Wall clock time and date at job start Fri Apr 10 2020 14:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99611 * 3 2 1 5 5 H 1.48498 * 109.47093 * 30.00442 * 3 2 1 6 6 H 1.48508 * 109.46865 * 150.00102 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21553 * 120.00180 * 0.02562 * 13 12 11 15 15 C 1.47846 * 120.00161 * 179.97438 * 13 12 11 16 16 C 1.39564 * 120.54917 * 359.72091 * 15 13 12 17 17 N 1.31665 * 120.59017 * 179.75209 * 16 15 13 18 18 C 1.31949 * 121.89605 * 0.54067 * 17 16 15 19 19 C 1.38422 * 121.05946 * 359.72225 * 18 17 16 20 20 Cl 1.73602 * 120.36105 * 179.97438 * 19 18 17 21 21 C 1.38513 * 119.27890 * 0.02562 * 19 18 17 22 22 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 23 23 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 24 24 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 25 25 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 26 26 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 27 27 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 28 28 H 1.07997 * 119.70646 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.46768 * 179.74421 * 18 17 16 30 30 H 1.08008 * 120.86057 * 180.02562 * 21 19 18 31 31 H 1.08999 * 113.77157 * 90.38334 * 22 9 7 32 32 H 1.09002 * 113.84143 * 318.91597 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4619 -5.3207 2.2092 15 6 -0.5741 -4.6862 4.2755 16 6 0.4252 -3.9955 4.9626 17 7 0.4375 -3.9689 6.2790 18 6 -0.4755 -4.5943 6.9975 19 6 -1.4967 -5.3059 6.3919 20 17 -2.6882 -6.1225 7.3550 21 6 -1.5571 -5.3603 5.0092 22 6 -0.1058 -2.7570 0.0001 23 1 -0.4850 0.8401 -0.0004 24 1 2.5619 -4.0327 0.6538 25 1 1.8325 -4.2346 -0.9996 26 1 -0.1594 -4.9598 0.2327 27 1 1.0580 -3.5720 2.5714 28 1 1.1932 -3.4752 4.4097 29 1 -0.4255 -4.5498 8.0754 30 1 -2.3430 -5.9078 4.5100 31 1 -0.5312 -2.8713 -0.9969 32 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031100645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:50 Heat of formation + Delta-G solvation = 33.739676 kcal Electronic energy + Delta-G solvation = -18956.245867 eV Core-core repulsion = 15750.970263 eV Total energy + Delta-G solvation = -3205.275604 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.83707 -40.54921 -39.06297 -37.74342 -35.10935 -33.96500 -33.59897 -32.17885 -29.47277 -26.58975 -26.26335 -24.88826 -24.56970 -22.12738 -21.02284 -19.29904 -18.75676 -18.12394 -17.66620 -16.91479 -16.83471 -16.43961 -16.17903 -15.63452 -15.29027 -15.08174 -14.54836 -14.43071 -14.25733 -13.71409 -13.37896 -13.18476 -13.13581 -12.78985 -12.40163 -12.32017 -12.12263 -11.72155 -11.54184 -11.38239 -11.07019 -10.91150 -10.67757 -10.21440 -9.98103 -8.92640 -7.87721 -5.22017 -0.62644 -0.17722 0.83385 1.48314 1.49187 1.57762 1.65176 2.02389 2.48790 2.57366 3.12796 3.28592 3.42302 3.51281 3.54906 3.62830 3.84964 3.88394 4.15203 4.46982 4.58928 4.66520 4.75411 4.82007 4.89992 5.08036 5.17073 5.27435 5.50919 5.67482 5.92938 6.46024 6.55736 6.92257 7.07421 7.63350 8.56291 9.28412 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.003970 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.333879 B = 7050.886249 C = 7651.912044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.065 4.065 3 Si 0.974 3.026 4 H -0.291 1.291 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.229 4.229 8 H 0.090 0.910 9 N -0.635 5.635 10 C 0.119 3.881 11 C 0.112 3.888 12 N -0.680 5.680 13 C 0.565 3.435 14 O -0.571 6.571 15 C -0.179 4.179 16 C 0.144 3.856 17 N -0.483 5.483 18 C 0.142 3.858 19 C -0.097 4.097 20 Cl -0.035 7.035 21 C -0.013 4.013 22 C 0.144 3.856 23 H 0.246 0.754 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.410 0.590 28 H 0.179 0.821 29 H 0.201 0.799 30 H 0.157 0.843 31 H 0.025 0.975 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 -12.498 14.338 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.258 4.258 3 Si 0.803 3.197 4 H -0.219 1.219 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.357 4.357 8 H 0.107 0.893 9 N -0.362 5.362 10 C -0.006 4.006 11 C 0.006 3.994 12 N -0.329 5.329 13 C 0.352 3.648 14 O -0.452 6.452 15 C -0.184 4.184 16 C -0.014 4.014 17 N -0.191 5.191 18 C -0.015 4.015 19 C -0.126 4.126 20 Cl -0.006 7.006 21 C -0.040 4.040 22 C 0.017 3.983 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.248 0.752 28 H 0.196 0.804 29 H 0.218 0.782 30 H 0.175 0.825 31 H 0.043 0.957 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.254 -12.206 14.424 18.897 hybrid contribution -0.436 0.955 -0.752 1.291 sum -0.690 -11.251 13.672 17.720 Atomic orbital electron populations 1.70025 1.06550 1.25386 1.58340 1.25564 0.96328 1.00746 1.03153 0.85143 0.77912 0.79438 0.77225 1.21861 1.22627 1.18783 1.19437 0.90932 0.83088 1.42291 0.89261 1.46458 1.02822 1.00628 1.86340 1.23079 0.95056 0.83629 0.98793 1.22586 0.98828 0.98170 0.79822 1.45381 1.29473 1.51449 1.06622 1.18166 0.81224 0.78562 0.86871 1.90746 1.37512 1.45455 1.71466 1.20857 0.99687 1.04281 0.93585 1.23372 0.95331 0.92243 0.90427 1.67968 1.25142 1.18677 1.07317 1.23549 0.86854 0.88684 1.02453 1.21996 0.96132 1.02307 0.92178 1.98401 1.55006 1.77154 1.70026 1.21734 0.96536 0.93581 0.92126 1.22673 0.87734 0.91389 0.96466 0.94546 0.90867 0.91520 0.87770 0.75239 0.80384 0.78248 0.82522 0.95748 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.81 11.39 21.65 0.25 -56.56 16 2 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 3 Si 0.97 44.49 29.55 68.60 2.03 46.52 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.23 -12.09 10.70 84.03 0.90 -11.19 16 8 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.63 -30.20 3.70 -716.70 -2.65 -32.85 16 10 C 0.12 4.22 8.68 86.49 0.75 4.98 16 11 C 0.11 4.03 4.40 46.74 0.21 4.23 16 12 N -0.68 -21.79 5.33 -450.29 -2.40 -24.18 16 13 C 0.56 18.08 7.78 86.79 0.68 18.76 16 14 O -0.57 -21.69 16.04 -3.88 -0.06 -21.75 16 15 C -0.18 -4.63 5.89 -20.00 -0.12 -4.75 16 16 C 0.14 3.35 10.71 85.04 0.91 4.26 16 17 N -0.48 -10.71 10.34 -194.67 -2.01 -12.72 16 18 C 0.14 2.54 10.97 84.72 0.93 3.47 16 19 C -0.10 -1.85 6.34 22.38 0.14 -1.71 16 20 Cl -0.03 -0.56 28.98 -2.72 -0.08 -0.64 16 21 C -0.01 -0.30 9.52 22.75 0.22 -0.08 16 22 C 0.14 6.74 7.32 86.44 0.63 7.37 16 23 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 24 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.10 3.55 7.51 -2.39 -0.02 3.54 16 27 H 0.41 11.98 6.81 -92.70 -0.63 11.35 16 28 H 0.18 3.68 6.42 -2.91 -0.02 3.66 16 29 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.16 3.62 7.74 -2.91 -0.02 3.60 16 31 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 2.22 7.16 -2.39 -0.02 2.20 16 Total: -1.00 -67.45 298.74 1.32 -66.13 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.54 Total: 13.83 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 5.71 Total: 22.23 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -6.82 Total: -126.32 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.06 Total: -21.75 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -67.45 1.32 -66.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031100645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.872 kcal (2) G-P(sol) polarization free energy of solvation -67.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds