Wall clock time and date at job start Fri Apr 10 2020 14:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46844 * 95.24298 * 3 2 1 5 5 C 1.37103 * 119.99927 * 264.13309 * 4 3 2 6 6 H 1.08000 * 120.00085 * 197.42622 * 5 4 3 7 7 C 1.38953 * 119.99522 * 17.43778 * 5 4 3 8 8 N 1.31409 * 120.00371 * 21.53579 * 7 5 4 9 9 Si 1.86803 * 119.99405 * 201.52966 * 7 5 4 10 10 H 1.48493 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46958 * 120.00278 * 9 7 5 12 12 H 1.48503 * 109.47056 * 239.99843 * 9 7 5 13 13 C 1.34771 * 120.00306 * 84.14248 * 4 3 2 14 14 O 1.21288 * 120.00360 * 180.02562 * 13 4 3 15 15 C 1.50702 * 119.99774 * 359.97438 * 13 4 3 16 16 C 1.50706 * 109.47399 * 180.02562 * 15 13 4 17 17 C 1.35307 * 126.04039 * 100.24135 * 16 15 13 18 18 N 1.34948 * 107.76210 * 180.14078 * 17 16 15 19 19 C 1.46498 * 126.02939 * 179.89944 * 18 17 16 20 20 N 1.40087 * 107.94841 * 359.63977 * 18 17 16 21 21 C 1.30895 * 108.20020 * 0.22495 * 20 18 17 22 22 Cl 1.73596 * 125.91368 * 179.97438 * 21 20 18 23 23 H 4.40644 * 5.51417 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.47117 * 335.24381 * 3 2 1 25 25 H 1.08993 * 109.47057 * 215.23693 * 3 2 1 26 26 H 0.96996 * 119.99692 * 180.02562 * 8 7 5 27 27 H 1.09005 * 109.47300 * 60.00883 * 15 13 4 28 28 H 1.08996 * 109.47648 * 300.00844 * 15 13 4 29 29 H 1.08002 * 126.12525 * 0.02562 * 17 16 15 30 30 H 1.08998 * 109.47663 * 269.72352 * 19 18 17 31 31 H 1.09010 * 109.46604 * 29.71818 * 19 18 17 32 32 H 1.08997 * 109.47637 * 149.71216 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.1271 -1.3755 5 6 3.4776 -0.9936 -2.0868 6 1 4.0899 -0.9048 -2.9720 7 6 3.0376 -2.2436 -1.6687 8 7 1.9862 -2.3424 -0.8867 9 14 3.9407 -3.7835 -2.2187 10 1 5.0830 -3.4036 -3.0882 11 1 4.4467 -4.5125 -1.0279 12 1 3.0107 -4.6587 -2.9766 13 6 3.2460 1.3450 -1.9417 14 8 3.6497 1.4497 -3.0806 15 6 2.8682 2.5768 -1.1600 16 6 3.0833 3.7996 -2.0143 17 6 2.1257 4.4806 -2.6851 18 7 2.7235 5.5048 -3.3290 19 6 2.0569 6.4957 -4.1775 20 7 4.0930 5.4571 -3.0383 21 6 4.3082 4.4345 -2.2500 22 17 5.8466 3.9493 -1.6086 23 1 -1.0501 0.0002 0.0001 24 1 3.0097 -0.9324 0.4303 25 1 3.0089 0.8401 0.5929 26 1 1.6794 -3.2150 -0.5946 27 1 3.4882 2.6442 -0.2660 28 1 1.8190 2.5161 -0.8707 29 1 1.0717 4.2454 -2.7036 30 1 2.0443 6.1419 -5.2084 31 1 1.0337 6.6413 -3.8309 32 1 2.5964 7.4414 -4.1245 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491180958.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:43 Heat of formation + Delta-G solvation = 91.473057 kcal Electronic energy + Delta-G solvation = -19406.093841 eV Core-core repulsion = 16203.321744 eV Total energy + Delta-G solvation = -3202.772097 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.30235 -40.25830 -37.72219 -36.96721 -34.49263 -33.90974 -32.92547 -32.65971 -29.44889 -28.11224 -27.05913 -25.77378 -22.21326 -22.02329 -20.52045 -19.59005 -18.31643 -17.91128 -17.75856 -16.63400 -16.21783 -16.08261 -16.04671 -15.72832 -14.82226 -14.46199 -14.22394 -14.06940 -13.97389 -13.75296 -13.46583 -13.20945 -12.81939 -12.75331 -12.55030 -12.47840 -12.34355 -12.10816 -11.52788 -11.09976 -10.99923 -10.55233 -10.33343 -10.18003 -9.72280 -9.37250 -8.24890 -5.83200 0.54134 0.75605 1.37660 1.43856 1.48882 1.58536 2.00409 2.03745 2.24580 2.39951 2.47031 3.12428 3.39555 3.62281 3.93366 3.97775 4.17464 4.39733 4.41546 4.45898 4.57752 4.70860 4.74110 4.79162 5.03490 5.08469 5.21007 5.51995 5.54670 6.01687 6.16597 6.42395 6.55506 7.23340 7.26337 7.54288 8.13637 8.73733 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.005339 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.411313 B = 5242.933539 C = 5761.591785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.152 4.152 3 C 0.232 3.768 4 N -0.458 5.458 5 C -0.344 4.344 6 H 0.070 0.930 7 C 0.004 3.996 8 N -0.872 5.872 9 Si 0.976 3.024 10 H -0.278 1.278 11 H -0.266 1.266 12 H -0.281 1.281 13 C 0.452 3.548 14 O -0.619 6.619 15 C -0.044 4.044 16 C -0.217 4.217 17 C 0.082 3.918 18 N -0.361 5.361 19 C 0.093 3.907 20 N -0.317 5.317 21 C 0.123 3.877 22 Cl -0.003 7.003 23 H 0.233 0.767 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.270 0.730 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.217 0.783 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 13.407 2.526 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.154 4.154 3 C 0.110 3.890 4 N -0.177 5.177 5 C -0.472 4.472 6 H 0.087 0.913 7 C -0.199 4.199 8 N -0.510 5.510 9 Si 0.800 3.200 10 H -0.203 1.203 11 H -0.191 1.191 12 H -0.207 1.207 13 C 0.242 3.758 14 O -0.504 6.504 15 C -0.085 4.085 16 C -0.229 4.229 17 C -0.065 4.065 18 N -0.145 5.145 19 C -0.045 4.045 20 N -0.144 5.144 21 C -0.067 4.067 22 Cl 0.025 6.975 23 H 0.249 0.751 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.233 0.767 30 H 0.102 0.898 31 H 0.145 0.855 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.416 14.345 1.402 14.813 hybrid contribution 0.158 -1.891 -0.001 1.897 sum -3.258 12.454 1.402 12.950 Atomic orbital electron populations 1.25112 0.96271 1.04540 1.00440 1.23425 0.94909 0.97170 0.99850 1.18302 0.84771 1.02423 0.83515 1.43883 1.56777 1.05039 1.11961 1.19494 1.31159 0.84940 1.11576 0.91254 1.25830 0.95539 1.00920 0.97612 1.70170 1.19963 1.25486 1.35365 0.85155 0.78313 0.78172 0.78311 1.20341 1.19089 1.20718 1.20873 0.82533 0.85128 0.87245 1.90490 1.52029 1.86919 1.21000 1.19804 1.03969 0.87706 0.96972 1.19518 0.91240 1.01910 1.10259 1.22800 1.00795 0.89070 0.93858 1.48569 1.03425 1.24258 1.38239 1.22361 0.98526 0.90097 0.93550 1.77153 0.95671 1.21731 1.19876 1.22597 0.88926 0.96036 0.99126 1.98352 1.25685 1.89925 1.83559 0.75056 0.89232 0.88456 0.92017 0.88019 0.87381 0.76660 0.89824 0.85454 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.13 19.25 74.32 1.43 -7.70 16 2 C -0.15 -6.37 10.87 31.12 0.34 -6.03 16 3 C 0.23 9.97 4.91 84.57 0.42 10.38 16 4 N -0.46 -23.12 2.60 -645.42 -1.68 -24.80 16 5 C -0.34 -19.42 9.33 84.04 0.78 -18.64 16 6 H 0.07 4.29 7.39 -2.91 -0.02 4.27 16 7 C 0.00 0.21 4.87 84.93 0.41 0.62 16 8 N -0.87 -45.08 9.48 21.66 0.21 -44.88 16 9 Si 0.98 42.52 29.60 68.60 2.03 44.55 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 13 C 0.45 21.89 7.56 87.66 0.66 22.55 16 14 O -0.62 -35.20 15.68 -3.06 -0.05 -35.25 16 15 C -0.04 -1.57 4.64 29.10 0.14 -1.44 16 16 C -0.22 -7.60 4.60 -20.12 -0.09 -7.69 16 17 C 0.08 2.28 11.40 83.54 0.95 3.23 16 18 N -0.36 -9.71 4.01 -369.57 -1.48 -11.19 16 19 C 0.09 1.33 11.47 127.77 1.47 2.80 16 20 N -0.32 -11.03 12.58 -49.69 -0.62 -11.65 16 21 C 0.12 4.56 7.84 85.25 0.67 5.23 16 22 Cl 0.00 -0.10 29.16 -2.72 -0.08 -0.18 16 23 H 0.23 6.56 7.80 -4.41 -0.03 6.52 16 24 H 0.09 4.14 6.44 -2.39 -0.02 4.13 16 25 H 0.10 3.36 6.69 -2.39 -0.02 3.35 16 26 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 27 H 0.10 3.29 7.42 -2.38 -0.02 3.27 16 28 H 0.11 3.44 7.50 -2.39 -0.02 3.42 16 29 H 0.22 4.14 8.06 -2.91 -0.02 4.12 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -75.44 305.19 6.64 -68.79 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.15 Total: 11.30 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 7.17 Total: 3.30 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -3.58 Total: -92.52 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.05 Total: -35.25 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.08 Total: -0.18 kcal Total: -75.44 6.64 -68.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491180958.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.267 kcal (2) G-P(sol) polarization free energy of solvation -75.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds