Wall clock time and date at job start Fri Apr 10 2020 14:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34827 * 116.99655 * 2 1 4 4 O 1.21574 * 120.00089 * 359.97438 * 3 2 1 5 5 C 1.46924 * 120.00004 * 179.97438 * 3 2 1 6 6 C 1.39421 * 120.59438 * 180.02562 * 5 3 2 7 7 C 1.39432 * 118.95298 * 179.97438 * 6 5 3 8 8 C 1.35788 * 120.13505 * 359.97037 * 7 6 5 9 9 N 1.35415 * 121.24686 * 0.30554 * 8 7 6 10 10 C 1.46501 * 119.46632 * 179.69954 * 9 8 7 11 11 C 1.50698 * 109.47099 * 89.99682 * 10 9 8 12 12 O 1.21210 * 120.00228 * 0.02562 * 11 10 9 13 13 O 1.34318 * 119.99529 * 179.97438 * 11 10 9 14 14 C 1.34925 * 116.99307 * 179.97438 * 13 11 10 15 15 H 1.07991 * 120.00360 * 0.02562 * 14 13 11 16 16 C 1.38758 * 119.99372 * 180.02562 * 14 13 11 17 17 N 1.31438 * 119.99988 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99685 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46777 * 89.99743 * 18 16 14 20 20 H 1.48500 * 109.46755 * 209.99806 * 18 16 14 21 21 H 1.48498 * 109.47115 * 329.99894 * 18 16 14 22 22 C 1.34651 * 121.06626 * 359.43488 * 9 8 7 23 23 O 1.21877 * 120.10975 * 180.28110 * 22 9 8 24 24 H 1.09000 * 109.47174 * 60.00559 * 1 2 3 25 25 H 1.09009 * 109.46909 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47852 * 300.00214 * 1 2 3 27 27 H 1.08009 * 120.52230 * 359.94680 * 6 5 3 28 28 H 1.07992 * 119.93077 * 179.97438 * 7 6 5 29 29 H 1.08002 * 119.37176 * 180.02562 * 8 7 6 30 30 H 1.08995 * 109.47115 * 210.00173 * 10 9 8 31 31 H 1.09004 * 109.47052 * 329.99443 * 10 9 8 32 32 H 0.97012 * 119.99451 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0640 1.2014 0.0000 4 8 1.4018 2.2209 -0.0005 5 6 3.5312 1.2783 0.0006 6 6 4.1769 2.5140 0.0011 7 6 5.5708 2.5471 0.0022 8 6 6.2803 1.3893 0.0033 9 7 5.6601 0.1855 -0.0028 10 6 6.4640 -1.0392 -0.0080 11 6 6.7387 -1.4658 1.4110 12 8 6.3056 -0.8119 2.3351 13 8 7.4628 -2.5713 1.6516 14 6 7.6723 -2.8968 2.9441 15 1 7.2641 -2.2784 3.7297 16 6 8.4124 -4.0261 3.2638 17 7 8.9089 -4.7790 2.3076 18 14 8.7020 -4.4773 5.0533 19 1 7.6082 -5.3650 5.5231 20 1 10.0022 -5.1832 5.1816 21 1 8.7258 -3.2423 5.8775 22 6 4.3166 0.0960 0.0012 23 8 3.7767 -0.9966 0.0008 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.6064 3.4311 0.0003 28 1 6.0873 3.4956 0.0022 29 1 7.3595 1.4294 0.0045 30 1 5.9197 -1.8288 -0.5259 31 1 7.4077 -0.8522 -0.5204 32 1 9.4260 -5.5687 2.5312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924386444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:49 Heat of formation + Delta-G solvation = -177.616776 kcal Electronic energy + Delta-G solvation = -21592.586995 eV Core-core repulsion = 17905.144371 eV Total energy + Delta-G solvation = -3687.442624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.73988 -41.26044 -40.72936 -38.25327 -37.57886 -37.27453 -35.53204 -34.35783 -31.50692 -30.12626 -28.75855 -27.36068 -25.93022 -24.27144 -22.72276 -21.96025 -19.98285 -19.56227 -18.93849 -18.68381 -17.81738 -17.65963 -17.46147 -17.03865 -16.76400 -16.72616 -16.18118 -15.83550 -15.49606 -14.75497 -14.44641 -14.22088 -13.91114 -13.68706 -13.51253 -13.37704 -13.11299 -13.03515 -12.96141 -12.42393 -12.20137 -12.08211 -11.80015 -11.78028 -11.64907 -11.17286 -11.01366 -10.74232 -9.20406 -8.58567 -6.38773 -0.73414 0.79464 1.15527 1.22650 1.33940 1.35900 1.50617 1.55203 1.86807 2.08859 2.46572 2.80213 2.92816 3.41775 3.63878 3.85648 3.88822 3.97625 4.16306 4.22924 4.24102 4.28407 4.45569 4.60863 4.74477 4.87043 5.08166 5.11620 5.33045 5.43738 5.76964 5.83737 6.54611 6.69998 6.80614 6.86389 7.62743 8.61068 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004274 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.541472 B = 6550.344882 C = 7117.608799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.527 3.473 4 O -0.541 6.541 5 C -0.323 4.323 6 C 0.101 3.899 7 C -0.239 4.239 8 C 0.195 3.805 9 N -0.479 5.479 10 C 0.115 3.885 11 C 0.382 3.618 12 O -0.577 6.577 13 O -0.234 6.234 14 C -0.421 4.421 15 H 0.080 0.920 16 C 0.001 3.999 17 N -0.896 5.896 18 Si 1.015 2.985 19 H -0.266 1.266 20 H -0.256 1.256 21 H -0.263 1.263 22 C 0.521 3.479 23 O -0.566 6.566 24 H 0.071 0.929 25 H 0.119 0.881 26 H 0.063 0.937 27 H 0.173 0.827 28 H 0.211 0.789 29 H 0.217 0.783 30 H 0.129 0.871 31 H 0.185 0.815 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.689 14.339 -7.776 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.376 3.624 4 O -0.435 6.435 5 C -0.328 4.328 6 C 0.079 3.921 7 C -0.260 4.260 8 C 0.065 3.935 9 N -0.187 5.187 10 C -0.007 4.007 11 C 0.229 3.771 12 O -0.475 6.475 13 O -0.141 6.141 14 C -0.497 4.497 15 H 0.097 0.903 16 C -0.200 4.200 17 N -0.533 5.533 18 Si 0.834 3.166 19 H -0.191 1.191 20 H -0.179 1.179 21 H -0.187 1.187 22 C 0.324 3.676 23 O -0.448 6.448 24 H 0.090 0.910 25 H 0.138 0.862 26 H 0.082 0.918 27 H 0.190 0.810 28 H 0.228 0.772 29 H 0.234 0.766 30 H 0.146 0.854 31 H 0.203 0.797 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.232 13.768 -7.586 16.279 hybrid contribution -0.449 -0.574 0.911 1.167 sum -4.681 13.194 -6.675 15.509 Atomic orbital electron populations 1.23531 0.75095 1.05197 1.02749 1.86853 1.24652 1.32111 1.83486 1.20544 0.88693 0.81365 0.71809 1.90772 1.66895 1.36073 1.49756 1.19995 0.90281 0.94694 1.27836 1.22445 0.95775 0.96216 0.77707 1.21228 0.92217 0.99698 1.12840 1.23389 1.02351 0.82826 0.84902 1.45300 1.07599 1.08337 1.57418 1.21413 1.00115 0.88216 0.90960 1.24335 0.78670 0.80923 0.93187 1.90583 1.52836 1.56230 1.47801 1.83859 1.60410 1.38953 1.30869 1.21366 1.36263 1.11770 0.80262 0.90263 1.26475 0.94319 0.93894 1.05296 1.70052 1.33000 1.15393 1.34868 0.84665 0.78909 0.78951 0.74103 1.19097 1.17945 1.18676 1.17274 0.81505 0.90575 0.78278 1.90942 1.70772 1.30103 1.53002 0.91041 0.86229 0.91804 0.80983 0.77244 0.76603 0.85351 0.79741 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.57 113.37 1.20 1.90 16 2 O -0.36 -13.03 8.77 -50.51 -0.44 -13.47 16 3 C 0.53 18.58 7.88 70.10 0.55 19.14 16 4 O -0.54 -18.79 16.18 19.60 0.32 -18.47 16 5 C -0.32 -10.33 5.92 -19.80 -0.12 -10.45 16 6 C 0.10 2.09 9.70 22.84 0.22 2.31 16 7 C -0.24 -3.28 9.99 21.99 0.22 -3.06 16 8 C 0.20 3.44 10.25 83.57 0.86 4.30 16 9 N -0.48 -14.07 2.06 -653.73 -1.35 -15.42 16 10 C 0.12 3.66 5.90 85.63 0.51 4.17 16 11 C 0.38 18.07 7.97 71.24 0.57 18.64 16 12 O -0.58 -30.70 15.67 20.77 0.33 -30.38 16 13 O -0.23 -13.14 9.75 14.75 0.14 -12.99 16 14 C -0.42 -25.00 9.65 67.94 0.66 -24.34 16 15 H 0.08 4.84 6.86 -2.92 -0.02 4.82 16 16 C 0.00 0.08 5.49 84.88 0.47 0.54 16 17 N -0.90 -51.42 13.67 21.63 0.30 -51.12 16 18 Si 1.01 42.70 29.55 68.60 2.03 44.72 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 20 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 C 0.52 19.36 7.43 85.18 0.63 19.99 16 23 O -0.57 -26.21 14.76 15.61 0.23 -25.98 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.17 2.72 7.69 -2.91 -0.02 2.70 16 28 H 0.21 0.75 8.06 -2.91 -0.02 0.72 16 29 H 0.22 1.74 8.02 -2.91 -0.02 1.72 16 30 H 0.13 4.31 7.39 -2.39 -0.02 4.29 16 31 H 0.19 3.62 8.00 -2.38 -0.02 3.60 16 32 H 0.28 14.58 8.31 -92.70 -0.77 13.81 16 Total: -1.00 -90.58 301.20 8.47 -82.11 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.17 Total: 7.87 kcal Atomic # 6 Polarization: 27.38 SS G_CDS: 5.76 Total: 33.14 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -1.05 Total: -66.55 kcal Atomic # 8 Polarization: -101.86 SS G_CDS: 0.57 Total: -101.29 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -90.58 8.47 -82.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924386444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.506 kcal (2) G-P(sol) polarization free energy of solvation -90.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds