Wall clock time and date at job start Fri Apr 10 2020 14:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36401 * 120.37125 * 2 1 4 4 C 1.40534 * 119.30700 * 180.02562 * 3 2 1 5 5 O 1.22069 * 119.98526 * 180.02562 * 4 3 2 6 6 N 1.34653 * 120.03133 * 0.02562 * 4 3 2 7 7 C 1.46500 * 119.62938 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47406 * 270.00412 * 7 6 4 9 9 O 1.21292 * 119.99862 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00100 * 179.97438 * 8 7 6 11 11 C 1.37093 * 119.99906 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00540 * 359.97438 * 11 10 8 13 13 C 1.38953 * 120.00085 * 180.02562 * 11 10 8 14 14 N 1.31420 * 119.99736 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00356 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47069 * 89.99458 * 15 13 11 17 17 H 1.48494 * 109.47114 * 209.99538 * 15 13 11 18 18 H 1.48496 * 109.46936 * 329.99887 * 15 13 11 19 19 C 1.35769 * 120.75036 * 359.97438 * 6 4 3 20 20 C 1.35353 * 120.69746 * 0.02562 * 19 6 4 21 21 N 1.48004 * 120.02043 * 179.97438 * 20 19 6 22 22 O 1.21793 * 120.00306 * 354.53133 * 21 20 19 23 23 O 1.21803 * 119.99896 * 174.53146 * 21 20 19 24 24 H 1.08994 * 109.47462 * 244.76288 * 1 2 3 25 25 H 1.09001 * 109.46877 * 4.76303 * 1 2 3 26 26 H 1.08998 * 109.46900 * 124.75711 * 1 2 3 27 27 H 1.08000 * 120.34475 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.46691 * 30.00555 * 7 6 4 29 29 H 1.09004 * 109.46828 * 149.99665 * 7 6 4 30 30 H 0.97005 * 119.99918 * 359.97438 * 10 8 7 31 31 H 0.96999 * 119.99570 * 180.02562 * 14 13 11 32 32 H 1.07997 * 119.65312 * 180.27554 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1768 0.0000 4 6 3.6017 1.1507 -0.0005 5 8 4.2313 2.1965 -0.0001 6 7 4.2539 -0.0274 -0.0016 7 6 5.7188 -0.0443 -0.0027 8 6 6.2200 -0.0493 -1.4239 9 8 5.4312 -0.0402 -2.3452 10 7 7.5448 -0.0640 -1.6711 11 6 8.0008 -0.0691 -2.9640 12 1 7.2985 -0.0618 -3.7844 13 6 9.3667 -0.0848 -3.2190 14 7 10.2213 -0.0942 -2.2207 15 14 9.9880 -0.0925 -4.9806 16 1 10.1685 1.3055 -5.4479 17 1 11.2881 -0.8073 -5.0437 18 1 9.0013 -0.7817 -5.8504 19 6 3.5692 -1.1998 -0.0016 20 6 2.2157 -1.2096 -0.0011 21 7 1.4846 -2.4964 -0.0017 22 8 2.0965 -3.5445 -0.1031 23 8 0.2708 -2.5072 0.0993 24 1 -0.3634 -0.4381 0.9295 25 1 -0.3633 1.0241 -0.0853 26 1 -0.3633 -0.5859 -0.8443 27 1 1.6684 2.1188 0.0004 28 1 6.0927 0.8412 0.5113 29 1 6.0721 -0.9387 0.5105 30 1 8.1757 -0.0709 -0.9343 31 1 11.1748 -0.1047 -2.3987 32 1 4.1103 -2.1345 0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353833174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:04:36 Heat of formation + Delta-G solvation = -37.998777 kcal Electronic energy + Delta-G solvation = -21637.399478 eV Core-core repulsion = 17988.303896 eV Total energy + Delta-G solvation = -3649.095582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.43079 -41.46835 -38.40188 -37.36528 -36.68427 -35.49114 -34.18031 -31.63972 -31.32789 -29.90278 -27.53590 -26.27463 -24.73908 -23.55683 -22.19161 -20.22391 -19.28678 -18.85635 -18.20895 -17.69611 -17.53139 -16.92967 -16.72418 -15.72355 -15.30820 -14.69006 -14.56840 -14.34130 -13.91121 -13.62274 -13.56404 -12.96849 -12.91770 -12.45073 -12.19293 -12.01649 -11.75011 -11.43518 -11.21065 -11.12372 -10.96114 -10.55842 -10.48211 -10.39456 -10.23504 -9.77752 -8.90292 -8.47267 -8.26144 -6.65871 -4.08084 0.00211 0.56488 1.22552 1.63184 2.33421 3.01665 3.15325 3.20083 3.25020 3.48732 3.93490 3.99219 4.10903 4.28244 4.47297 4.60695 4.86018 5.09318 5.12664 5.19383 5.40252 5.41995 5.51740 5.57542 5.84692 5.88123 5.95413 6.39375 6.58616 7.33369 7.65704 7.68831 7.75586 8.26895 8.89938 9.19043 9.66753 10.50501 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.004218 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.252627 B = 6636.393666 C = 7141.507903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.036 3.964 3 C -0.229 4.229 4 C 0.525 3.475 5 O -0.510 6.510 6 N -0.455 5.455 7 C 0.070 3.930 8 C 0.416 3.584 9 O -0.587 6.587 10 N -0.541 5.541 11 C -0.306 4.306 12 H 0.106 0.894 13 C 0.029 3.971 14 N -0.892 5.892 15 Si 0.935 3.065 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.263 3.737 20 C -0.162 4.162 21 N 0.059 4.941 22 O -0.181 6.181 23 O -0.163 6.163 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.167 0.833 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.396 0.604 31 H 0.276 0.724 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.211 -1.815 8.530 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.033 3.967 3 C -0.251 4.251 4 C 0.326 3.674 5 O -0.388 6.388 6 N -0.161 5.161 7 C -0.055 4.055 8 C 0.200 3.800 9 O -0.473 6.473 10 N -0.175 5.175 11 C -0.435 4.435 12 H 0.124 0.876 13 C -0.174 4.174 14 N -0.532 5.532 15 Si 0.761 3.239 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.192 1.192 19 C 0.125 3.875 20 C -0.253 4.253 21 N 0.572 4.428 22 O -0.391 6.391 23 O -0.377 6.377 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.184 0.816 28 H 0.145 0.855 29 H 0.135 0.865 30 H 0.229 0.771 31 H 0.086 0.914 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -11.664 -0.459 7.913 14.102 hybrid contribution 0.754 -0.399 -0.465 0.972 sum -10.910 -0.858 7.447 13.237 Atomic orbital electron populations 1.21088 0.88066 1.03580 1.04791 1.19785 0.98197 0.89553 0.89184 1.21921 0.91910 0.98971 1.12305 1.17276 0.89350 0.82616 0.78154 1.91017 1.68989 1.29633 1.49140 1.45337 1.09434 1.05947 1.55357 1.22101 0.75964 1.06960 1.00462 1.19588 0.84200 0.87283 0.88893 1.90595 1.54969 1.56848 1.44847 1.41747 1.04286 1.62081 1.09431 1.19740 0.91481 1.48484 0.83799 0.87616 1.25343 0.95582 0.96350 1.00156 1.69601 1.03274 1.48696 1.31606 0.85782 0.78201 0.78657 0.81276 1.20105 1.20614 1.19207 1.21661 0.91549 0.92383 0.81956 1.19794 0.91202 0.84786 1.29566 1.42912 1.00947 1.01775 0.97132 1.94560 1.69578 1.20188 1.54748 1.94496 0.95704 1.93803 1.53740 0.88983 0.90714 0.89200 0.81574 0.85512 0.86485 0.77052 0.91386 0.79189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 8.40 36.01 0.30 -0.79 16 2 C 0.04 0.44 5.89 -104.55 -0.62 -0.18 16 3 C -0.23 -3.01 9.62 -39.38 -0.38 -3.39 16 4 C 0.53 8.69 7.40 -15.45 -0.11 8.57 16 5 O -0.51 -10.16 16.64 4.86 0.08 -10.08 16 6 N -0.45 -6.86 2.07 -121.06 -0.25 -7.11 16 7 C 0.07 1.06 5.81 -5.19 -0.03 1.03 16 8 C 0.42 9.05 7.85 -10.99 -0.09 8.96 16 9 O -0.59 -15.17 16.01 5.55 0.09 -15.08 16 10 N -0.54 -12.68 5.29 -10.96 -0.06 -12.74 16 11 C -0.31 -8.09 9.68 -14.93 -0.14 -8.23 16 12 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 13 C 0.03 0.74 5.50 -17.46 -0.10 0.64 16 14 N -0.89 -22.83 13.05 55.50 0.72 -22.11 16 15 Si 0.93 20.12 29.55 -169.99 -5.02 15.09 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 C 0.26 3.41 9.81 -16.84 -0.17 3.25 16 20 C -0.16 -2.12 6.81 -80.25 -0.55 -2.67 16 21 N 0.06 0.81 4.45 33.82 0.15 0.96 16 22 O -0.18 -2.66 18.41 -29.46 -0.54 -3.20 16 23 O -0.16 -2.21 15.61 -29.46 -0.46 -2.67 16 24 H 0.09 0.78 7.52 -51.93 -0.39 0.39 16 25 H 0.07 0.53 7.90 -51.93 -0.41 0.12 16 26 H 0.09 0.87 7.22 -51.93 -0.37 0.49 16 27 H 0.17 1.81 7.96 -52.49 -0.42 1.40 16 28 H 0.13 1.86 7.39 -51.93 -0.38 1.47 16 29 H 0.12 1.25 8.01 -51.93 -0.42 0.83 16 30 H 0.40 8.64 7.90 -40.82 -0.32 8.32 16 31 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.19 1.98 7.52 -52.49 -0.39 1.59 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -32.77 296.04 -5.32 -38.09 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -2.62 Total: 7.18 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -1.87 Total: 7.20 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.57 Total: -40.99 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.83 Total: -31.03 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.77 -5.32 -38.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353833174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.091 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds