Wall clock time and date at job start Fri Apr 10 2020 14:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86795 * 119.99958 * 2 1 4 4 H 1.48504 * 109.47368 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47199 * 299.99837 * 3 2 1 6 6 H 1.48497 * 109.47413 * 59.99779 * 3 2 1 7 7 C 1.38756 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99956 * 180.02562 * 7 2 1 9 9 O 1.34915 * 120.00029 * 359.97438 * 7 2 1 10 10 C 1.34312 * 117.00127 * 180.02562 * 9 7 2 11 11 O 1.21214 * 119.99761 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00367 * 179.97438 * 10 9 7 13 13 H 1.09005 * 109.39504 * 59.82831 * 12 10 9 14 14 C 1.53072 * 109.33053 * 179.61298 * 12 10 9 15 15 C 1.53348 * 108.42196 * 168.98792 * 14 12 10 16 16 C 1.52926 * 108.67471 * 292.47145 * 15 14 12 17 17 H 1.09004 * 109.12993 * 290.54584 * 16 15 14 18 18 C 1.52997 * 109.30070 * 171.06651 * 16 15 14 19 19 F 1.39905 * 109.47157 * 298.96039 * 18 16 15 20 20 F 1.39900 * 109.47010 * 178.96431 * 18 16 15 21 21 F 1.39897 * 109.47422 * 58.96122 * 18 16 15 22 22 N 1.45753 * 110.48754 * 50.75061 * 16 15 14 23 23 C 1.33356 * 124.10699 * 340.92686 * 22 16 15 24 24 O 1.21280 * 118.24327 * 182.23889 * 23 22 16 25 25 H 0.96996 * 120.00323 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.67641 * 288.71826 * 14 12 10 27 27 H 1.08999 * 109.67348 * 49.22051 * 14 12 10 28 28 H 1.08995 * 109.60533 * 172.71161 * 15 14 12 29 29 H 1.09003 * 109.60553 * 52.22222 * 15 14 12 30 30 H 0.96999 * 117.94380 * 160.90363 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3964 -1.2126 6 1 1.8896 2.3965 1.2124 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0016 10 6 2.0651 -3.4965 0.0026 11 8 3.2756 -3.4331 0.0030 12 6 1.3810 -4.8393 0.0044 13 1 0.7559 -4.9283 -0.8842 14 6 2.4380 -5.9465 -0.0045 15 6 1.7414 -7.2837 0.2753 16 6 1.2256 -7.2753 1.7149 17 1 2.0738 -7.3126 2.3985 18 6 0.3391 -8.5015 1.9416 19 9 -0.7560 -8.4524 1.0723 20 9 -0.1157 -8.5099 3.2645 21 9 1.0784 -9.6634 1.6952 22 7 0.4519 -6.0672 1.9725 23 6 0.5240 -4.9608 1.2315 24 8 -0.1379 -4.0014 1.5667 25 1 -0.4850 0.8400 -0.0004 26 1 2.9234 -5.9826 -0.9797 27 1 3.1812 -5.7505 0.7683 28 1 2.4518 -8.1001 0.1461 29 1 0.9051 -7.4113 -0.4120 30 1 -0.1536 -6.0682 2.7303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914673136.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:40 Heat of formation + Delta-G solvation = -295.251761 kcal Electronic energy + Delta-G solvation = -22691.935993 eV Core-core repulsion = 18457.535593 eV Total energy + Delta-G solvation = -4234.400400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.17950 -48.68464 -48.63606 -42.04176 -40.50800 -38.09198 -37.24295 -34.44869 -34.23500 -31.85150 -28.68128 -27.14957 -24.53492 -24.04798 -22.53137 -20.45011 -19.90966 -19.70290 -19.39871 -19.24033 -18.69901 -18.06489 -17.26258 -16.84486 -16.21304 -16.18367 -15.72373 -15.51413 -15.49053 -15.18475 -15.07526 -14.87499 -14.78746 -14.72080 -14.52479 -13.83995 -13.63422 -13.28872 -13.05457 -12.64819 -12.53377 -12.35159 -12.18646 -12.10443 -11.92895 -11.17761 -10.99995 -10.69766 -10.54012 -8.52443 -6.33465 1.09922 1.26414 1.33299 1.45274 1.53014 1.65109 1.87980 2.11800 2.56346 2.74811 2.85286 2.94565 3.07932 3.41402 3.48455 3.55561 3.93227 4.10228 4.15576 4.56875 4.65831 4.84092 4.91209 5.14553 5.17644 5.51159 5.79291 5.83714 6.60532 6.90246 6.93349 7.76787 8.68079 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.040121 B = 0.004341 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.713336 B = 6448.194474 C = 6819.826434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.007 4.007 3 Si 1.021 2.979 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.263 1.263 7 C -0.424 4.424 8 H 0.086 0.914 9 O -0.224 6.224 10 C 0.400 3.600 11 O -0.570 6.570 12 C -0.086 4.086 13 H 0.149 0.851 14 C -0.091 4.091 15 C -0.128 4.128 16 C 0.099 3.901 17 H 0.150 0.850 18 C 0.451 3.549 19 F -0.183 7.183 20 F -0.184 7.184 21 F -0.167 7.167 22 N -0.704 5.704 23 C 0.532 3.468 24 O -0.557 6.557 25 H 0.277 0.723 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.097 0.903 30 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 -19.738 2.056 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.208 4.208 3 Si 0.839 3.161 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.188 1.188 7 C -0.499 4.499 8 H 0.104 0.896 9 O -0.131 6.131 10 C 0.247 3.753 11 O -0.469 6.469 12 C -0.108 4.108 13 H 0.167 0.833 14 C -0.129 4.129 15 C -0.165 4.165 16 C -0.008 4.008 17 H 0.168 0.832 18 C 0.396 3.604 19 F -0.165 7.165 20 F -0.166 7.166 21 F -0.148 7.148 22 N -0.359 5.359 23 C 0.318 3.682 24 O -0.433 6.433 25 H 0.087 0.913 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.163 0.837 29 H 0.116 0.884 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.427 -19.077 2.047 19.339 hybrid contribution -0.397 0.645 0.465 0.888 sum 2.031 -18.432 2.512 18.713 Atomic orbital electron populations 1.70160 1.07966 1.29192 1.46237 1.26673 0.96827 1.02712 0.94585 0.84534 0.77917 0.74444 0.79180 1.18330 1.18163 1.18804 1.21567 0.92217 0.81333 1.54827 0.89646 1.84007 1.39971 1.14020 1.75066 1.23457 0.86388 0.87732 0.77748 1.90522 1.16085 1.88309 1.51961 1.21130 0.99311 0.91178 0.99210 0.83335 1.21516 0.95414 0.89744 1.06178 1.22134 1.03477 0.99329 0.91560 1.22534 0.93673 0.80374 1.04200 0.83246 1.20772 0.79930 0.85844 0.73861 1.93215 1.56839 1.96592 1.69831 1.93208 1.90072 1.96722 1.36563 1.93224 1.76373 1.51238 1.93958 1.45215 1.46016 1.12444 1.32244 1.19785 0.81837 0.82157 0.84452 1.90960 1.44880 1.37276 1.70160 0.91340 0.87358 0.90175 0.83704 0.88418 0.75217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.43 13.67 21.63 0.30 -56.13 16 2 C -0.01 -0.44 5.49 84.88 0.47 0.03 16 3 Si 1.02 44.90 29.55 68.60 2.03 46.93 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.42 -26.71 9.65 67.94 0.66 -26.05 16 8 H 0.09 5.36 6.86 -2.91 -0.02 5.34 16 9 O -0.22 -13.89 8.71 20.63 0.18 -13.71 16 10 C 0.40 20.21 7.09 71.24 0.50 20.71 16 11 O -0.57 -30.09 15.02 20.76 0.31 -29.78 16 12 C -0.09 -3.00 2.86 -12.43 -0.04 -3.04 16 13 H 0.15 4.58 8.14 -2.38 -0.02 4.56 16 14 C -0.09 -2.06 4.78 30.74 0.15 -1.91 16 15 C -0.13 -1.72 5.03 30.69 0.15 -1.56 16 16 C 0.10 1.53 3.04 45.11 0.14 1.66 16 17 H 0.15 1.58 8.14 -2.38 -0.02 1.56 16 18 C 0.45 6.91 2.79 71.98 0.20 7.11 16 19 F -0.18 -3.44 16.60 44.97 0.75 -2.69 16 20 F -0.18 -3.17 16.87 44.97 0.76 -2.42 16 21 F -0.17 -2.24 16.92 44.97 0.76 -1.48 16 22 N -0.70 -17.40 5.04 -446.64 -2.25 -19.65 16 23 C 0.53 19.32 7.28 87.71 0.64 19.96 16 24 O -0.56 -27.69 16.43 13.36 0.22 -27.47 16 25 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 26 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.08 1.98 7.71 -2.39 -0.02 1.96 16 28 H 0.14 0.91 8.03 -2.39 -0.02 0.89 16 29 H 0.10 1.25 7.58 -2.39 -0.02 1.23 16 30 H 0.41 9.68 8.27 -92.71 -0.77 8.91 16 Total: -1.00 -84.62 279.33 6.37 -78.25 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.45 Total: 11.24 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 2.87 Total: 16.91 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -1.96 Total: -75.78 kcal Atomic # 8 Polarization: -71.68 SS G_CDS: 0.71 Total: -70.97 kcal Atomic # 9 Polarization: -8.85 SS G_CDS: 2.27 Total: -6.58 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -84.62 6.37 -78.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914673136.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.000 kcal (2) G-P(sol) polarization free energy of solvation -84.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -301.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -295.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds