Wall clock time and date at job start Fri Apr 10 2020 14:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86802 * 120.00052 * 2 1 4 4 H 1.48496 * 109.46996 * 239.99958 * 3 2 1 5 5 H 1.48501 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47037 * 120.00342 * 3 2 1 7 7 C 1.38756 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 180.02562 * 7 2 1 9 9 O 1.34921 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.34314 * 116.99925 * 180.02562 * 9 7 2 11 11 O 1.21216 * 119.99658 * 359.72318 * 10 9 7 12 12 C 1.50700 * 120.00115 * 180.02562 * 10 9 7 13 13 H 1.08998 * 109.39820 * 299.82998 * 12 10 9 14 14 C 1.53071 * 109.40210 * 179.97438 * 12 10 9 15 15 C 1.53341 * 108.42433 * 288.77444 * 14 12 10 16 16 C 1.52920 * 108.67395 * 292.46651 * 15 14 12 17 17 H 1.08996 * 109.29998 * 290.44285 * 16 15 14 18 18 C 1.53005 * 109.30048 * 170.86186 * 16 15 14 19 19 F 1.39902 * 109.47000 * 60.00071 * 18 16 15 20 20 F 1.39898 * 109.47041 * 180.02562 * 18 16 15 21 21 F 1.39907 * 109.47027 * 300.00141 * 18 16 15 22 22 N 1.45751 * 110.48791 * 50.75623 * 16 15 14 23 23 C 1.33350 * 124.10657 * 340.92371 * 22 16 15 24 24 O 1.21278 * 118.25034 * 182.22152 * 23 22 16 25 25 H 0.96994 * 120.00163 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.66942 * 48.50564 * 14 12 10 27 27 H 1.08991 * 109.67252 * 168.99937 * 14 12 10 28 28 H 1.09000 * 109.60641 * 52.23074 * 15 14 12 29 29 H 1.09000 * 109.60298 * 172.71257 * 15 14 12 30 30 H 0.96999 * 117.94764 * 160.92499 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2834 2.7465 0.0006 6 1 3.1022 1.6963 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4330 -0.0056 12 6 1.3810 -4.8393 -0.0011 13 1 0.7606 -4.9299 0.8905 14 6 2.4365 -5.9478 -0.0016 15 6 3.1098 -5.9753 -1.3791 16 6 2.0854 -6.4387 -2.4156 17 1 1.8608 -7.4929 -2.2538 18 6 2.6673 -6.2551 -3.8188 19 9 3.8352 -7.0153 -3.9423 20 9 1.7325 -6.6776 -4.7701 21 9 2.9658 -4.9042 -4.0268 22 7 0.8576 -5.6616 -2.3022 23 6 0.5153 -4.9576 -1.2226 24 8 -0.5521 -4.3819 -1.2274 25 1 -0.4850 0.8400 0.0004 26 1 3.1821 -5.7449 0.7672 27 1 1.9600 -6.9084 0.1938 28 1 3.4618 -4.9757 -1.6341 29 1 3.9510 -6.6682 -1.3612 30 1 0.2514 -5.6562 -3.0594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914673137.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:42 Heat of formation + Delta-G solvation = -268.932188 kcal Electronic energy + Delta-G solvation = -23163.689836 eV Core-core repulsion = 18930.430739 eV Total energy + Delta-G solvation = -4233.259097 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.24742 -47.79142 -47.65525 -40.63738 -38.64321 -36.75321 -35.28925 -32.99508 -32.17053 -30.63747 -27.25589 -25.26453 -23.48624 -22.74062 -21.25539 -19.08574 -18.62974 -18.39873 -18.22191 -17.79347 -17.10704 -16.43546 -15.95217 -14.91249 -14.81113 -14.64365 -14.46721 -14.38481 -14.16001 -14.13468 -13.89309 -13.82413 -13.71679 -13.42841 -13.05408 -12.57480 -12.13364 -11.62364 -11.47495 -11.36753 -11.09076 -11.07937 -10.46503 -10.39015 -9.88094 -9.64161 -9.33121 -9.07999 -8.58669 -6.40575 -4.10055 2.34706 2.71929 2.90524 3.12303 3.18515 3.22811 3.42481 3.55268 3.77188 3.92138 4.07693 4.40867 4.52483 4.61022 4.68663 4.85164 5.04239 5.14587 5.49280 5.61052 5.74822 6.00286 6.15388 6.64154 6.65832 7.11851 7.35945 7.90893 8.26108 8.61425 9.05053 9.79558 10.75521 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.005564 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.039922 B = 5031.583630 C = 5206.787308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.045 3.955 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.387 4.387 8 H 0.097 0.903 9 O -0.192 6.192 10 C 0.398 3.602 11 O -0.547 6.547 12 C -0.091 4.091 13 H 0.133 0.867 14 C -0.098 4.098 15 C -0.143 4.143 16 C 0.107 3.893 17 H 0.118 0.882 18 C 0.440 3.560 19 F -0.177 7.177 20 F -0.183 7.183 21 F -0.169 7.169 22 N -0.718 5.718 23 C 0.537 3.463 24 O -0.503 6.503 25 H 0.271 0.729 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -15.234 -4.406 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.161 4.161 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.463 4.463 8 H 0.115 0.885 9 O -0.098 6.098 10 C 0.244 3.756 11 O -0.446 6.446 12 C -0.113 4.113 13 H 0.150 0.850 14 C -0.135 4.135 15 C -0.180 4.180 16 C -0.001 4.001 17 H 0.136 0.864 18 C 0.384 3.616 19 F -0.158 7.158 20 F -0.165 7.165 21 F -0.151 7.151 22 N -0.375 5.375 23 C 0.323 3.677 24 O -0.375 6.375 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.021 -14.684 -4.223 15.799 hybrid contribution 0.307 0.738 -0.699 1.062 sum 4.328 -13.946 -4.922 15.410 Atomic orbital electron populations 1.70029 1.06027 1.27925 1.44683 1.25400 0.95804 0.98975 0.95958 0.85740 0.78663 0.79363 0.79370 1.19426 1.20283 1.19372 1.21228 0.92351 0.79767 1.52981 0.88530 1.83949 1.38957 1.13127 1.73724 1.22180 0.86318 0.86380 0.80730 1.90551 1.14909 1.87453 1.51671 1.20971 0.97971 0.93847 0.98514 0.84970 1.21470 0.97785 0.96667 0.97574 1.22121 0.96618 1.05684 0.93601 1.22185 0.87973 0.99260 0.90719 0.86418 1.20979 0.76558 0.74605 0.89409 1.93191 1.49971 1.76046 1.96593 1.93185 1.65383 1.89976 1.67934 1.93271 1.93280 1.32777 1.95732 1.45351 1.21543 1.51376 1.19227 1.19658 0.86873 0.77404 0.83810 1.90866 1.23123 1.42290 1.81253 0.91865 0.88338 0.90177 0.87691 0.88300 0.75793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.71 13.67 55.48 0.76 -24.95 16 2 C 0.04 1.28 5.49 -17.53 -0.10 1.18 16 3 Si 0.94 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.39 -11.57 9.65 30.92 0.30 -11.27 16 8 H 0.10 2.84 6.86 -52.49 -0.36 2.48 16 9 O -0.19 -5.63 9.60 -20.72 -0.20 -5.82 16 10 C 0.40 9.56 6.82 36.01 0.25 9.81 16 11 O -0.55 -13.58 13.59 -19.06 -0.26 -13.84 16 12 C -0.09 -1.61 2.94 -93.14 -0.27 -1.88 16 13 H 0.13 2.14 8.14 -51.93 -0.42 1.72 16 14 C -0.10 -1.23 5.14 -26.52 -0.14 -1.36 16 15 C -0.14 -1.76 4.88 -26.60 -0.13 -1.89 16 16 C 0.11 1.18 3.05 -68.37 -0.21 0.97 16 17 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 18 C 0.44 5.24 2.79 37.16 0.10 5.35 16 19 F -0.18 -1.95 16.96 2.25 0.04 -1.92 16 20 F -0.18 -2.11 16.82 2.25 0.04 -2.07 16 21 F -0.17 -2.59 16.57 2.25 0.04 -2.55 16 22 N -0.72 -10.16 5.05 -54.85 -0.28 -10.43 16 23 C 0.54 9.87 6.88 -11.87 -0.08 9.78 16 24 O -0.50 -11.57 17.73 5.56 0.10 -11.47 16 25 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.10 1.27 7.71 -51.93 -0.40 0.87 16 27 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.10 1.72 5.78 -51.93 -0.30 1.42 16 29 H 0.10 0.91 8.06 -51.93 -0.42 0.49 16 30 H 0.40 5.35 8.23 -40.82 -0.34 5.01 16 LS Contribution 277.84 15.07 4.19 4.19 Total: -1.00 -35.51 277.84 -3.10 -38.61 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -2.22 Total: 3.07 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -0.28 Total: 10.70 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.48 Total: -35.39 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.36 Total: -31.13 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.11 Total: -6.54 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -35.51 -3.10 -38.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914673137.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.323 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds