Wall clock time and date at job start Fri Apr 10 2020 14:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99611 * 3 2 1 5 5 H 1.48498 * 109.47093 * 30.00442 * 3 2 1 6 6 H 1.48508 * 109.46865 * 150.00102 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21553 * 120.00180 * 0.02562 * 13 12 11 15 15 C 1.47846 * 120.00161 * 179.97438 * 13 12 11 16 16 C 1.39564 * 120.54917 * 359.72091 * 15 13 12 17 17 N 1.31665 * 120.59017 * 179.75209 * 16 15 13 18 18 C 1.31949 * 121.89605 * 0.54067 * 17 16 15 19 19 C 1.38422 * 121.05946 * 359.72225 * 18 17 16 20 20 Cl 1.73602 * 120.36105 * 179.97438 * 19 18 17 21 21 C 1.38513 * 119.27890 * 0.02562 * 19 18 17 22 22 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 23 23 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 24 24 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 25 25 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 26 26 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 27 27 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 28 28 H 1.07997 * 119.70646 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.46768 * 179.74421 * 18 17 16 30 30 H 1.08008 * 120.86057 * 180.02562 * 21 19 18 31 31 H 1.08999 * 113.77157 * 90.38334 * 22 9 7 32 32 H 1.09002 * 113.84143 * 318.91597 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4619 -5.3207 2.2092 15 6 -0.5741 -4.6862 4.2755 16 6 0.4252 -3.9955 4.9626 17 7 0.4375 -3.9689 6.2790 18 6 -0.4755 -4.5943 6.9975 19 6 -1.4967 -5.3059 6.3919 20 17 -2.6882 -6.1225 7.3550 21 6 -1.5571 -5.3603 5.0092 22 6 -0.1058 -2.7570 0.0001 23 1 -0.4850 0.8401 -0.0004 24 1 2.5619 -4.0327 0.6538 25 1 1.8325 -4.2346 -0.9996 26 1 -0.1594 -4.9598 0.2327 27 1 1.0580 -3.5720 2.5714 28 1 1.1932 -3.4752 4.4097 29 1 -0.4255 -4.5498 8.0754 30 1 -2.3430 -5.9078 4.5100 31 1 -0.5312 -2.8713 -0.9969 32 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031100645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:50 Heat of formation + Delta-G solvation = 54.999856 kcal Electronic energy + Delta-G solvation = -18955.323957 eV Core-core repulsion = 15750.970263 eV Total energy + Delta-G solvation = -3204.353694 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77859 -39.23718 -37.52232 -36.93626 -33.58181 -32.74650 -32.07738 -31.08185 -27.63015 -25.07434 -24.89038 -23.87287 -22.97767 -20.84741 -19.44378 -18.16193 -17.20583 -16.77681 -16.69402 -15.51633 -15.38603 -15.13135 -14.81541 -14.10967 -13.88911 -13.74097 -13.45716 -12.92535 -12.73473 -12.64105 -12.33467 -11.72421 -11.54553 -11.28851 -10.91222 -10.61888 -10.37628 -10.32202 -10.08760 -9.89784 -9.62533 -9.56636 -9.29978 -8.90074 -8.54401 -6.97274 -5.82148 -3.16463 0.32617 0.74611 1.66314 2.79975 3.27863 3.35591 3.40344 3.42679 3.60708 4.02619 4.37225 4.39566 4.52833 4.63666 4.82726 5.01108 5.10869 5.42414 5.47604 5.55689 5.69322 6.00974 6.05374 6.16605 6.29105 6.43190 6.68519 7.14194 7.24300 7.44860 7.52374 7.77713 7.91656 8.36964 8.97606 9.64569 10.51065 11.34013 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.003970 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.333879 B = 7050.886249 C = 7651.912044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.611 5.611 10 C 0.111 3.889 11 C 0.088 3.912 12 N -0.682 5.682 13 C 0.561 3.439 14 O -0.539 6.539 15 C -0.164 4.164 16 C 0.141 3.859 17 N -0.469 5.469 18 C 0.131 3.869 19 C -0.100 4.100 20 Cl -0.051 7.051 21 C -0.010 4.010 22 C 0.151 3.849 23 H 0.254 0.746 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.404 0.596 28 H 0.171 0.829 29 H 0.169 0.831 30 H 0.159 0.841 31 H 0.038 0.962 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.557 -11.655 12.791 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.017 4.017 12 N -0.331 5.331 13 C 0.346 3.654 14 O -0.418 6.418 15 C -0.169 4.169 16 C -0.017 4.017 17 N -0.177 5.177 18 C -0.026 4.026 19 C -0.128 4.128 20 Cl -0.022 7.022 21 C -0.037 4.037 22 C 0.025 3.975 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.240 0.760 28 H 0.188 0.812 29 H 0.186 0.814 30 H 0.176 0.824 31 H 0.055 0.945 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.573 -11.329 12.861 17.212 hybrid contribution -0.002 0.787 -0.347 0.860 sum -1.575 -10.542 12.515 16.438 Atomic orbital electron populations 1.69821 1.05034 1.25453 1.56140 1.24784 0.95613 0.97527 1.02208 0.86153 0.78646 0.83505 0.77621 1.21609 1.21638 1.20565 1.19010 0.90245 0.81947 1.44437 0.90209 1.46180 1.02185 0.99149 1.86363 1.22919 0.94236 0.86966 0.97433 1.22954 0.99433 1.00543 0.78811 1.45442 1.29022 1.51205 1.07393 1.17805 0.82209 0.79640 0.85715 1.90768 1.36425 1.44096 1.70502 1.21126 0.98131 1.02224 0.95437 1.23263 0.95592 0.92752 0.90110 1.67888 1.24319 1.17957 1.07567 1.23017 0.88062 0.90433 1.01118 1.21997 0.95727 1.02408 0.92718 1.98390 1.55631 1.77515 1.70665 1.21665 0.96900 0.93859 0.91292 1.22749 0.88291 0.89199 0.97301 0.93566 0.93355 0.93381 0.88939 0.76032 0.81231 0.81386 0.82383 0.94465 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 11.39 55.49 0.63 -25.96 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 3 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.23 -6.10 10.70 -15.06 -0.16 -6.26 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.63 16 9 N -0.61 -14.67 3.70 -177.88 -0.66 -15.33 16 10 C 0.11 2.07 8.68 -2.96 -0.03 2.05 16 11 C 0.09 1.61 4.40 -70.15 -0.31 1.31 16 12 N -0.68 -11.15 5.33 -56.29 -0.30 -11.45 16 13 C 0.56 9.08 7.78 -12.33 -0.10 8.98 16 14 O -0.54 -10.23 16.04 5.32 0.09 -10.14 16 15 C -0.16 -2.19 5.89 -104.83 -0.62 -2.80 16 16 C 0.14 1.73 10.71 -17.13 -0.18 1.55 16 17 N -0.47 -5.69 10.34 -12.88 -0.13 -5.82 16 18 C 0.13 1.35 10.97 -17.43 -0.19 1.15 16 19 C -0.10 -1.05 6.34 -39.41 -0.25 -1.30 16 20 Cl -0.05 -0.47 28.98 -51.86 -1.50 -1.97 16 21 C -0.01 -0.12 9.52 -38.84 -0.37 -0.49 16 22 C 0.15 3.45 7.32 -2.85 -0.02 3.43 16 23 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.09 1.63 7.51 -51.93 -0.39 1.24 16 27 H 0.40 6.09 6.81 -40.82 -0.28 5.81 16 28 H 0.17 1.86 6.42 -52.49 -0.34 1.52 16 29 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.16 1.86 7.74 -52.48 -0.41 1.46 16 31 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 2.01 7.16 -51.93 -0.37 1.64 16 LS Contribution 298.74 15.07 4.50 4.50 Total: -1.00 -31.28 298.74 -7.74 -39.01 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -3.02 Total: 3.24 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -2.32 Total: 7.40 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.46 Total: -58.55 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.28 -7.74 -39.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031100645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.015 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds