Wall clock time and date at job start Fri Apr 10 2020 14:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99785 * 2 1 4 4 H 1.48495 * 109.47077 * 239.99689 * 3 2 1 5 5 H 1.48504 * 109.47166 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47129 * 119.99729 * 3 2 1 7 7 C 1.37876 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99592 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00109 * 0.02562 * 7 2 1 10 10 O 1.42098 * 106.40146 * 66.45583 * 9 7 2 11 11 O 1.42097 * 106.40241 * 293.53503 * 9 7 2 12 12 N 1.65606 * 107.21849 * 179.97438 * 9 7 2 13 13 C 1.46972 * 120.26664 * 89.99851 * 12 9 7 14 14 C 1.54047 * 108.25930 * 130.70924 * 13 12 9 15 15 H 1.09001 * 112.53233 * 184.31554 * 14 13 12 16 16 C 1.54566 * 107.42627 * 308.88563 * 14 13 12 17 17 C 1.53906 * 106.37072 * 87.32618 * 16 14 13 18 18 C 1.54551 * 106.33225 * 0.02562 * 17 16 14 19 19 H 1.08995 * 112.62888 * 148.14792 * 18 17 16 20 20 C 1.46982 * 120.26115 * 269.97687 * 12 9 7 21 21 C 1.55175 * 103.73646 * 25.30153 * 18 17 16 22 22 F 1.39900 * 110.96159 * 77.56465 * 21 18 17 23 23 F 1.39894 * 110.96163 * 201.31380 * 21 18 17 24 24 H 0.96993 * 119.99687 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.71302 * 250.41393 * 13 12 9 26 26 H 1.08997 * 109.71401 * 11.00456 * 13 12 9 27 27 H 1.08997 * 110.06538 * 328.09750 * 16 14 13 28 28 H 1.08998 * 110.06981 * 206.55076 * 16 14 13 29 29 H 1.09005 * 110.07713 * 240.78499 * 17 16 14 30 30 H 1.09002 * 110.13215 * 119.25072 * 17 16 14 31 31 H 1.09004 * 109.71549 * 348.94856 * 20 12 9 32 32 H 1.08998 * 109.71341 * 109.59234 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 16 1.1237 -2.7199 0.0005 10 8 0.4520 -2.7955 -1.2494 11 8 0.4512 -2.7950 1.2500 12 7 2.2485 -3.9354 0.0005 13 6 2.7517 -4.4790 1.2699 14 6 2.6628 -6.0156 1.2059 15 1 2.9498 -6.4901 2.1443 16 6 1.2247 -6.3783 0.7706 17 6 1.2244 -6.3785 -0.7685 18 6 2.6626 -6.0165 -1.2034 19 1 2.9493 -6.4919 -2.1414 20 6 2.7512 -4.4793 -1.2690 21 6 3.5347 -6.4612 0.0006 22 9 3.7178 -7.8482 0.0007 23 9 4.7651 -5.7957 0.0002 24 1 -0.4849 0.8400 -0.0004 25 1 3.7889 -4.1764 1.4141 26 1 2.1429 -4.1096 2.0951 27 1 0.5218 -5.6342 1.1449 28 1 0.9587 -7.3668 1.1449 29 1 0.5213 -5.6344 -1.1426 30 1 0.9578 -7.3667 -1.1435 31 1 2.1417 -4.1108 -2.0941 32 1 3.7884 -4.1769 -1.4136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192953573.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:35 Heat of formation + Delta-G solvation = -190.344799 kcal Electronic energy + Delta-G solvation = -21842.818744 eV Core-core repulsion = 18179.180628 eV Total energy + Delta-G solvation = -3663.638116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.068 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.71603 -46.87962 -39.26492 -35.41377 -34.05204 -33.24895 -32.94659 -31.55116 -27.99095 -26.16548 -24.55373 -23.81770 -20.53451 -19.68548 -18.82080 -18.00302 -17.18021 -16.39480 -16.02816 -15.69702 -15.58775 -14.88735 -14.62957 -13.99788 -13.71225 -13.59472 -13.36235 -13.30743 -12.72305 -12.69157 -12.21392 -12.19775 -12.02296 -11.52322 -11.27847 -11.23076 -11.10669 -10.92756 -10.64760 -10.41483 -10.35772 -10.26783 -10.23730 -9.90044 -9.27789 -9.00819 -8.34825 -6.74423 -5.37139 2.14923 3.06191 3.10536 3.16231 3.77294 3.95679 4.00917 4.22624 4.35017 4.59294 4.63443 4.93575 5.14667 5.21274 5.35477 5.37832 5.54734 5.65805 5.73484 5.75101 5.93568 6.01740 6.07260 6.09890 6.10886 6.27845 6.32709 6.39996 6.65191 7.28202 7.44252 7.92965 8.84676 10.19265 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.032829 B = 0.006614 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.706933 B = 4232.452638 C = 4527.021398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.263 1.263 7 C -1.022 5.022 8 H 0.103 0.897 9 S 2.714 3.286 10 O -1.001 7.001 11 O -1.001 7.001 12 N -1.009 6.009 13 C 0.125 3.875 14 C -0.135 4.135 15 H 0.111 0.889 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.135 4.135 19 H 0.111 0.889 20 C 0.126 3.874 21 C 0.278 3.722 22 F -0.198 7.198 23 F -0.191 7.191 24 H 0.292 0.708 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 -10.537 0.004 12.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -1.155 5.155 8 H 0.121 0.879 9 S 2.816 3.184 10 O -0.992 6.992 11 O -0.992 6.992 12 N -0.843 5.843 13 C -0.001 4.001 14 C -0.156 4.156 15 H 0.129 0.871 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.156 4.156 19 H 0.129 0.871 20 C -0.001 4.001 21 C 0.242 3.758 22 F -0.179 7.179 23 F -0.172 7.172 24 H 0.102 0.898 25 H 0.089 0.911 26 H 0.125 0.875 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.692 -10.601 0.004 11.593 hybrid contribution 1.300 1.068 -0.001 1.683 sum 5.992 -9.532 0.004 11.259 Atomic orbital electron populations 1.69881 1.06773 1.30923 1.40032 1.24755 0.94479 1.00834 0.88433 0.86203 0.79912 0.79625 0.79875 1.18804 1.20051 1.18798 1.30593 1.06203 1.11793 1.66958 0.87919 1.00544 0.72055 0.72927 0.72874 1.93348 1.72676 1.87510 1.45643 1.93348 1.72637 1.87512 1.45675 1.58169 1.62453 1.54584 1.09142 1.21483 1.00982 0.90209 0.87427 1.23614 0.95884 0.98890 0.97166 0.87103 1.22190 0.95297 1.02320 0.95750 1.22188 0.95288 1.02329 0.95748 1.23601 0.95894 0.98910 0.97179 0.87115 1.21501 1.00980 0.90182 0.87423 1.22194 0.80758 0.73249 0.99614 1.92960 1.95930 1.31478 1.97549 1.92955 1.46678 1.80123 1.97433 0.89771 0.91119 0.87497 0.89672 0.91076 0.89673 0.91076 0.87484 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.51 13.19 55.43 0.73 -23.78 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.37 29.54 -169.99 -5.02 15.34 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -1.02 -27.68 9.75 30.60 0.30 -27.38 16 8 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 9 S 2.71 69.07 5.00 -107.50 -0.54 68.54 16 10 O -1.00 -27.69 16.56 -57.17 -0.95 -28.63 16 11 O -1.00 -27.69 16.57 -57.17 -0.95 -28.63 16 12 N -1.01 -19.50 2.44 -112.42 -0.27 -19.78 16 13 C 0.13 2.08 5.55 -3.24 -0.02 2.07 16 14 C -0.13 -1.89 3.92 -88.04 -0.35 -2.23 16 15 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.12 -1.67 5.94 -25.44 -0.15 -1.82 16 17 C -0.12 -1.67 5.94 -25.44 -0.15 -1.82 16 18 C -0.14 -1.89 3.92 -88.07 -0.34 -2.24 16 19 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 20 C 0.13 2.09 5.55 -3.20 -0.02 2.07 16 21 C 0.28 3.98 2.11 -24.37 -0.05 3.93 16 22 F -0.20 -2.83 17.21 2.25 0.04 -2.79 16 23 F -0.19 -2.92 15.00 2.25 0.03 -2.89 16 24 H 0.29 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.07 1.09 7.46 -51.93 -0.39 0.70 16 26 H 0.11 1.85 6.87 -51.93 -0.36 1.49 16 27 H 0.08 1.37 7.83 -51.93 -0.41 0.96 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.37 7.83 -51.93 -0.41 0.96 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.11 1.85 6.86 -51.93 -0.36 1.50 16 32 H 0.07 1.09 7.46 -51.93 -0.39 0.70 16 LS Contribution 277.98 15.07 4.19 4.19 Total: -1.00 -32.73 277.98 -7.15 -39.88 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.54 Total: 2.41 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -0.88 Total: -23.86 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.46 Total: -43.55 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -1.89 Total: -57.27 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.07 Total: -5.67 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 69.07 SS G_CDS: -0.54 Total: 68.54 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.73 -7.15 -39.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953573.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.469 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds