Wall clock time and date at job start Fri Apr 10 2020 14:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38087 * 120.35776 * 2 1 4 4 N 1.31939 * 120.83430 * 179.97438 * 3 2 1 5 5 C 1.32282 * 121.64522 * 0.02562 * 4 3 2 6 6 O 1.35676 * 119.68091 * 179.97438 * 5 4 3 7 7 C 1.42904 * 117.00188 * 0.02966 * 6 5 4 8 8 C 1.50699 * 109.46977 * 179.97438 * 7 6 5 9 9 O 1.21287 * 120.00258 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99495 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99274 * 179.97438 * 10 8 7 12 12 H 1.07992 * 120.00449 * 0.02562 * 11 10 8 13 13 C 1.38949 * 119.99661 * 180.02562 * 11 10 8 14 14 N 1.31421 * 120.00112 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00173 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46915 * 90.00358 * 15 13 11 17 17 H 1.48506 * 109.47198 * 210.00388 * 15 13 11 18 18 H 1.48500 * 109.47345 * 330.00411 * 15 13 11 19 19 C 1.38874 * 120.63020 * 0.02562 * 5 4 3 20 20 N 1.48007 * 120.43847 * 179.97438 * 19 5 4 21 21 O 1.21803 * 119.99745 * 179.97438 * 20 19 5 22 22 O 1.21799 * 120.00052 * 359.72851 * 20 19 5 23 23 C 1.38422 * 119.11800 * 0.27276 * 19 5 4 24 24 H 1.09006 * 109.46977 * 89.99648 * 1 2 3 25 25 H 1.08991 * 109.47458 * 209.99848 * 1 2 3 26 26 H 1.08998 * 109.47079 * 330.00364 * 1 2 3 27 27 H 1.08003 * 119.58373 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.46831 * 299.99679 * 7 6 5 29 29 H 1.08999 * 109.47058 * 59.99335 * 7 6 5 30 30 H 0.96992 * 120.00427 * 0.02562 * 10 8 7 31 31 H 0.96999 * 120.00135 * 179.97438 * 14 13 11 32 32 H 1.07998 * 120.75928 * 179.70302 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2049 1.1915 0.0000 4 7 3.5242 1.2025 0.0005 5 6 4.2276 0.0822 0.0005 6 8 5.5831 0.1400 0.0005 7 6 6.1771 1.4397 0.0012 8 6 7.6782 1.3060 0.0017 9 8 8.1891 0.2060 0.0020 10 7 8.4529 2.4089 0.0018 11 6 9.8185 2.2871 0.0029 12 1 10.2734 1.3077 0.0031 13 6 10.6173 3.4241 0.0035 14 7 10.0638 4.6161 0.0037 15 14 12.4779 3.2584 0.0042 16 1 12.9714 3.2151 -1.3957 17 1 13.0782 4.4220 0.7049 18 1 12.8632 2.0065 0.7039 19 6 3.5918 -1.1524 -0.0005 20 7 4.3830 -2.4033 -0.0011 21 8 3.8170 -3.4818 -0.0015 22 8 5.5999 -2.3542 -0.0056 23 6 2.2083 -1.1976 -0.0074 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6639 2.1263 0.0004 28 1 5.8608 1.9841 -0.8886 29 1 5.8607 1.9833 0.8914 30 1 8.0444 3.2886 0.0020 31 1 10.6214 5.4098 0.0045 32 1 1.6866 -2.1432 -0.0131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175139053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:30 Heat of formation + Delta-G solvation = -61.476589 kcal Electronic energy + Delta-G solvation = -21218.985222 eV Core-core repulsion = 17568.871566 eV Total energy + Delta-G solvation = -3650.113656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.35416 -41.97852 -40.46567 -39.15164 -37.56167 -36.08106 -34.67935 -33.85914 -33.40893 -30.15901 -28.04562 -27.80929 -26.61549 -24.64573 -23.23433 -21.53092 -20.37876 -20.16851 -19.88200 -19.45031 -18.72017 -18.25317 -17.62866 -17.53271 -16.64390 -16.09029 -15.77838 -15.75594 -15.08162 -14.79570 -14.76506 -14.11148 -13.67792 -13.63033 -13.57488 -13.02811 -12.96874 -12.74121 -12.49281 -12.31996 -12.30163 -12.23421 -12.13282 -11.68375 -11.59878 -11.22553 -10.52240 -10.12563 -9.87441 -8.53996 -6.04142 -1.35658 -0.27908 0.13321 0.30189 1.27841 1.34495 1.42514 1.55926 1.85558 2.15531 2.28560 2.73013 2.96208 3.11121 3.19764 3.41369 3.56018 3.84483 3.97396 4.11970 4.19582 4.25470 4.48449 4.84661 4.91297 5.03803 5.14871 5.35481 5.37258 5.66884 5.90649 6.20710 6.46052 6.48227 7.02238 7.37976 7.94082 8.63079 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028462 B = 0.003800 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.516751 B = 7367.102153 C = 8330.170343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.156 4.156 3 C 0.200 3.800 4 N -0.537 5.537 5 C 0.362 3.638 6 O -0.277 6.277 7 C 0.075 3.925 8 C 0.430 3.570 9 O -0.615 6.615 10 N -0.555 5.555 11 C -0.340 4.340 12 H 0.079 0.921 13 C -0.006 4.006 14 N -0.913 5.913 15 Si 0.996 3.004 16 H -0.269 1.269 17 H -0.266 1.266 18 H -0.274 1.274 19 C -0.142 4.142 20 N 0.038 4.962 21 O -0.141 6.141 22 O -0.216 6.216 23 C 0.020 3.980 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.228 0.772 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.401 0.599 31 H 0.282 0.718 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.910 -1.655 -0.029 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.159 4.159 3 C 0.043 3.957 4 N -0.262 5.262 5 C 0.182 3.818 6 O -0.179 6.179 7 C -0.003 4.003 8 C 0.216 3.784 9 O -0.501 6.501 10 N -0.193 5.193 11 C -0.469 4.469 12 H 0.097 0.903 13 C -0.207 4.207 14 N -0.553 5.553 15 Si 0.819 3.181 16 H -0.194 1.194 17 H -0.190 1.190 18 H -0.199 1.199 19 C -0.230 4.230 20 N 0.550 4.450 21 O -0.365 6.365 22 O -0.416 6.416 23 C -0.005 4.005 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.244 0.756 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.236 0.764 31 H 0.091 0.909 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -24.029 -0.968 -0.019 24.049 hybrid contribution 1.019 -0.643 -0.015 1.205 sum -23.010 -1.611 -0.034 23.067 Atomic orbital electron populations 1.20845 0.84604 1.05677 1.04704 1.21311 1.00811 0.90493 1.03287 1.23912 0.86607 1.01227 0.83930 1.67999 1.11851 1.25300 1.21051 1.19836 0.85182 0.88861 0.87931 1.86621 1.14658 1.32080 1.84563 1.22304 0.89974 0.82197 1.05842 1.20229 0.88786 0.85012 0.84355 1.90597 1.75842 1.27474 1.56236 1.41667 1.06188 1.07210 1.64227 1.19697 0.81738 0.94655 1.50803 0.90250 1.26073 1.05151 0.93827 0.95601 1.69659 1.38405 0.98097 1.49141 0.84888 0.76235 0.78135 0.78841 1.19411 1.19039 1.19896 1.21561 0.93653 0.81654 1.26094 1.43671 1.01587 1.02589 0.97157 1.94390 1.73114 1.17185 1.51786 1.94826 0.95464 1.94444 1.56850 1.21759 0.87425 1.03419 0.87909 0.88820 0.89617 0.88137 0.75579 0.87031 0.87042 0.76401 0.90887 0.78928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.11 10.03 71.24 0.71 0.61 16 2 C -0.16 -1.55 5.90 -19.77 -0.12 -1.67 16 3 C 0.20 2.46 10.85 84.64 0.92 3.38 16 4 N -0.54 -12.63 9.22 -308.93 -2.85 -15.48 16 5 C 0.36 11.52 7.47 84.78 0.63 12.16 16 6 O -0.28 -11.53 7.69 -60.95 -0.47 -12.00 16 7 C 0.07 2.90 5.79 71.24 0.41 3.32 16 8 C 0.43 22.22 7.86 87.66 0.69 22.91 16 9 O -0.62 -38.17 16.07 15.99 0.26 -37.91 16 10 N -0.55 -29.29 5.29 -306.99 -1.62 -30.91 16 11 C -0.34 -19.74 9.68 84.04 0.81 -18.92 16 12 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 13 C -0.01 -0.30 5.50 84.92 0.47 0.16 16 14 N -0.91 -48.67 13.05 21.66 0.28 -48.39 16 15 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 19 C -0.14 -4.10 6.89 36.57 0.25 -3.85 16 20 N 0.04 1.39 4.45 -46.00 -0.20 1.19 16 21 O -0.14 -4.65 18.52 18.88 0.35 -4.30 16 22 O -0.22 -10.02 17.28 25.58 0.44 -9.58 16 23 C 0.02 0.34 9.35 22.45 0.21 0.55 16 24 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 25 H 0.08 0.01 8.10 -2.39 -0.02 -0.01 16 26 H 0.10 -0.25 8.09 -2.39 -0.02 -0.27 16 27 H 0.23 0.53 8.06 -2.91 -0.02 0.51 16 28 H 0.11 3.72 8.10 -2.39 -0.02 3.70 16 29 H 0.11 3.71 8.10 -2.39 -0.02 3.69 16 30 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 31 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.19 2.15 7.69 -2.91 -0.02 2.13 16 Total: -1.00 -82.67 301.42 3.66 -79.01 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.45 Total: 14.59 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 4.99 Total: 18.64 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -4.39 Total: -93.59 kcal Atomic # 8 Polarization: -64.37 SS G_CDS: 0.58 Total: -63.79 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -82.67 3.66 -79.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175139053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.531 kcal (2) G-P(sol) polarization free energy of solvation -82.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds