Wall clock time and date at job start Fri Apr 10 2020 14:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86793 * 120.00012 * 2 1 4 4 H 1.48502 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47146 * 299.99848 * 3 2 1 6 6 H 1.48502 * 109.47234 * 59.99709 * 3 2 1 7 7 C 1.38751 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99435 * 180.02562 * 7 2 1 9 9 O 1.34915 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.34318 * 117.00016 * 179.97438 * 9 7 2 11 11 O 1.21214 * 119.99702 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00170 * 180.02562 * 10 9 7 13 13 H 1.09003 * 109.32946 * 299.78552 * 12 10 9 14 14 C 1.53067 * 109.40034 * 179.97438 * 12 10 9 15 15 C 1.53346 * 108.42450 * 190.97049 * 14 12 10 16 16 C 1.52919 * 108.67502 * 67.53099 * 15 14 12 17 17 H 1.09002 * 109.29860 * 69.55973 * 16 15 14 18 18 C 1.53008 * 109.30079 * 189.14279 * 16 15 14 19 19 F 1.39900 * 109.46907 * 60.41827 * 18 16 15 20 20 F 1.39897 * 109.46665 * 180.41795 * 18 16 15 21 21 F 1.39898 * 109.46862 * 300.41617 * 18 16 15 22 22 N 1.45749 * 110.48725 * 309.24710 * 16 15 14 23 23 C 1.33354 * 124.10930 * 19.07445 * 22 16 15 24 24 O 1.21280 * 118.25032 * 177.75015 * 23 22 16 25 25 H 0.97003 * 119.99871 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.67321 * 71.24161 * 14 12 10 27 27 H 1.08993 * 109.67744 * 310.70429 * 14 12 10 28 28 H 1.09006 * 109.60110 * 307.77741 * 15 14 12 29 29 H 1.08998 * 109.73699 * 187.36999 * 15 14 12 30 30 H 0.97001 * 117.95044 * 199.07448 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7085 1.3463 -0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3964 1.2125 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2016 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0651 -3.4966 0.0005 11 8 3.2755 -3.4331 0.0001 12 6 1.3809 -4.8393 0.0000 13 1 0.7615 -4.9290 0.8924 14 6 2.4365 -5.9477 -0.0006 15 6 1.7364 -7.2836 -0.2780 16 6 1.2107 -7.2719 -1.7139 17 1 2.0520 -7.3108 -2.4059 18 6 0.3170 -8.4939 -1.9352 19 9 -0.7643 -8.4476 -1.0486 20 9 -0.1584 -8.4918 -3.2510 21 9 1.0564 -9.6596 -1.7084 22 7 0.4367 -6.0625 -1.9640 23 6 0.5152 -4.9575 -1.2215 24 8 -0.1476 -3.9966 -1.5504 25 1 -0.4850 0.8401 0.0004 26 1 2.9286 -5.9863 0.9713 27 1 3.1743 -5.7516 -0.7785 28 1 0.9047 -7.4114 0.4149 29 1 2.4446 -8.1029 -0.1545 30 1 -0.1738 -6.0611 -2.7178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914673138.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:43 Heat of formation + Delta-G solvation = -268.435317 kcal Electronic energy + Delta-G solvation = -22693.790798 eV Core-core repulsion = 18460.553246 eV Total energy + Delta-G solvation = -4233.237551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.41666 -47.93262 -47.86067 -40.57573 -38.61210 -36.76066 -35.26564 -33.10453 -32.10076 -30.67811 -27.41533 -25.20119 -23.51187 -22.85732 -20.91710 -19.33598 -18.73926 -18.57486 -18.30837 -17.70665 -17.03567 -16.68627 -15.91127 -15.09149 -14.79904 -14.73243 -14.46308 -14.34094 -14.30820 -14.19652 -14.04231 -14.00357 -13.86675 -13.64641 -12.89877 -12.61733 -11.97336 -11.82548 -11.55197 -11.36302 -11.18155 -11.05629 -10.40145 -10.37522 -9.79003 -9.58016 -9.34700 -9.07939 -8.53580 -6.35643 -4.03788 2.25544 2.67654 2.86001 3.12193 3.21324 3.28820 3.38925 3.46810 3.62710 3.92613 3.95798 4.33108 4.39808 4.55028 4.63496 4.81312 5.10626 5.18996 5.29672 5.45433 5.52167 5.89384 6.15278 6.62618 6.70761 7.09182 7.41553 7.96886 8.29063 8.68412 9.10612 9.88052 10.80909 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.040061 B = 0.004346 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.765145 B = 6440.818420 C = 6815.214054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.385 4.385 8 H 0.096 0.904 9 O -0.184 6.184 10 C 0.401 3.599 11 O -0.554 6.554 12 C -0.088 4.088 13 H 0.130 0.870 14 C -0.099 4.099 15 C -0.137 4.137 16 C 0.106 3.894 17 H 0.120 0.880 18 C 0.442 3.558 19 F -0.175 7.175 20 F -0.181 7.181 21 F -0.176 7.176 22 N -0.721 5.721 23 C 0.527 3.473 24 O -0.486 6.486 25 H 0.269 0.731 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -18.049 -2.176 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.461 4.461 8 H 0.114 0.886 9 O -0.089 6.089 10 C 0.247 3.753 11 O -0.453 6.453 12 C -0.111 4.111 13 H 0.148 0.852 14 C -0.137 4.137 15 C -0.174 4.174 16 C -0.002 4.002 17 H 0.137 0.863 18 C 0.386 3.614 19 F -0.156 7.156 20 F -0.162 7.162 21 F -0.158 7.158 22 N -0.379 5.379 23 C 0.312 3.688 24 O -0.356 6.356 25 H 0.079 0.921 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.219 -17.290 -2.156 17.467 hybrid contribution -0.087 0.343 -0.411 0.542 sum 1.132 -16.947 -2.566 17.177 Atomic orbital electron populations 1.70058 1.06013 1.27508 1.45090 1.25380 0.95781 0.98904 0.96096 0.85629 0.79445 0.80107 0.78126 1.18920 1.20160 1.20134 1.21319 0.92341 0.79948 1.52476 0.88614 1.83967 1.38655 1.12886 1.73396 1.22109 0.86170 0.86484 0.80579 1.90562 1.15081 1.87619 1.52071 1.20916 0.97691 0.93899 0.98566 0.85200 1.21469 0.96895 0.89862 1.05439 1.22060 1.02476 1.00614 0.92297 1.22147 0.93280 0.82169 1.02604 0.86270 1.20998 0.80466 0.85775 0.74150 1.93217 1.57347 1.96552 1.68505 1.93201 1.89413 1.96680 1.36938 1.93198 1.76653 1.51533 1.94370 1.45419 1.46156 1.12475 1.33842 1.19786 0.82799 0.81856 0.84317 1.90981 1.42158 1.34239 1.68251 0.92115 0.88794 0.89374 0.89281 0.87880 0.75798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.88 13.67 55.48 0.76 -25.12 16 2 C 0.04 1.27 5.49 -17.53 -0.10 1.17 16 3 Si 0.94 21.66 29.55 -169.99 -5.02 16.63 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.38 -11.65 9.64 30.92 0.30 -11.35 16 8 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16 9 O -0.18 -5.46 8.69 -26.75 -0.23 -5.69 16 10 C 0.40 9.87 7.10 36.00 0.26 10.13 16 11 O -0.55 -14.39 15.03 -19.05 -0.29 -14.68 16 12 C -0.09 -1.56 2.86 -93.14 -0.27 -1.83 16 13 H 0.13 2.04 8.14 -51.93 -0.42 1.62 16 14 C -0.10 -1.25 4.78 -26.52 -0.13 -1.38 16 15 C -0.14 -1.21 5.04 -26.59 -0.13 -1.34 16 16 C 0.11 1.00 3.05 -68.37 -0.21 0.80 16 17 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 18 C 0.44 4.12 2.79 37.16 0.10 4.22 16 19 F -0.17 -1.88 16.58 2.25 0.04 -1.84 16 20 F -0.18 -1.80 16.83 2.25 0.04 -1.76 16 21 F -0.18 -1.54 16.94 2.25 0.04 -1.50 16 22 N -0.72 -9.45 5.04 -54.85 -0.28 -9.72 16 23 C 0.53 9.56 7.28 -11.87 -0.09 9.47 16 24 O -0.49 -11.58 16.41 -11.81 -0.19 -11.78 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.20 7.73 -51.93 -0.40 0.80 16 28 H 0.09 0.76 7.55 -51.93 -0.39 0.37 16 29 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 30 H 0.40 4.99 8.24 -40.82 -0.34 4.65 16 LS Contribution 279.26 15.07 4.21 4.21 Total: -1.00 -36.45 279.26 -3.50 -39.95 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -2.31 Total: 1.41 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -0.26 Total: 9.89 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.48 Total: -34.84 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.71 Total: -32.15 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.11 Total: -5.10 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -36.45 -3.50 -39.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914673138.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.486 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds