5 N -0.593 5.593 6 C 0.225 3.775 7 C -0.565 4.565 8 H 0.058 0.942 9 C 0.041 3.959 10 N -0.898 5.898 11 Si 0.942 3.058 12 H -0.276 1.276 13 H -0.273 1.273 14 H -0.279 1.279 15 C 0.588 3.412 16 O -0.571 6.571 17 C -0.054 4.054 18 C -0.117 4.117 19 C -0.139 4.139 20 Cl -0.048 7.048 21 C 0.030 3.970 22 N -0.512 5.512 23 H 0.450 0.550 24 H 0.132 0.868 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.276 0.724 31 H 0.155 0.845 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.827 -4.348 0.261 6.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.072 4.072 3 C -0.073 4.073 4 C 0.000 4.000 5 N -0.322 5.322 6 C 0.104 3.896 7 C -0.603 4.603 8 H 0.076 0.924 9 C -0.164 4.164 10 N -0.534 5.534 11 Si 0.768 3.232 12 H -0.200 1.200 13 H -0.198 1.198 14 H -0.205 1.205 15 C 0.378 3.622 16 O -0.453 6.453 17 C -0.170 4.170 18 C -0.144 4.144 19 C -0.172 4.172 20 Cl -0.020 7.020 21 C -0.111 4.111 22 N -0.120 5.120 23 H 0.308 0.692 24 H 0.150 0.850 25 H 0.139 0.861 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.880 -4.553 0.285 5.395 hybrid contribution 0.639 1.268 0.428 1.483 sum 3.518 -3.285 0.713 4.866 Atomic orbital electron populations 1.81213 1.14295 1.10860 1.10340 1.29190 0.95043 0.91358 0.91587 1.19714 0.80139 1.05518 1.01911 1.21265 0.79161 1.02029 0.97497 1.47950 1.06616 1.24013 1.53645 1.19667 0.92760 0.83995 0.93185 1.21725 1.38127 1.02672 0.97815 0.92357 1.25485 0.94873 0.99509 0.96510 1.69959 1.36891 1.29954 1.16626 0.85730 0.78390 0.79654 0.79471 1.20045 1.19831 1.20495 1.17175 0.85317 0.82118 0.77575 1.90742 1.69253 1.33755 1.51510 1.20299 0.91448 0.90803 1.14409 1.21135 0.90156 0.99481 1.03651 1.19934 0.88208 0.94822 1.14213 1.98283 1.35985 1.76398 1.91344 1.22297 0.88430 0.96647 1.03735 1.44228 1.05818 1.16071 1.45932 0.69249 0.85021 0.86091 0.90129 0.88827 0.94415 0.93109 0.91430 0.82772 0.78710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.40 18.54 20.01 0.37 -15.03 16 2 C 0.25 6.42 15.43 89.44 1.38 7.80 16 3 C -0.03 -0.72 6.03 28.79 0.17 -0.54 16 4 C 0.12 3.56 5.33 86.38 0.46 4.02 16 5 N -0.59 -20.41 2.46 -830.85 -2.04 -22.45 16 6 C 0.23 8.56 4.67 85.64 0.40 8.96 16 7 C -0.56 -24.01 7.43 25.60 0.19 -23.82 16 8 H 0.06 2.64 7.81 -2.91 -0.02 2.61 16 9 C 0.04 1.76 5.10 84.65 0.43 2.19 16 10 N -0.90 -40.21 13.29 21.45 0.28 -39.93 16 11 Si 0.94 36.00 29.54 68.60 2.03 38.03 16 12 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 13 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 14 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 15 C 0.59 22.04 7.62 86.45 0.66 22.70 16 16 O -0.57 -22.93 16.51 -4.32 -0.07 -23.00 16 17 C -0.05 -1.98 6.62 40.36 0.27 -1.72 16 18 C -0.12 -3.93 10.65 22.59 0.24 -3.69 16 19 C -0.14 -4.26 6.66 22.04 0.15 -4.11 16 20 Cl -0.05 -1.26 29.30 -2.72 -0.08 -1.34 16 21 C 0.03 0.93 11.87 83.48 0.99 1.92 16 22 N -0.51 -18.28 4.86 -183.50 -0.89 -19.17 16 23 H 0.45 17.26 3.37 -92.71 -0.31 16.95 16 24 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.08 2.39 7.47 -2.39 -0.02 2.38 16 27 H 0.09 2.61 8.08 -2.38 -0.02 2.60 16 28 H 0.04 1.51 5.14 -2.39 -0.01 1.50 16 29 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 30 H 0.28 11.85 8.31 -92.71 -0.77 11.08 16 31 H 0.15 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.20 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -50.84 303.90 5.80 -45.04 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.86 Total: 24.13 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 5.34 Total: 13.72 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -2.28 Total: -96.58 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.07 Total: -23.00 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -50.84 5.80 -45.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049377390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.779 kcal (2) G-P(sol) polarization free energy of solvation -50.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds