Wall clock time and date at job start Fri Apr 10 2020 14:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34729 * 117.00359 * 2 1 4 4 O 1.21494 * 120.00188 * 0.02562 * 3 2 1 5 5 C 1.47531 * 119.99967 * 179.97438 * 3 2 1 6 6 C 1.38632 * 120.12300 * 0.28961 * 5 3 2 7 7 C 1.41285 * 119.49309 * 180.28856 * 6 5 3 8 8 C 1.39831 * 120.13379 * 179.73980 * 7 6 5 9 9 H 1.07994 * 120.00308 * 144.70204 * 8 7 6 10 10 C 1.46593 * 119.99983 * 324.71180 * 8 7 6 11 11 N 1.29487 * 119.99958 * 351.66022 * 10 8 7 12 12 Si 1.86805 * 120.00186 * 171.66370 * 10 8 7 13 13 H 1.48498 * 109.47088 * 89.99515 * 12 10 8 14 14 H 1.48499 * 109.47041 * 210.00121 * 12 10 8 15 15 H 1.48500 * 109.46724 * 329.99398 * 12 10 8 16 16 C 1.41683 * 119.73673 * 359.71541 * 7 6 5 17 17 N 1.48017 * 119.88563 * 180.02562 * 16 7 6 18 18 O 1.31705 * 119.99901 * 173.78397 * 17 16 7 19 19 O 1.31694 * 120.00113 * 353.78961 * 17 16 7 20 20 C 1.35926 * 120.23182 * 359.97438 * 16 7 6 21 21 C 1.39675 * 120.52163 * 0.02562 * 20 16 7 22 22 O 1.35075 * 119.87379 * 180.02562 * 21 20 16 23 23 C 1.42903 * 117.00007 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.46977 * 59.99394 * 1 2 3 25 25 H 1.08997 * 109.47884 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47247 * 299.99641 * 1 2 3 27 27 H 1.08002 * 120.25284 * 0.02800 * 6 5 3 28 28 H 0.96996 * 119.99503 * 180.02562 * 11 10 8 29 29 H 1.08002 * 119.73948 * 180.02562 * 20 16 7 30 30 H 1.09007 * 109.47078 * 60.00374 * 23 22 21 31 31 H 1.09000 * 109.47357 * 300.00359 * 23 22 21 32 32 H 1.09004 * 109.47299 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5369 1.2775 0.0006 6 6 4.2944 0.1164 -0.0050 7 6 5.7044 0.2057 0.0019 8 6 6.4814 -0.9568 0.0019 9 1 7.4186 -0.9799 -0.5342 10 6 6.0238 -2.1443 0.7296 11 7 4.9873 -2.0706 1.5021 12 14 6.9360 -3.7636 0.5423 13 1 8.0047 -3.8514 1.5697 14 1 5.9853 -4.8906 0.7193 15 1 7.5431 -3.8361 -0.8110 16 6 6.3280 1.4780 0.0081 17 7 7.8049 1.5754 0.0147 18 8 8.3879 2.7505 -0.1030 19 8 8.5361 0.4870 0.1381 20 6 5.5747 2.6094 0.0071 21 6 4.1800 2.5330 0.0004 22 8 3.4442 3.6657 -0.0011 23 6 4.1585 4.9034 0.0050 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.8103 -0.8490 -0.0102 28 1 4.6848 -2.8563 1.9839 29 1 6.0583 3.5750 0.0115 30 1 4.7897 4.9630 -0.8818 31 1 4.7807 4.9595 0.8982 32 1 3.4501 5.7319 0.0026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000199823348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:46 Heat of formation + Delta-G solvation = -83.201976 kcal Electronic energy + Delta-G solvation = -22104.362516 eV Core-core repulsion = 18421.014025 eV Total energy + Delta-G solvation = -3683.348491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.15104 -39.00353 -37.59635 -36.16490 -35.86366 -34.30163 -32.63710 -31.24267 -30.13112 -27.71457 -27.08298 -26.09183 -24.66950 -22.24330 -21.57958 -20.29917 -18.45604 -17.61324 -17.30277 -16.56543 -16.28632 -15.97686 -15.83687 -15.23687 -15.08538 -14.50403 -14.22150 -14.10486 -13.38004 -13.09982 -13.01578 -12.83174 -12.26354 -11.94412 -11.75323 -11.66907 -11.49161 -11.28635 -10.99385 -10.66048 -10.45775 -10.44065 -9.94871 -9.91709 -9.52615 -9.21753 -9.07707 -8.62277 -7.92488 -7.70230 -5.10563 0.59267 1.93078 2.20110 2.65192 2.71483 2.77343 2.97203 3.11855 3.20017 3.36104 3.78337 3.94187 4.60980 5.24781 5.29129 5.35055 5.45677 5.55608 5.61299 5.65621 5.80377 5.88905 6.00351 6.17923 6.30685 6.38787 6.54676 6.78747 6.89628 7.03964 7.31876 7.58106 7.71838 7.83312 8.12436 8.26912 8.67910 9.01367 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.008411 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.116836 B = 3328.033604 C = 5384.094796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.355 6.355 3 C 0.512 3.488 4 O -0.497 6.497 5 C -0.118 4.118 6 C -0.009 4.009 7 C 0.055 3.945 8 C -0.295 4.295 9 H 0.135 0.865 10 C 0.049 3.951 11 N -0.706 5.706 12 Si 0.943 3.057 13 H -0.253 1.253 14 H -0.266 1.266 15 H -0.245 1.245 16 C -0.063 4.063 17 N 0.037 4.963 18 O -0.354 6.354 19 O -0.279 6.279 20 C -0.138 4.138 21 C 0.069 3.931 22 O -0.294 6.294 23 C 0.028 3.972 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.154 0.846 28 H 0.311 0.689 29 H 0.134 0.866 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 -3.299 -0.893 8.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.272 6.272 3 C 0.357 3.643 4 O -0.385 6.385 5 C -0.120 4.120 6 C -0.029 4.029 7 C 0.050 3.950 8 C -0.322 4.322 9 H 0.153 0.847 10 C -0.183 4.183 11 N -0.328 5.328 12 Si 0.763 3.237 13 H -0.177 1.177 14 H -0.190 1.190 15 H -0.168 1.168 16 C -0.166 4.166 17 N 0.454 4.546 18 O -0.496 6.496 19 O -0.438 6.438 20 C -0.158 4.158 21 C 0.021 3.979 22 O -0.207 6.207 23 C -0.068 4.068 24 H 0.077 0.923 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.171 0.829 28 H 0.124 0.876 29 H 0.152 0.848 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.998 -2.903 -0.744 9.484 hybrid contribution 0.690 -0.247 0.160 0.750 sum -8.308 -3.151 -0.584 8.905 Atomic orbital electron populations 1.23156 0.77101 1.03111 1.02157 1.86605 1.22616 1.33182 1.84842 1.21140 0.89066 0.81133 0.72953 1.90816 1.66525 1.35695 1.45425 1.18392 0.88419 0.92245 1.12973 1.21953 0.92183 0.96903 0.91876 1.17181 0.91779 0.90882 0.95174 1.22418 1.04546 0.91518 1.13768 0.84717 1.28123 0.94435 1.02787 0.92957 1.69007 1.17011 1.34283 1.12459 0.85664 0.79902 0.76041 0.82056 1.17674 1.19009 1.16773 1.19354 0.76414 0.94715 1.26141 1.49594 1.03766 1.01337 0.99911 1.96075 1.76132 1.11111 1.66324 1.96026 1.64522 1.22310 1.60908 1.19928 0.91387 0.98458 1.06005 1.18153 0.87990 0.85137 1.06592 1.86029 1.33580 1.11833 1.89210 1.22958 0.97759 0.84989 1.01106 0.92274 0.88480 0.92225 0.82869 0.87562 0.84825 0.93143 0.93185 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.55 16 2 O -0.36 -6.10 9.80 -40.57 -0.40 -6.49 16 3 C 0.51 10.24 7.89 34.52 0.27 10.51 16 4 O -0.50 -10.63 14.95 -26.59 -0.40 -11.03 16 5 C -0.12 -2.52 5.88 -104.89 -0.62 -3.14 16 6 C -0.01 -0.20 8.24 -38.28 -0.32 -0.52 16 7 C 0.05 1.29 5.51 -106.83 -0.59 0.70 16 8 C -0.30 -6.63 7.81 -35.62 -0.28 -6.91 16 9 H 0.14 3.13 5.87 -52.49 -0.31 2.83 16 10 C 0.05 0.96 5.42 -15.17 -0.08 0.88 16 11 N -0.71 -13.66 11.32 55.99 0.63 -13.03 16 12 Si 0.94 14.67 29.65 -169.99 -5.04 9.63 16 13 H -0.25 -4.06 7.11 56.52 0.40 -3.66 16 14 H -0.27 -3.82 7.11 56.52 0.40 -3.42 16 15 H -0.24 -3.84 7.11 56.52 0.40 -3.43 16 16 C -0.06 -1.58 6.88 -79.46 -0.55 -2.13 16 17 N 0.04 1.02 4.98 34.20 0.17 1.19 16 18 O -0.35 -9.93 19.11 -31.57 -0.60 -10.54 16 19 O -0.28 -7.64 16.22 -31.56 -0.51 -8.16 16 20 C -0.14 -3.14 8.48 -39.87 -0.34 -3.48 16 21 C 0.07 1.51 6.74 -37.98 -0.26 1.26 16 22 O -0.29 -6.00 8.53 -38.83 -0.33 -6.33 16 23 C 0.03 0.43 9.80 101.05 0.99 1.42 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.15 3.09 6.23 -52.49 -0.33 2.76 16 28 H 0.31 5.14 8.27 -40.82 -0.34 4.80 16 29 H 0.13 2.91 5.71 -52.49 -0.30 2.61 16 30 H 0.05 0.76 7.64 -51.92 -0.40 0.36 16 31 H 0.05 0.76 7.64 -51.93 -0.40 0.37 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 293.03 15.07 4.42 4.42 Total: -1.00 -29.87 293.03 -5.31 -35.17 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -2.55 Total: 5.00 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -0.69 Total: 0.16 kcal Atomic # 7 Polarization: -12.64 SS G_CDS: 0.80 Total: -11.84 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -2.24 Total: -42.55 kcal Atomic # 14 Polarization: 14.67 SS G_CDS: -5.04 Total: 9.63 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.87 -5.31 -35.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199823348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.029 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds