Wall clock time and date at job start Fri Apr 10 2020 14:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86802 * 120.00052 * 2 1 4 4 H 1.48496 * 109.46996 * 239.99958 * 3 2 1 5 5 H 1.48501 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47037 * 120.00342 * 3 2 1 7 7 C 1.38756 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 180.02562 * 7 2 1 9 9 O 1.34921 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.34314 * 116.99925 * 180.02562 * 9 7 2 11 11 O 1.21216 * 119.99658 * 359.72318 * 10 9 7 12 12 C 1.50700 * 120.00115 * 180.02562 * 10 9 7 13 13 H 1.08998 * 109.39820 * 299.82998 * 12 10 9 14 14 C 1.53071 * 109.40210 * 179.97438 * 12 10 9 15 15 C 1.53341 * 108.42433 * 288.77444 * 14 12 10 16 16 C 1.52920 * 108.67395 * 292.46651 * 15 14 12 17 17 H 1.08996 * 109.29998 * 290.44285 * 16 15 14 18 18 C 1.53005 * 109.30048 * 170.86186 * 16 15 14 19 19 F 1.39902 * 109.47000 * 60.00071 * 18 16 15 20 20 F 1.39898 * 109.47041 * 180.02562 * 18 16 15 21 21 F 1.39907 * 109.47027 * 300.00141 * 18 16 15 22 22 N 1.45751 * 110.48791 * 50.75623 * 16 15 14 23 23 C 1.33350 * 124.10657 * 340.92371 * 22 16 15 24 24 O 1.21278 * 118.25034 * 182.22152 * 23 22 16 25 25 H 0.96994 * 120.00163 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.66942 * 48.50564 * 14 12 10 27 27 H 1.08991 * 109.67252 * 168.99937 * 14 12 10 28 28 H 1.09000 * 109.60641 * 52.23074 * 15 14 12 29 29 H 1.09000 * 109.60298 * 172.71257 * 15 14 12 30 30 H 0.96999 * 117.94764 * 160.92499 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2834 2.7465 0.0006 6 1 3.1022 1.6963 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4330 -0.0056 12 6 1.3810 -4.8393 -0.0011 13 1 0.7606 -4.9299 0.8905 14 6 2.4365 -5.9478 -0.0016 15 6 3.1098 -5.9753 -1.3791 16 6 2.0854 -6.4387 -2.4156 17 1 1.8608 -7.4929 -2.2538 18 6 2.6673 -6.2551 -3.8188 19 9 3.8352 -7.0153 -3.9423 20 9 1.7325 -6.6776 -4.7701 21 9 2.9658 -4.9042 -4.0268 22 7 0.8576 -5.6616 -2.3022 23 6 0.5153 -4.9576 -1.2226 24 8 -0.5521 -4.3819 -1.2274 25 1 -0.4850 0.8400 0.0004 26 1 3.1821 -5.7449 0.7672 27 1 1.9600 -6.9084 0.1938 28 1 3.4618 -4.9757 -1.6341 29 1 3.9510 -6.6682 -1.3612 30 1 0.2514 -5.6562 -3.0594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914673137.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:41 Heat of formation + Delta-G solvation = -295.744017 kcal Electronic energy + Delta-G solvation = -23164.852484 eV Core-core repulsion = 18930.430739 eV Total energy + Delta-G solvation = -4234.421745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.22627 -48.72801 -48.69678 -42.12678 -40.50825 -38.18307 -37.16878 -34.40853 -34.24584 -31.88255 -28.61143 -27.19581 -24.63287 -23.95973 -22.88701 -20.42888 -19.93198 -19.74821 -19.44015 -19.32164 -18.64988 -17.78873 -17.47144 -16.78619 -16.33124 -16.25866 -15.69271 -15.59493 -15.46496 -15.14834 -15.07733 -14.89749 -14.81743 -14.72168 -14.55932 -13.98093 -13.67308 -13.40762 -13.13917 -12.57759 -12.49935 -12.31777 -12.18803 -12.10764 -11.98324 -11.20771 -10.96381 -10.72647 -10.55105 -8.55089 -6.37145 0.97165 1.29561 1.33275 1.48452 1.54045 1.60356 1.84265 2.10252 2.57856 2.69637 2.86209 2.92134 3.04783 3.38437 3.50911 3.57598 3.84454 4.05339 4.43833 4.55630 4.59939 4.80956 5.01578 5.09047 5.19925 5.48425 5.77735 5.81715 6.57515 6.87590 6.88611 7.71598 8.64773 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.005564 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.039922 B = 5031.583630 C = 5206.787308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.007 4.007 3 Si 1.019 2.981 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.255 1.255 7 C -0.424 4.424 8 H 0.089 0.911 9 O -0.236 6.236 10 C 0.400 3.600 11 O -0.556 6.556 12 C -0.090 4.090 13 H 0.146 0.854 14 C -0.089 4.089 15 C -0.146 4.146 16 C 0.108 3.892 17 H 0.177 0.823 18 C 0.441 3.559 19 F -0.167 7.167 20 F -0.180 7.180 21 F -0.196 7.196 22 N -0.706 5.706 23 C 0.538 3.462 24 O -0.561 6.561 25 H 0.278 0.722 26 H 0.097 0.903 27 H 0.135 0.865 28 H 0.058 0.942 29 H 0.140 0.860 30 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 -17.192 -4.448 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.208 4.208 3 Si 0.837 3.163 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.179 1.179 7 C -0.499 4.499 8 H 0.106 0.894 9 O -0.144 6.144 10 C 0.246 3.754 11 O -0.453 6.453 12 C -0.112 4.112 13 H 0.164 0.836 14 C -0.126 4.126 15 C -0.183 4.183 16 C 0.002 3.998 17 H 0.194 0.806 18 C 0.386 3.614 19 F -0.149 7.149 20 F -0.161 7.161 21 F -0.177 7.177 22 N -0.360 5.360 23 C 0.324 3.676 24 O -0.438 6.438 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.153 0.847 28 H 0.077 0.923 29 H 0.158 0.842 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.288 -16.706 -4.290 18.041 hybrid contribution 0.024 1.139 -0.740 1.359 sum 5.312 -15.567 -5.030 17.200 Atomic orbital electron populations 1.70142 1.07955 1.29430 1.46167 1.26674 0.96824 1.02746 0.94565 0.84672 0.77568 0.74043 0.79976 1.18648 1.18561 1.17922 1.21483 0.92287 0.81089 1.55091 0.89372 1.83990 1.40374 1.14315 1.75697 1.23460 0.86576 0.87445 0.77897 1.90522 1.15700 1.88063 1.51041 1.21204 0.99478 0.91459 0.99022 0.83627 1.21629 0.96453 0.96791 0.97733 1.22160 0.98228 1.04290 0.93618 1.22616 0.86069 1.01490 0.89632 0.80556 1.21099 0.76886 0.73542 0.89907 1.93211 1.49516 1.75557 1.96585 1.93198 1.65225 1.89759 1.67938 1.93230 1.93532 1.35047 1.95932 1.45244 1.22577 1.50214 1.17996 1.19709 0.86095 0.77050 0.84719 1.90843 1.25622 1.44849 1.82476 0.91256 0.88413 0.84693 0.92339 0.84214 0.75179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.29 13.67 21.63 0.30 -55.99 16 2 C -0.01 -0.44 5.49 84.88 0.47 0.03 16 3 Si 1.02 44.65 29.55 68.60 2.03 46.68 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.42 -26.36 9.65 67.94 0.66 -25.70 16 8 H 0.09 5.41 6.86 -2.91 -0.02 5.39 16 9 O -0.24 -14.46 9.60 14.83 0.14 -14.32 16 10 C 0.40 19.65 6.82 71.24 0.49 20.14 16 11 O -0.56 -28.06 13.59 20.76 0.28 -27.78 16 12 C -0.09 -3.09 2.94 -12.42 -0.04 -3.13 16 13 H 0.15 4.60 8.14 -2.39 -0.02 4.58 16 14 C -0.09 -1.92 5.14 30.73 0.16 -1.76 16 15 C -0.15 -3.10 4.88 30.68 0.15 -2.95 16 16 C 0.11 1.98 3.05 45.11 0.14 2.12 16 17 H 0.18 1.39 8.14 -2.39 -0.02 1.37 16 18 C 0.44 9.41 2.79 71.98 0.20 9.61 16 19 F -0.17 -3.16 16.96 44.97 0.76 -2.40 16 20 F -0.18 -3.70 16.82 44.97 0.76 -2.94 16 21 F -0.20 -5.91 16.57 44.97 0.74 -5.17 16 22 N -0.71 -18.67 5.05 -446.65 -2.25 -20.92 16 23 C 0.54 19.55 6.88 87.72 0.60 20.16 16 24 O -0.56 -26.54 17.73 -3.02 -0.05 -26.60 16 25 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.10 2.20 7.71 -2.39 -0.02 2.18 16 27 H 0.14 1.54 8.13 -2.39 -0.02 1.52 16 28 H 0.06 1.85 5.78 -2.39 -0.01 1.84 16 29 H 0.14 1.87 8.06 -2.39 -0.02 1.85 16 30 H 0.41 10.29 8.23 -92.71 -0.76 9.53 16 Total: -1.00 -83.71 277.84 5.98 -77.73 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.46 Total: 13.20 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 2.82 Total: 18.51 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -1.96 Total: -76.91 kcal Atomic # 8 Polarization: -69.07 SS G_CDS: 0.37 Total: -68.70 kcal Atomic # 9 Polarization: -12.77 SS G_CDS: 2.26 Total: -10.51 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -83.71 5.98 -77.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914673137.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.014 kcal (2) G-P(sol) polarization free energy of solvation -83.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -301.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -295.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds