Wall clock time and date at job start Fri Apr 10 2020 14:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31393 * 1 3 3 Si 1.86799 * 119.99983 * 2 1 4 4 H 1.48507 * 109.47213 * 239.99967 * 3 2 1 5 5 H 1.48498 * 109.47287 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47526 * 119.99923 * 3 2 1 7 7 C 1.39019 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00117 * 158.94184 * 7 2 1 9 9 N 1.36870 * 119.99765 * 338.95262 * 7 2 1 10 10 C 1.46503 * 120.00335 * 351.84851 * 9 7 2 11 11 C 1.50704 * 109.46905 * 92.28520 * 10 9 7 12 12 O 1.20821 * 120.00255 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99800 * 180.02562 * 11 10 9 14 14 C 1.34774 * 120.00152 * 171.85664 * 9 7 2 15 15 O 1.21726 * 119.99826 * 5.77523 * 14 9 7 16 16 C 1.46680 * 120.00285 * 185.78383 * 14 9 7 17 17 C 1.36466 * 125.85735 * 186.90759 * 16 14 9 18 18 C 1.41288 * 107.00896 * 179.90647 * 17 16 14 19 19 C 1.47389 * 126.46080 * 180.11236 * 18 17 16 20 20 N 1.34774 * 120.00242 * 180.26332 * 19 18 17 21 21 O 1.21617 * 119.99930 * 0.25883 * 19 18 17 22 22 C 1.38231 * 107.08465 * 0.35099 * 18 17 16 23 23 N 1.34312 * 108.41182 * 359.78657 * 22 18 17 24 24 H 0.96991 * 125.39598 * 180.02562 * 23 22 18 25 25 H 0.96999 * 119.99974 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47527 * 212.28599 * 10 9 7 27 27 H 1.09006 * 109.47045 * 332.29002 * 10 9 7 28 28 H 0.96698 * 116.99888 * 179.97438 * 13 11 10 29 29 H 1.07993 * 126.49876 * 0.02562 * 17 16 14 30 30 H 0.96996 * 120.00266 * 359.97438 * 20 19 18 31 31 H 0.97003 * 119.99835 * 180.02562 * 20 19 18 32 32 H 1.07998 * 125.79850 * 179.81937 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1017 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1016 1.6965 1.2124 7 6 2.0091 -1.2039 0.0005 8 1 3.0349 -1.2352 -0.3355 9 7 1.3932 -2.3495 0.4268 10 6 0.0682 -2.2813 1.0480 11 6 -0.9916 -2.4632 -0.0080 12 8 -0.6728 -2.6328 -1.1609 13 8 -2.2897 -2.4367 0.3325 14 6 2.0058 -3.5404 0.2751 15 8 3.1479 -3.5884 -0.1433 16 6 1.2963 -4.7786 0.6141 17 6 1.8386 -6.0307 0.6343 18 6 0.8090 -6.9209 1.0134 19 6 0.9281 -8.3814 1.1717 20 7 -0.1459 -9.1097 1.5356 21 8 1.9956 -8.9295 0.9737 22 6 -0.3325 -6.1647 1.2026 23 7 -0.0336 -4.8777 0.9611 24 1 -0.6552 -4.1356 1.0219 25 1 -0.4850 0.8400 0.0004 26 1 -0.0240 -3.0698 1.7948 27 1 -0.0590 -1.3104 1.5270 28 1 -2.9328 -2.5575 -0.3794 29 1 2.8614 -6.2915 0.4059 30 1 -0.9973 -8.6726 1.6938 31 1 -0.0674 -10.0709 1.6401 32 1 -1.3003 -6.5441 1.4954 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069018.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:42 Heat of formation + Delta-G solvation = -111.970945 kcal Electronic energy + Delta-G solvation = -22373.789615 eV Core-core repulsion = 18721.486359 eV Total energy + Delta-G solvation = -3652.303256 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.92437 -41.15295 -40.06238 -39.56302 -37.25946 -36.61135 -34.64813 -34.02355 -32.34644 -30.58177 -29.76986 -27.10774 -24.49929 -23.56839 -22.84540 -21.40265 -20.67348 -19.48830 -19.13685 -18.80816 -17.95714 -17.68801 -17.53594 -17.07173 -16.30420 -16.24400 -16.08037 -15.91978 -15.39925 -14.84912 -14.67458 -14.52664 -14.33208 -13.93354 -13.64683 -13.45305 -13.27248 -12.71719 -12.49568 -12.34391 -12.16565 -11.76298 -11.20429 -11.10220 -10.87673 -10.61113 -10.22834 -10.07782 -9.38941 -8.58093 -6.03537 0.46491 0.77840 1.28907 1.40743 1.43290 1.52028 1.93507 2.09192 2.23336 2.35880 2.58560 2.64327 2.83519 3.04112 3.69535 3.80159 3.92139 4.01457 4.29026 4.56616 4.70851 4.84573 4.90726 5.35568 5.39318 5.56079 5.75244 5.88547 6.01279 6.20421 6.26634 6.62572 6.91959 7.08951 7.21823 7.48801 7.69526 8.47659 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027459 B = 0.005470 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.442823 B = 5117.312616 C = 5918.116255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.005 3.995 3 Si 0.998 3.002 4 H -0.282 1.282 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.342 4.342 8 H 0.084 0.916 9 N -0.433 5.433 10 C 0.116 3.884 11 C 0.483 3.517 12 O -0.538 6.538 13 O -0.509 6.509 14 C 0.504 3.496 15 O -0.613 6.613 16 C -0.052 4.052 17 C -0.082 4.082 18 C -0.257 4.257 19 C 0.597 3.403 20 N -0.825 5.825 21 O -0.604 6.604 22 C 0.101 3.899 23 N -0.529 5.529 24 H 0.424 0.576 25 H 0.283 0.717 26 H 0.113 0.887 27 H 0.147 0.853 28 H 0.421 0.579 29 H 0.128 0.872 30 H 0.419 0.581 31 H 0.413 0.587 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 -7.854 7.978 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.196 4.196 3 Si 0.821 3.179 4 H -0.207 1.207 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.469 4.469 8 H 0.102 0.898 9 N -0.150 5.150 10 C -0.010 4.010 11 C 0.325 3.675 12 O -0.426 6.426 13 O -0.322 6.322 14 C 0.296 3.704 15 O -0.499 6.499 16 C -0.163 4.163 17 C -0.108 4.108 18 C -0.266 4.266 19 C 0.384 3.616 20 N -0.389 5.389 21 O -0.486 6.486 22 C -0.041 4.041 23 N -0.133 5.133 24 H 0.272 0.728 25 H 0.093 0.907 26 H 0.130 0.870 27 H 0.164 0.836 28 H 0.282 0.718 29 H 0.146 0.854 30 H 0.251 0.749 31 H 0.245 0.755 32 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -12.535 -7.664 7.592 16.538 hybrid contribution -0.256 1.081 -0.934 1.451 sum -12.791 -6.584 6.658 15.852 Atomic orbital electron populations 1.69757 1.06624 1.29564 1.46881 1.25964 0.96389 1.02209 0.95088 0.84926 0.77970 0.76053 0.78983 1.20741 1.18983 1.18916 1.19711 0.98001 0.84933 1.44220 0.89783 1.43484 1.14264 1.05699 1.51529 1.21583 0.80041 1.07317 0.92050 1.23694 0.83182 0.70708 0.89944 1.90683 1.82944 1.46113 1.22843 1.84454 1.16605 1.85034 1.46112 1.17426 0.87060 0.82533 0.83398 1.90634 1.19847 1.86582 1.52875 1.20010 0.85438 0.95181 1.15691 1.20956 0.99550 0.90136 1.00195 1.19565 0.94985 0.93333 1.18761 1.17391 0.83699 0.85645 0.74837 1.43327 1.12168 1.11930 1.71447 1.90788 1.30265 1.73528 1.54005 1.23358 1.00554 0.81637 0.98523 1.43064 1.08883 1.10373 1.51014 0.72766 0.90675 0.86993 0.83614 0.71807 0.85444 0.74935 0.75521 0.73673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -42.40 9.03 21.68 0.20 -42.20 16 2 C 0.01 0.26 5.01 84.95 0.43 0.69 16 3 Si 1.00 40.29 29.60 68.60 2.03 42.32 16 4 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.34 -18.97 9.47 84.09 0.80 -18.17 16 8 H 0.08 5.08 7.26 -2.91 -0.02 5.06 16 9 N -0.43 -22.01 2.12 -644.11 -1.37 -23.37 16 10 C 0.12 4.64 4.74 85.63 0.41 5.05 16 11 C 0.48 18.49 4.25 71.24 0.30 18.79 16 12 O -0.54 -25.88 17.12 21.98 0.38 -25.51 16 13 O -0.51 -13.43 13.37 -51.42 -0.69 -14.12 16 14 C 0.50 26.57 7.53 86.45 0.65 27.23 16 15 O -0.61 -37.38 16.46 -4.43 -0.07 -37.45 16 16 C -0.05 -2.19 6.57 40.00 0.26 -1.93 16 17 C -0.08 -3.31 10.38 22.61 0.23 -3.08 16 18 C -0.26 -7.62 6.13 -20.12 -0.12 -7.74 16 19 C 0.60 16.61 8.09 86.65 0.70 17.31 16 20 N -0.82 -11.53 8.86 -175.91 -1.56 -13.09 16 21 O -0.60 -23.28 17.76 -4.09 -0.07 -23.36 16 22 C 0.10 2.11 11.43 84.31 0.96 3.07 16 23 N -0.53 -15.69 4.73 -183.32 -0.87 -16.56 16 24 H 0.42 11.65 3.43 -92.71 -0.32 11.33 16 25 H 0.28 12.60 8.31 -92.71 -0.77 11.83 16 26 H 0.11 3.57 5.26 -2.39 -0.01 3.55 16 27 H 0.15 6.02 5.96 -2.38 -0.01 6.00 16 28 H 0.42 7.52 9.10 -74.06 -0.67 6.84 16 29 H 0.13 5.72 8.06 -2.91 -0.02 5.69 16 30 H 0.42 2.24 7.74 -92.71 -0.72 1.52 16 31 H 0.41 4.63 8.93 -92.71 -0.83 3.80 16 32 H 0.25 1.39 7.44 -2.91 -0.02 1.37 16 Total: -1.00 -86.48 285.46 1.32 -85.16 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -1.28 Total: 26.95 kcal Atomic # 6 Polarization: 36.60 SS G_CDS: 4.62 Total: 41.22 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -3.60 Total: -95.22 kcal Atomic # 8 Polarization: -99.98 SS G_CDS: -0.46 Total: -100.44 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -86.48 1.32 -85.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069018.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.806 kcal (2) G-P(sol) polarization free energy of solvation -86.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds