Wall clock time and date at job start Fri Apr 10 2020 14:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31393 * 1 3 3 Si 1.86799 * 119.99983 * 2 1 4 4 H 1.48507 * 109.47213 * 239.99967 * 3 2 1 5 5 H 1.48498 * 109.47287 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47526 * 119.99923 * 3 2 1 7 7 C 1.39019 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00117 * 158.94184 * 7 2 1 9 9 N 1.36870 * 119.99765 * 338.95262 * 7 2 1 10 10 C 1.46503 * 120.00335 * 351.84851 * 9 7 2 11 11 C 1.50704 * 109.46905 * 92.28520 * 10 9 7 12 12 O 1.20821 * 120.00255 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99800 * 180.02562 * 11 10 9 14 14 C 1.34774 * 120.00152 * 171.85664 * 9 7 2 15 15 O 1.21726 * 119.99826 * 5.77523 * 14 9 7 16 16 C 1.46680 * 120.00285 * 185.78383 * 14 9 7 17 17 C 1.36466 * 125.85735 * 186.90759 * 16 14 9 18 18 C 1.41288 * 107.00896 * 179.90647 * 17 16 14 19 19 C 1.47389 * 126.46080 * 180.11236 * 18 17 16 20 20 N 1.34774 * 120.00242 * 180.26332 * 19 18 17 21 21 O 1.21617 * 119.99930 * 0.25883 * 19 18 17 22 22 C 1.38231 * 107.08465 * 0.35099 * 18 17 16 23 23 N 1.34312 * 108.41182 * 359.78657 * 22 18 17 24 24 H 0.96991 * 125.39598 * 180.02562 * 23 22 18 25 25 H 0.96999 * 119.99974 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47527 * 212.28599 * 10 9 7 27 27 H 1.09006 * 109.47045 * 332.29002 * 10 9 7 28 28 H 0.96698 * 116.99888 * 179.97438 * 13 11 10 29 29 H 1.07993 * 126.49876 * 0.02562 * 17 16 14 30 30 H 0.96996 * 120.00266 * 359.97438 * 20 19 18 31 31 H 0.97003 * 119.99835 * 180.02562 * 20 19 18 32 32 H 1.07998 * 125.79850 * 179.81937 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1017 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1016 1.6965 1.2124 7 6 2.0091 -1.2039 0.0005 8 1 3.0349 -1.2352 -0.3355 9 7 1.3932 -2.3495 0.4268 10 6 0.0682 -2.2813 1.0480 11 6 -0.9916 -2.4632 -0.0080 12 8 -0.6728 -2.6328 -1.1609 13 8 -2.2897 -2.4367 0.3325 14 6 2.0058 -3.5404 0.2751 15 8 3.1479 -3.5884 -0.1433 16 6 1.2963 -4.7786 0.6141 17 6 1.8386 -6.0307 0.6343 18 6 0.8090 -6.9209 1.0134 19 6 0.9281 -8.3814 1.1717 20 7 -0.1459 -9.1097 1.5356 21 8 1.9956 -8.9295 0.9737 22 6 -0.3325 -6.1647 1.2026 23 7 -0.0336 -4.8777 0.9611 24 1 -0.6552 -4.1356 1.0219 25 1 -0.4850 0.8400 0.0004 26 1 -0.0240 -3.0698 1.7948 27 1 -0.0590 -1.3104 1.5270 28 1 -2.9328 -2.5575 -0.3794 29 1 2.8614 -6.2915 0.4059 30 1 -0.9973 -8.6726 1.6938 31 1 -0.0674 -10.0709 1.6401 32 1 -1.3003 -6.5441 1.4954 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069018.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:43 Heat of formation + Delta-G solvation = -81.166056 kcal Electronic energy + Delta-G solvation = -22372.453814 eV Core-core repulsion = 18721.486359 eV Total energy + Delta-G solvation = -3650.967455 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49683 -39.64027 -38.67770 -37.96589 -35.61857 -34.88515 -33.57348 -32.22882 -30.89235 -29.11559 -28.13460 -25.30389 -23.24173 -22.00940 -21.29067 -19.95750 -19.45507 -17.94060 -17.54673 -17.19891 -16.57307 -16.50029 -15.99718 -15.55011 -14.77454 -14.70823 -14.63930 -14.20717 -13.93287 -13.51532 -13.13889 -13.00338 -12.72783 -12.33266 -12.10986 -11.80318 -11.69817 -11.08808 -10.78092 -10.61571 -10.47848 -10.02997 -9.93576 -9.61952 -9.30546 -8.95666 -8.82513 -8.25506 -8.01521 -6.70150 -4.07570 1.77963 2.19922 2.83096 3.09880 3.13387 3.17286 3.37455 3.52084 3.70472 3.74382 3.95640 4.17232 4.46280 4.84762 4.95809 5.13321 5.32040 5.32921 5.49898 6.02123 6.13849 6.30785 6.34702 6.75689 6.87925 7.05848 7.09417 7.32582 7.41372 7.47858 7.74772 8.12629 8.46476 8.59825 8.82590 9.02078 9.55041 10.37557 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027459 B = 0.005470 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.442823 B = 5117.312616 C = 5918.116255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.296 4.296 8 H 0.117 0.883 9 N -0.424 5.424 10 C 0.121 3.879 11 C 0.470 3.530 12 O -0.490 6.490 13 O -0.534 6.534 14 C 0.520 3.480 15 O -0.556 6.556 16 C -0.017 4.017 17 C -0.071 4.071 18 C -0.237 4.237 19 C 0.597 3.403 20 N -0.859 5.859 21 O -0.549 6.549 22 C 0.042 3.958 23 N -0.534 5.534 24 H 0.419 0.581 25 H 0.276 0.724 26 H 0.077 0.923 27 H 0.153 0.847 28 H 0.397 0.603 29 H 0.155 0.845 30 H 0.397 0.603 31 H 0.400 0.600 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.955 -7.343 6.412 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.175 4.175 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.423 4.423 8 H 0.135 0.865 9 N -0.143 5.143 10 C -0.007 4.007 11 C 0.309 3.691 12 O -0.374 6.374 13 O -0.345 6.345 14 C 0.310 3.690 15 O -0.438 6.438 16 C -0.129 4.129 17 C -0.097 4.097 18 C -0.248 4.248 19 C 0.384 3.616 20 N -0.422 5.422 21 O -0.427 6.427 22 C -0.099 4.099 23 N -0.138 5.138 24 H 0.266 0.734 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.170 0.830 28 H 0.255 0.745 29 H 0.172 0.828 30 H 0.225 0.775 31 H 0.230 0.770 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.403 -7.157 5.977 12.553 hybrid contribution -1.304 1.004 -0.490 1.717 sum -9.708 -6.154 5.488 12.737 Atomic orbital electron populations 1.69706 1.06222 1.28585 1.48339 1.25287 0.95484 1.00287 0.96430 0.85779 0.78929 0.79398 0.79474 1.19551 1.20838 1.19532 1.19846 0.98391 0.82937 1.41138 0.86510 1.43426 1.12721 1.06311 1.51818 1.21474 0.81470 1.06265 0.91467 1.24006 0.81944 0.71938 0.91192 1.90681 1.81889 1.43759 1.21090 1.84538 1.18341 1.86121 1.45535 1.16784 0.87256 0.81099 0.83894 1.90707 1.17430 1.85466 1.50199 1.20743 0.83271 0.97079 1.11775 1.20949 0.99466 0.89046 1.00215 1.19482 0.95075 0.92659 1.17563 1.17476 0.83260 0.85938 0.74894 1.43682 1.12907 1.11489 1.74121 1.90802 1.27831 1.72831 1.51252 1.22297 0.99203 0.83982 1.04434 1.43205 1.10662 1.08849 1.51093 0.73365 0.91326 0.90581 0.82958 0.74546 0.82755 0.77499 0.76991 0.80964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.50 9.03 55.50 0.50 -21.00 16 2 C 0.03 0.66 5.01 -17.45 -0.09 0.57 16 3 Si 0.94 19.53 29.60 -169.99 -5.03 14.50 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.30 -7.83 9.47 -15.01 -0.14 -7.97 16 8 H 0.12 3.24 7.26 -52.49 -0.38 2.86 16 9 N -0.42 -10.39 2.12 -117.58 -0.25 -10.64 16 10 C 0.12 2.45 4.74 -5.19 -0.02 2.43 16 11 C 0.47 9.41 4.25 36.01 0.15 9.56 16 12 O -0.49 -11.90 17.12 -18.75 -0.32 -12.22 16 13 O -0.53 -8.09 13.37 -39.26 -0.52 -8.61 16 14 C 0.52 12.93 7.53 -12.85 -0.10 12.83 16 15 O -0.56 -15.55 16.46 5.17 0.09 -15.47 16 16 C -0.02 -0.35 6.57 -82.41 -0.54 -0.89 16 17 C -0.07 -1.40 10.38 -39.06 -0.41 -1.81 16 18 C -0.24 -3.77 6.13 -105.02 -0.64 -4.41 16 19 C 0.60 8.96 8.09 -12.54 -0.10 8.86 16 20 N -0.86 -7.90 8.86 30.42 0.27 -7.63 16 21 O -0.55 -10.60 17.76 5.26 0.09 -10.50 16 22 C 0.04 0.54 11.43 -16.47 -0.19 0.36 16 23 N -0.53 -8.64 4.73 -9.29 -0.04 -8.68 16 24 H 0.42 6.46 3.43 -40.82 -0.14 6.32 16 25 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 26 H 0.08 1.29 5.26 -51.93 -0.27 1.01 16 27 H 0.15 3.21 5.96 -51.93 -0.31 2.90 16 28 H 0.40 4.42 9.10 45.56 0.41 4.84 16 29 H 0.15 3.15 8.06 -52.49 -0.42 2.73 16 30 H 0.40 2.33 7.74 -40.82 -0.32 2.02 16 31 H 0.40 3.05 8.93 -40.82 -0.36 2.69 16 32 H 0.17 1.26 7.44 -52.49 -0.39 0.87 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -35.70 285.46 -4.32 -40.01 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -1.32 Total: 16.43 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: -2.08 Total: 19.53 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.48 Total: -47.96 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.67 Total: -46.81 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -35.70 -4.32 -40.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069018.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.152 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds