Wall clock time and date at job start Fri Apr 10 2020 14:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34827 * 116.99655 * 2 1 4 4 O 1.21574 * 120.00089 * 359.97438 * 3 2 1 5 5 C 1.46924 * 120.00004 * 179.97438 * 3 2 1 6 6 C 1.39421 * 120.59438 * 180.02562 * 5 3 2 7 7 C 1.39432 * 118.95298 * 179.97438 * 6 5 3 8 8 C 1.35788 * 120.13505 * 359.97037 * 7 6 5 9 9 N 1.35415 * 121.24686 * 0.30554 * 8 7 6 10 10 C 1.46501 * 119.46632 * 179.69954 * 9 8 7 11 11 C 1.50698 * 109.47099 * 89.99682 * 10 9 8 12 12 O 1.21210 * 120.00228 * 0.02562 * 11 10 9 13 13 O 1.34318 * 119.99529 * 179.97438 * 11 10 9 14 14 C 1.34925 * 116.99307 * 179.97438 * 13 11 10 15 15 H 1.07991 * 120.00360 * 0.02562 * 14 13 11 16 16 C 1.38758 * 119.99372 * 180.02562 * 14 13 11 17 17 N 1.31438 * 119.99988 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99685 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46777 * 89.99743 * 18 16 14 20 20 H 1.48500 * 109.46755 * 209.99806 * 18 16 14 21 21 H 1.48498 * 109.47115 * 329.99894 * 18 16 14 22 22 C 1.34651 * 121.06626 * 359.43488 * 9 8 7 23 23 O 1.21877 * 120.10975 * 180.28110 * 22 9 8 24 24 H 1.09000 * 109.47174 * 60.00559 * 1 2 3 25 25 H 1.09009 * 109.46909 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47852 * 300.00214 * 1 2 3 27 27 H 1.08009 * 120.52230 * 359.94680 * 6 5 3 28 28 H 1.07992 * 119.93077 * 179.97438 * 7 6 5 29 29 H 1.08002 * 119.37176 * 180.02562 * 8 7 6 30 30 H 1.08995 * 109.47115 * 210.00173 * 10 9 8 31 31 H 1.09004 * 109.47052 * 329.99443 * 10 9 8 32 32 H 0.97012 * 119.99451 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0640 1.2014 0.0000 4 8 1.4018 2.2209 -0.0005 5 6 3.5312 1.2783 0.0006 6 6 4.1769 2.5140 0.0011 7 6 5.5708 2.5471 0.0022 8 6 6.2803 1.3893 0.0033 9 7 5.6601 0.1855 -0.0028 10 6 6.4640 -1.0392 -0.0080 11 6 6.7387 -1.4658 1.4110 12 8 6.3056 -0.8119 2.3351 13 8 7.4628 -2.5713 1.6516 14 6 7.6723 -2.8968 2.9441 15 1 7.2641 -2.2784 3.7297 16 6 8.4124 -4.0261 3.2638 17 7 8.9089 -4.7790 2.3076 18 14 8.7020 -4.4773 5.0533 19 1 7.6082 -5.3650 5.5231 20 1 10.0022 -5.1832 5.1816 21 1 8.7258 -3.2423 5.8775 22 6 4.3166 0.0960 0.0012 23 8 3.7767 -0.9966 0.0008 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.6064 3.4311 0.0003 28 1 6.0873 3.4956 0.0022 29 1 7.3595 1.4294 0.0045 30 1 5.9197 -1.8288 -0.5259 31 1 7.4077 -0.8522 -0.5204 32 1 9.4260 -5.5687 2.5312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924386444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:49 Heat of formation + Delta-G solvation = -151.379862 kcal Electronic energy + Delta-G solvation = -21591.449277 eV Core-core repulsion = 17905.144371 eV Total energy + Delta-G solvation = -3686.304906 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.52491 -39.92822 -38.92838 -36.98751 -36.23675 -35.49625 -34.25062 -32.27312 -30.41357 -28.70748 -27.72684 -25.39993 -24.83801 -22.97172 -21.45817 -20.37190 -18.37774 -17.93311 -17.48452 -17.15782 -16.76520 -16.45892 -16.18818 -15.59903 -15.27030 -14.90126 -14.54779 -14.41011 -14.13650 -13.66352 -13.14364 -12.63295 -12.56652 -12.52326 -12.21501 -11.96193 -11.95245 -11.68593 -11.22575 -10.61230 -10.56844 -10.53449 -10.49466 -10.41321 -9.98121 -9.81591 -9.23679 -8.68792 -8.07366 -6.52321 -4.20700 0.28952 1.86550 2.36255 2.53635 2.95109 3.00672 3.14141 3.19707 3.32176 3.65842 3.89524 4.35664 4.46632 4.51899 4.78430 4.97517 4.99122 5.03499 5.18378 5.20395 5.25143 5.51976 5.55166 5.65493 5.80023 5.96276 6.26968 6.50379 6.51249 6.95288 7.28104 7.81503 7.91576 8.06487 8.52245 8.95781 9.64615 10.64806 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004274 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.541472 B = 6550.344882 C = 7117.608799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.326 6.326 3 C 0.534 3.466 4 O -0.528 6.528 5 C -0.278 4.278 6 C 0.079 3.921 7 C -0.262 4.262 8 C 0.203 3.797 9 N -0.473 5.473 10 C 0.102 3.898 11 C 0.380 3.620 12 O -0.545 6.545 13 O -0.205 6.205 14 C -0.383 4.383 15 H 0.097 0.903 16 C 0.045 3.955 17 N -0.861 5.861 18 Si 0.946 3.054 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.266 1.266 22 C 0.535 3.465 23 O -0.506 6.506 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.060 0.940 27 H 0.148 0.852 28 H 0.157 0.843 29 H 0.171 0.829 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.297 12.325 -7.682 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.241 6.241 3 C 0.381 3.619 4 O -0.420 6.420 5 C -0.283 4.283 6 C 0.056 3.944 7 C -0.285 4.285 8 C 0.070 3.930 9 N -0.180 5.180 10 C -0.020 4.020 11 C 0.225 3.775 12 O -0.442 6.442 13 O -0.111 6.111 14 C -0.459 4.459 15 H 0.115 0.885 16 C -0.160 4.160 17 N -0.497 5.497 18 Si 0.770 3.230 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.190 1.190 22 C 0.334 3.666 23 O -0.384 6.384 24 H 0.078 0.922 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.166 0.834 28 H 0.174 0.826 29 H 0.188 0.812 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.857 11.703 -7.466 15.066 hybrid contribution 0.068 -0.129 0.953 0.965 sum -5.789 11.573 -6.512 14.487 Atomic orbital electron populations 1.23248 0.77098 1.03554 1.01997 1.86867 1.22315 1.31434 1.83478 1.20236 0.87961 0.81580 0.72117 1.90812 1.66518 1.36096 1.48582 1.19918 0.90812 0.93796 1.23791 1.21975 0.94345 0.97064 0.81001 1.20539 0.93436 0.98102 1.16452 1.22396 0.99929 0.84235 0.86432 1.45303 1.08455 1.07142 1.57145 1.21298 0.97532 0.87403 0.95779 1.22959 0.81205 0.82776 0.90528 1.90619 1.52302 1.55634 1.45687 1.83841 1.58788 1.36990 1.31496 1.21252 1.34359 1.10512 0.79754 0.88529 1.25362 0.95461 0.94786 1.00400 1.69987 1.32458 1.14783 1.32501 0.85639 0.78097 0.79104 0.80177 1.19725 1.20190 1.19043 1.16848 0.80444 0.90578 0.78686 1.90995 1.69444 1.28224 1.49706 0.92222 0.88193 0.92167 0.83387 0.82558 0.81204 0.84827 0.85556 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.57 101.05 1.07 1.51 16 2 O -0.33 -5.69 8.77 -48.04 -0.42 -6.11 16 3 C 0.53 9.17 7.88 34.25 0.27 9.44 16 4 O -0.53 -9.13 16.18 -19.32 -0.31 -9.44 16 5 C -0.28 -4.47 5.92 -104.52 -0.62 -5.09 16 6 C 0.08 0.93 9.70 -38.70 -0.38 0.55 16 7 C -0.26 -2.47 9.99 -40.01 -0.40 -2.87 16 8 C 0.20 2.22 10.25 -16.85 -0.17 2.04 16 9 N -0.47 -7.32 2.06 -120.62 -0.25 -7.57 16 10 C 0.10 1.69 5.90 -5.19 -0.03 1.65 16 11 C 0.38 8.91 7.97 36.00 0.29 9.19 16 12 O -0.55 -14.28 15.67 -19.05 -0.30 -14.58 16 13 O -0.21 -5.63 9.75 -20.73 -0.20 -5.83 16 14 C -0.38 -11.06 9.65 30.92 0.30 -10.77 16 15 H 0.10 2.84 6.86 -52.49 -0.36 2.48 16 16 C 0.04 1.23 5.49 -17.53 -0.10 1.14 16 17 N -0.86 -24.50 13.67 55.48 0.76 -23.75 16 18 Si 0.95 20.92 29.55 -169.99 -5.02 15.89 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 C 0.54 9.80 7.43 -14.90 -0.11 9.69 16 23 O -0.51 -11.12 14.76 -16.44 -0.24 -11.36 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.15 1.44 7.69 -52.48 -0.40 1.04 16 28 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 29 H 0.17 1.21 8.02 -52.49 -0.42 0.79 16 30 H 0.13 2.22 7.39 -51.93 -0.38 1.84 16 31 H 0.13 1.47 8.00 -51.93 -0.42 1.05 16 32 H 0.27 7.07 8.31 -40.81 -0.34 6.73 16 LS Contribution 301.20 15.07 4.54 4.54 Total: -1.00 -38.43 301.20 -4.14 -42.57 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -2.81 Total: -0.86 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 0.12 Total: 16.49 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.51 Total: -31.32 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -1.48 Total: -47.32 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -38.43 -4.14 -42.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924386444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.806 kcal (2) G-P(sol) polarization free energy of solvation -38.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds