Wall clock time and date at job start Fri Apr 10 2020 14:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86796 * 119.99468 * 2 1 4 4 H 1.48506 * 109.47393 * 269.99551 * 3 2 1 5 5 H 1.48506 * 109.47524 * 29.99890 * 3 2 1 6 6 H 1.48501 * 109.47048 * 149.99794 * 3 2 1 7 7 C 1.38748 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99866 * 359.72915 * 7 2 1 9 9 O 1.34924 * 119.99822 * 180.02562 * 7 2 1 10 10 C 1.34309 * 117.00044 * 179.72786 * 9 7 2 11 11 O 1.21218 * 119.99774 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00154 * 179.97438 * 10 9 7 13 13 H 1.09005 * 109.39926 * 59.99999 * 12 10 9 14 14 C 1.53066 * 109.40075 * 179.82953 * 12 10 9 15 15 C 1.53134 * 108.53758 * 71.17610 * 14 12 10 16 16 C 1.52914 * 108.65478 * 67.53846 * 15 14 12 17 17 H 1.08997 * 109.13567 * 69.47753 * 16 15 14 18 18 C 1.53002 * 109.30302 * 188.95652 * 16 15 14 19 19 F 1.39899 * 109.47426 * 181.03290 * 18 16 15 20 20 F 1.39897 * 109.46971 * 301.03802 * 18 16 15 21 21 F 1.39904 * 109.46834 * 61.03392 * 18 16 15 22 22 N 1.45759 * 110.48905 * 309.27082 * 16 15 14 23 23 C 1.33351 * 124.10416 * 19.09070 * 22 16 15 24 24 O 1.21280 * 118.24584 * 177.75689 * 23 22 16 25 25 H 0.96995 * 120.00248 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.67376 * 190.96228 * 14 12 10 27 27 H 1.09002 * 109.67684 * 311.49066 * 14 12 10 28 28 H 1.09002 * 109.59116 * 307.79639 * 15 14 12 29 29 H 1.09002 * 109.76558 * 187.38175 * 15 14 12 30 30 H 0.96993 * 117.94773 * 199.07929 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 1.4457 2.6528 0.7000 6 1 3.5458 1.4403 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 1.4682 -2.1368 0.0054 9 8 3.3575 -1.2015 0.0011 10 6 3.9673 -2.3981 0.0072 11 8 3.3071 -3.4148 0.0116 12 6 5.4722 -2.4770 0.0076 13 1 5.8607 -1.9779 0.8955 14 6 5.9045 -3.9453 0.0195 15 6 5.5923 -4.5558 -1.3497 16 6 6.5055 -3.9104 -2.3927 17 1 7.5303 -4.2413 -2.2240 18 6 6.0591 -4.3407 -3.7914 19 9 6.9068 -3.7710 -4.7474 20 9 6.1148 -5.7350 -3.8903 21 9 4.7471 -3.9094 -4.0154 22 7 6.4460 -2.4574 -2.2937 23 6 6.0075 -1.7984 -1.2205 24 8 6.0427 -0.5862 -1.2373 25 1 -0.4850 0.8400 -0.0004 26 1 6.9747 -4.0112 0.2151 27 1 5.3559 -4.4831 0.7928 28 1 4.5506 -4.3636 -1.6067 29 1 5.7700 -5.6309 -1.3231 30 1 6.7442 -1.9372 -3.0561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914673139.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:45 Heat of formation + Delta-G solvation = -293.409870 kcal Electronic energy + Delta-G solvation = -23229.657434 eV Core-core repulsion = 18995.336905 eV Total energy + Delta-G solvation = -4234.320529 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.22760 -48.72810 -48.70179 -42.21463 -40.64438 -38.25800 -37.29996 -34.58984 -34.33541 -31.92349 -28.76794 -27.20735 -24.59308 -23.96815 -22.78030 -20.46223 -20.16840 -19.76439 -19.44010 -19.34772 -18.74844 -17.84269 -17.54667 -16.98682 -16.42523 -16.08386 -15.68439 -15.59479 -15.43361 -15.18855 -15.11005 -14.90059 -14.83063 -14.74430 -14.63389 -14.27181 -13.86441 -13.49526 -13.28651 -12.59858 -12.54927 -12.46040 -12.18778 -12.14644 -11.89883 -11.28433 -11.03155 -10.88807 -10.56998 -8.61497 -6.46318 0.90998 1.22303 1.29518 1.45033 1.50565 1.56875 1.81248 2.21913 2.36715 2.60045 2.83315 2.83917 3.00383 3.34445 3.46030 3.56307 3.82351 4.03729 4.28425 4.42556 4.55759 4.76887 5.01537 5.14403 5.42328 5.45872 5.78150 5.82877 6.42985 6.76372 6.83373 7.51336 8.50779 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.023723 B = 0.005850 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.005360 B = 4785.213942 C = 4828.105762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.405 4.405 8 H 0.068 0.932 9 O -0.254 6.254 10 C 0.414 3.586 11 O -0.546 6.546 12 C -0.090 4.090 13 H 0.159 0.841 14 C -0.092 4.092 15 C -0.148 4.148 16 C 0.109 3.891 17 H 0.179 0.821 18 C 0.440 3.560 19 F -0.179 7.179 20 F -0.169 7.169 21 F -0.196 7.196 22 N -0.705 5.705 23 C 0.540 3.460 24 O -0.560 6.560 25 H 0.290 0.710 26 H 0.140 0.860 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.138 0.862 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.708 -9.776 -4.251 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.481 4.481 8 H 0.086 0.914 9 O -0.162 6.162 10 C 0.260 3.740 11 O -0.441 6.441 12 C -0.112 4.112 13 H 0.176 0.824 14 C -0.128 4.128 15 C -0.186 4.186 16 C 0.003 3.997 17 H 0.196 0.804 18 C 0.385 3.615 19 F -0.161 7.161 20 F -0.150 7.150 21 F -0.178 7.178 22 N -0.359 5.359 23 C 0.326 3.674 24 O -0.437 6.437 25 H 0.100 0.900 26 H 0.158 0.842 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.156 0.844 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 19.249 -9.408 -4.092 21.812 hybrid contribution -0.715 0.684 -0.817 1.283 sum 18.534 -8.723 -4.909 21.064 Atomic orbital electron populations 1.69677 1.07135 1.30162 1.47842 1.25378 0.95853 1.02158 0.94261 0.85263 0.79096 0.77107 0.79476 1.19633 1.18073 1.18062 1.20371 0.77562 0.95926 1.54236 0.91438 1.83627 1.22231 1.32912 1.77454 1.23439 0.91596 0.81733 0.77233 1.90592 1.67479 1.36423 1.49604 1.21290 0.87524 1.02790 0.99560 0.82352 1.21623 1.05039 0.88511 0.97670 1.22143 0.98936 1.03696 0.93811 1.22593 1.06151 0.81447 0.89548 0.80405 1.21124 0.74895 0.75636 0.89869 1.93202 1.70567 1.84644 1.67641 1.93211 1.96060 1.29005 1.96724 1.93235 1.39090 1.89729 1.95741 1.45236 1.65691 1.06812 1.18131 1.19637 0.76234 0.86891 0.84656 1.90811 1.54863 1.15545 1.82471 0.89985 0.84245 0.88458 0.92537 0.84360 0.74945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.87 13.96 21.62 0.30 -55.57 16 2 C 0.02 1.48 5.49 84.87 0.47 1.95 16 3 Si 0.97 47.26 28.62 68.60 1.96 49.22 16 4 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 6 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.41 -25.41 10.10 67.94 0.69 -24.72 16 8 H 0.07 4.69 7.09 -2.91 -0.02 4.67 16 9 O -0.25 -14.07 8.44 14.85 0.13 -13.94 16 10 C 0.41 19.03 6.82 71.24 0.49 19.51 16 11 O -0.55 -27.27 13.59 20.75 0.28 -26.99 16 12 C -0.09 -2.72 2.95 -12.43 -0.04 -2.76 16 13 H 0.16 4.08 8.14 -2.38 -0.02 4.06 16 14 C -0.09 -1.73 5.12 30.66 0.16 -1.58 16 15 C -0.15 -2.91 4.87 30.61 0.15 -2.76 16 16 C 0.11 1.76 3.04 45.10 0.14 1.90 16 17 H 0.18 1.01 8.14 -2.39 -0.02 1.00 16 18 C 0.44 8.78 2.79 71.98 0.20 8.98 16 19 F -0.18 -3.39 16.87 44.97 0.76 -2.63 16 20 F -0.17 -3.07 16.92 44.97 0.76 -2.31 16 21 F -0.20 -5.71 16.60 44.97 0.75 -4.96 16 22 N -0.70 -16.25 5.04 -446.64 -2.25 -18.50 16 23 C 0.54 17.09 6.88 87.71 0.60 17.69 16 24 O -0.56 -22.81 17.73 -3.03 -0.05 -22.86 16 25 H 0.29 16.12 8.31 -92.71 -0.77 15.35 16 26 H 0.14 1.19 8.13 -2.39 -0.02 1.17 16 27 H 0.10 1.99 7.71 -2.39 -0.02 1.97 16 28 H 0.06 1.72 5.82 -2.39 -0.01 1.71 16 29 H 0.14 1.72 8.03 -2.39 -0.02 1.70 16 30 H 0.41 8.86 8.27 -92.71 -0.77 8.09 16 Total: -1.00 -81.32 276.78 5.94 -75.38 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.45 Total: 4.96 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 2.85 Total: 18.22 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.95 Total: -74.07 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: 0.35 Total: -63.80 kcal Atomic # 9 Polarization: -12.18 SS G_CDS: 2.27 Total: -9.91 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.96 Total: 49.22 kcal Total: -81.32 5.94 -75.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914673139.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.029 kcal (2) G-P(sol) polarization free energy of solvation -81.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -299.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -293.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds